Wall clock time and date at job start Tue Mar 31 2020 22:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39312 * 119.05498 * 2 1 4 4 C 1.38864 * 119.57401 * 179.72334 * 3 2 1 5 5 C 1.47903 * 121.10716 * 180.29314 * 4 3 2 6 6 O 1.21543 * 119.99589 * 174.14523 * 5 4 3 7 7 N 1.34777 * 120.00221 * 354.14807 * 5 4 3 8 8 C 1.46503 * 119.99558 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.46756 * 180.02562 * 8 7 5 10 10 H 1.08998 * 109.47355 * 65.00091 * 9 8 7 11 11 N 1.46505 * 109.47438 * 305.00057 * 9 8 7 12 12 C 1.36932 * 120.00198 * 154.99912 * 11 9 8 13 13 H 1.08004 * 120.00294 * 0.02562 * 12 11 9 14 14 C 1.38813 * 119.99909 * 180.02562 * 12 11 9 15 15 N 1.31625 * 120.00091 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00153 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46881 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47446 * 119.99860 * 16 14 12 19 19 H 1.48508 * 109.46893 * 239.99861 * 16 14 12 20 20 C 1.53004 * 109.47413 * 184.99850 * 9 8 7 21 21 C 1.52994 * 117.50245 * 248.74687 * 20 9 8 22 22 C 1.52993 * 117.50084 * 180.08279 * 20 9 8 23 23 C 1.41817 * 117.77819 * 0.27656 * 4 3 2 24 24 C 1.40092 * 121.36894 * 179.97438 * 23 4 3 25 25 C 1.36257 * 119.64438 * 179.97438 * 24 23 4 26 26 C 1.39338 * 120.83198 * 0.08141 * 25 24 23 27 27 C 1.36070 * 121.05363 * 359.93426 * 26 25 24 28 28 C 1.40699 * 119.73999 * 0.02562 * 27 26 25 29 29 N 1.30965 * 119.05721 * 180.31782 * 2 1 3 30 30 H 1.09000 * 109.47618 * 90.00529 * 1 2 3 31 31 H 1.09004 * 109.47070 * 210.00321 * 1 2 3 32 32 H 1.08998 * 109.47278 * 330.00164 * 1 2 3 33 33 H 1.07998 * 120.21633 * 359.97438 * 3 2 1 34 34 H 0.96991 * 119.99980 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47223 * 299.99999 * 8 7 5 36 36 H 1.08996 * 109.47218 * 59.99976 * 8 7 5 37 37 H 0.97007 * 119.99517 * 335.00269 * 11 9 8 38 38 H 0.96997 * 120.00093 * 180.02562 * 15 14 12 39 39 H 1.09006 * 115.54458 * 34.41649 * 20 9 8 40 40 H 1.09002 * 117.49432 * 0.02562 * 21 20 9 41 41 H 1.09005 * 117.49785 * 145.01135 * 21 20 9 42 42 H 1.09002 * 117.49756 * 214.97721 * 22 20 9 43 43 H 1.09001 * 117.50170 * 359.97438 * 22 20 9 44 44 H 1.07997 * 120.17851 * 0.02562 * 24 23 4 45 45 H 1.08001 * 119.58490 * 180.02562 * 25 24 23 46 46 H 1.08009 * 119.47437 * 179.97438 * 26 25 24 47 47 H 1.07996 * 120.12608 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1836 1.2178 0.0000 4 6 3.5722 1.2304 0.0058 5 6 4.3248 2.5036 0.0125 6 8 5.5349 2.4935 0.1249 7 7 3.6687 3.6749 -0.1060 8 6 4.4142 4.9360 -0.0988 9 6 3.4391 6.1057 -0.2462 10 1 2.7896 6.1497 0.6281 11 7 2.6257 5.9148 -1.4496 12 6 1.3894 6.4967 -1.5399 13 1 1.0141 7.0968 -0.7241 14 6 0.6186 6.3154 -2.6800 15 7 1.0761 5.5845 -3.6744 16 14 -1.0676 7.1098 -2.8035 17 1 -1.3465 7.8748 -1.5616 18 1 -1.0974 8.0294 -3.9691 19 1 -2.0996 6.0562 -2.9777 20 6 4.2249 7.4132 -0.3639 21 6 4.1344 8.3994 0.8023 22 6 3.4238 8.7075 -0.5181 23 6 4.2445 -0.0183 0.0055 24 6 5.6434 -0.0934 0.0107 25 6 6.2529 -1.3120 0.0107 26 6 5.5023 -2.4859 0.0041 27 6 4.1421 -2.4493 -0.0013 28 6 3.4772 -1.2093 -0.0008 29 7 2.1431 -1.1448 -0.0064 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6317 2.1461 -0.0004 34 1 2.7030 3.6829 -0.1960 35 1 4.9567 5.0320 0.8417 36 1 5.1210 4.9450 -0.9285 37 1 2.9629 5.3761 -2.1825 38 1 0.5376 5.4581 -4.4712 39 1 5.1761 7.3441 -0.8919 40 1 3.5153 8.1165 1.6536 41 1 5.0259 8.9793 1.0414 42 1 3.8482 9.4901 -1.1471 43 1 2.3369 8.6276 -0.5360 44 1 6.2355 0.8098 0.0154 45 1 7.3314 -1.3687 0.0151 46 1 6.0082 -3.4402 0.0038 47 1 3.5751 -3.3685 -0.0061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731409506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:09 Heat of formation + Delta-G solvation = 41.066834 kcal Electronic energy + Delta-G solvation = -28812.176298 eV Core-core repulsion = 24960.189318 eV Total energy + Delta-G solvation = -3851.986980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.21456 -40.52038 -39.01109 -38.37611 -36.19060 -35.24114 -34.55381 -32.98551 -32.76559 -31.15623 -29.65373 -28.69923 -26.17644 -25.33468 -24.39090 -23.50680 -23.15555 -22.98442 -21.75554 -20.94568 -19.33842 -19.00154 -18.44799 -18.42587 -16.96290 -16.89074 -16.47046 -16.38588 -16.04126 -15.82299 -15.73237 -15.60762 -15.22261 -14.96899 -14.84616 -14.48075 -14.10455 -14.06425 -13.95013 -13.70054 -13.11527 -12.98371 -12.92220 -12.71010 -12.56463 -12.41000 -12.34133 -12.31681 -12.25337 -11.94394 -11.72566 -11.57967 -11.44887 -11.00256 -10.93147 -10.77671 -10.37111 -10.17672 -9.72508 -9.26553 -8.99470 -7.87530 -5.15421 -0.98701 -0.26631 0.65837 1.49641 1.52876 1.59822 1.66034 1.95807 2.08264 2.58797 3.04635 3.08612 3.12806 3.35524 3.50055 3.57018 3.66257 3.77459 3.83295 3.99184 4.14579 4.16294 4.18504 4.34554 4.39066 4.39234 4.40248 4.46329 4.54914 4.65954 4.70600 4.77780 4.83071 4.84593 4.91704 5.00226 5.05279 5.14262 5.17302 5.21044 5.36267 5.38639 5.41639 5.48957 5.50561 5.57832 5.63958 5.89112 6.31592 6.38922 6.78042 7.01926 7.40456 8.10416 8.35964 9.35159 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011212 B = 0.003345 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.758759 B = 8369.519716 C =10212.588888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.146 3.854 3 C -0.127 4.127 4 C -0.087 4.087 5 C 0.557 3.443 6 O -0.559 6.559 7 N -0.697 5.697 8 C 0.126 3.874 9 C 0.197 3.803 10 H 0.061 0.939 11 N -0.724 5.724 12 C -0.217 4.217 13 H 0.079 0.921 14 C -0.067 4.067 15 N -0.966 5.966 16 Si 0.956 3.044 17 H -0.266 1.266 18 H -0.305 1.305 19 H -0.296 1.296 20 C -0.173 4.173 21 C -0.162 4.162 22 C -0.174 4.174 23 C -0.091 4.091 24 C -0.125 4.125 25 C -0.113 4.113 26 C -0.088 4.088 27 C -0.109 4.109 28 C 0.106 3.894 29 N -0.474 5.474 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.157 0.843 34 H 0.411 0.589 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.372 0.628 38 H 0.246 0.754 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.152 0.848 45 H 0.155 0.845 46 H 0.169 0.831 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.811 -11.268 11.138 16.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.006 4.006 3 C -0.148 4.148 4 C -0.098 4.098 5 C 0.345 3.655 6 O -0.440 6.440 7 N -0.347 5.347 8 C 0.002 3.998 9 C 0.088 3.912 10 H 0.079 0.921 11 N -0.363 5.363 12 C -0.348 4.348 13 H 0.096 0.904 14 C -0.259 4.259 15 N -0.617 5.617 16 Si 0.788 3.212 17 H -0.190 1.190 18 H -0.233 1.233 19 H -0.224 1.224 20 C -0.194 4.194 21 C -0.199 4.199 22 C -0.211 4.211 23 C -0.094 4.094 24 C -0.143 4.143 25 C -0.131 4.131 26 C -0.108 4.108 27 C -0.127 4.127 28 C -0.016 4.016 29 N -0.184 5.184 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.174 0.826 34 H 0.249 0.751 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.204 0.796 38 H 0.056 0.944 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.124 0.876 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.169 0.831 45 H 0.173 0.827 46 H 0.186 0.814 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.099 -11.967 11.277 17.538 hybrid contribution -0.842 1.392 -1.114 1.971 sum 5.258 -10.575 10.163 15.581 Atomic orbital electron populations 1.20897 0.85779 1.05089 1.04378 1.21906 0.98838 0.87132 0.92722 1.22553 0.93214 1.00962 0.98097 1.20414 0.94370 0.93197 1.01770 1.18186 0.86832 0.83836 0.76666 1.90541 1.14406 1.87062 1.51960 1.45874 1.12067 1.05239 1.71525 1.21609 0.94223 0.81792 1.02178 1.20161 0.90489 0.90279 0.90257 0.92134 1.42589 1.16554 1.60108 1.17091 1.19475 0.92485 1.22799 1.00068 0.90368 1.25320 1.01627 1.02036 0.96930 1.69810 1.38775 1.45560 1.07523 0.85319 0.81192 0.77496 0.77228 1.19046 1.23293 1.22396 1.22911 1.00587 0.92498 1.03426 1.23035 1.02837 1.02498 0.91572 1.22735 0.99281 0.98621 1.00482 1.18874 0.95865 0.92325 1.02304 1.22021 0.93132 1.01199 0.97976 1.21447 1.01990 0.91581 0.98080 1.21382 0.93134 1.00030 0.96212 1.21072 0.95162 0.95641 1.00817 1.19250 0.89072 0.93782 0.99480 1.67693 1.08934 1.29302 1.12493 0.89352 0.89255 0.88534 0.82576 0.75080 0.89503 0.92497 0.79576 0.94449 0.88806 0.88518 0.87607 0.89691 0.90016 0.83085 0.82715 0.81352 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 10.14 71.24 0.72 -1.33 16 2 C 0.15 3.95 6.78 42.95 0.29 4.24 16 3 C -0.13 -3.62 9.21 22.68 0.21 -3.42 16 4 C -0.09 -2.78 5.94 -19.68 -0.12 -2.90 16 5 C 0.56 18.92 7.75 86.80 0.67 19.60 16 6 O -0.56 -20.77 13.53 -3.85 -0.05 -20.83 16 7 N -0.70 -22.38 5.34 -465.92 -2.49 -24.87 16 8 C 0.13 3.97 5.22 86.38 0.45 4.42 16 9 C 0.20 6.71 2.70 44.99 0.12 6.83 16 10 H 0.06 2.03 7.84 -2.39 -0.02 2.01 16 11 N -0.72 -31.53 4.54 -322.93 -1.47 -33.00 16 12 C -0.22 -10.48 8.63 84.03 0.73 -9.75 16 13 H 0.08 3.65 6.91 -2.91 -0.02 3.63 16 14 C -0.07 -3.50 5.50 84.86 0.47 -3.03 16 15 N -0.97 -55.26 13.06 21.65 0.28 -54.97 16 16 Si 0.96 43.19 29.55 68.60 2.03 45.22 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 18 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 19 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 20 C -0.17 -5.45 5.36 -10.80 -0.06 -5.51 16 21 C -0.16 -4.19 10.18 30.62 0.31 -3.87 16 22 C -0.17 -5.66 9.78 30.62 0.30 -5.36 16 23 C -0.09 -2.87 5.76 -21.10 -0.12 -2.99 16 24 C -0.13 -3.62 9.25 22.26 0.21 -3.41 16 25 C -0.11 -2.40 9.96 22.07 0.22 -2.18 16 26 C -0.09 -1.59 9.94 22.03 0.22 -1.37 16 27 C -0.11 -2.44 9.98 22.37 0.22 -2.21 16 28 C 0.11 3.09 6.61 40.33 0.27 3.36 16 29 N -0.47 -13.83 10.19 -176.84 -1.80 -15.64 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.10 1.58 8.07 -2.39 -0.02 1.56 16 33 H 0.16 3.97 6.55 -2.91 -0.02 3.95 16 34 H 0.41 13.19 6.31 -92.72 -0.58 12.60 16 35 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.37 18.27 7.80 -92.70 -0.72 17.55 16 38 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 39 H 0.09 2.92 8.11 -2.38 -0.02 2.90 16 40 H 0.10 2.34 8.05 -2.39 -0.02 2.32 16 41 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 42 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.08 3.05 6.23 -2.39 -0.01 3.03 16 44 H 0.15 4.85 4.98 -2.91 -0.01 4.84 16 45 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 46 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 47 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -64.41 388.39 1.32 -63.10 By element: Atomic # 1 Polarization: 50.17 SS G_CDS: -0.29 Total: 49.88 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 5.11 Total: -8.89 kcal Atomic # 7 Polarization: -123.00 SS G_CDS: -5.48 Total: -128.48 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.83 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -64.41 1.32 -63.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731409506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.162 kcal (2) G-P(sol) polarization free energy of solvation -64.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds