Wall clock time and date at job start Tue Mar 31 2020 22:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39312 * 119.05498 * 2 1 4 4 C 1.38864 * 119.57401 * 179.72334 * 3 2 1 5 5 C 1.47903 * 121.10716 * 180.29314 * 4 3 2 6 6 O 1.21543 * 119.99589 * 174.14523 * 5 4 3 7 7 N 1.34777 * 120.00221 * 354.14807 * 5 4 3 8 8 C 1.46503 * 119.99558 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.46756 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.47334 * 294.99834 * 9 8 7 11 11 N 1.46503 * 109.47345 * 54.99917 * 9 8 7 12 12 C 1.36934 * 119.99925 * 204.99921 * 11 9 8 13 13 H 1.07997 * 120.00738 * 359.97438 * 12 11 9 14 14 C 1.38820 * 119.99608 * 180.02562 * 12 11 9 15 15 N 1.31614 * 120.00108 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99870 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47164 * 89.99694 * 16 14 12 18 18 H 1.48498 * 109.47038 * 209.99602 * 16 14 12 19 19 H 1.48503 * 109.47079 * 329.99816 * 16 14 12 20 20 C 1.53003 * 109.47306 * 174.99796 * 9 8 7 21 21 C 1.52996 * 117.50175 * 248.74787 * 20 9 8 22 22 C 1.53002 * 117.50065 * 180.08355 * 20 9 8 23 23 C 1.41817 * 117.77819 * 0.27656 * 4 3 2 24 24 C 1.40092 * 121.36894 * 179.97438 * 23 4 3 25 25 C 1.36257 * 119.64438 * 179.97438 * 24 23 4 26 26 C 1.39338 * 120.83198 * 0.08141 * 25 24 23 27 27 C 1.36070 * 121.05363 * 359.93426 * 26 25 24 28 28 C 1.40699 * 119.73999 * 0.02562 * 27 26 25 29 29 N 1.30965 * 119.05721 * 180.31782 * 2 1 3 30 30 H 1.09000 * 109.47618 * 90.00529 * 1 2 3 31 31 H 1.09004 * 109.47070 * 210.00321 * 1 2 3 32 32 H 1.08998 * 109.47278 * 330.00164 * 1 2 3 33 33 H 1.07998 * 120.21633 * 359.97438 * 3 2 1 34 34 H 0.96991 * 119.99980 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47223 * 299.99999 * 8 7 5 36 36 H 1.08996 * 109.47218 * 59.99976 * 8 7 5 37 37 H 0.97000 * 119.99911 * 25.00262 * 11 9 8 38 38 H 0.96996 * 119.99994 * 180.02562 * 15 14 12 39 39 H 1.09001 * 115.54359 * 34.42170 * 20 9 8 40 40 H 1.08998 * 117.49541 * 359.97438 * 21 20 9 41 41 H 1.08998 * 117.49893 * 145.02136 * 21 20 9 42 42 H 1.08997 * 117.49542 * 214.97917 * 22 20 9 43 43 H 1.08998 * 117.49771 * 0.02562 * 22 20 9 44 44 H 1.07997 * 120.17851 * 0.02562 * 24 23 4 45 45 H 1.08001 * 119.58490 * 180.02562 * 25 24 23 46 46 H 1.08009 * 119.47437 * 179.97438 * 26 25 24 47 47 H 1.07996 * 120.12608 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1836 1.2178 0.0000 4 6 3.5722 1.2304 0.0058 5 6 4.3248 2.5036 0.0125 6 8 5.5349 2.4935 0.1249 7 7 3.6687 3.6749 -0.1060 8 6 4.4142 4.9360 -0.0988 9 6 3.4391 6.1057 -0.2462 10 1 2.9608 6.0590 -1.2246 11 7 2.4177 6.0249 0.8009 12 6 1.1910 6.6018 0.6068 13 1 0.9766 7.1167 -0.3180 14 6 0.2234 6.5257 1.5993 15 7 0.4848 5.8987 2.7266 16 14 -1.4502 7.3121 1.3343 17 1 -2.3676 6.3251 0.7102 18 1 -2.0054 7.7466 2.6412 19 1 -1.3079 8.4896 0.4407 20 6 4.2018 7.4254 -0.1138 21 6 3.9346 8.2741 1.1308 22 6 3.3970 8.7214 -0.2309 23 6 4.2445 -0.0183 0.0055 24 6 5.6434 -0.0934 0.0107 25 6 6.2529 -1.3120 0.0107 26 6 5.5023 -2.4859 0.0041 27 6 4.1421 -2.4493 -0.0013 28 6 3.4772 -1.2093 -0.0008 29 7 2.1431 -1.1448 -0.0064 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6317 2.1461 -0.0004 34 1 2.7030 3.6829 -0.1960 35 1 4.9567 5.0320 0.8417 36 1 5.1210 4.9450 -0.9285 37 1 2.6103 5.5629 1.6318 38 1 -0.1914 5.8452 3.4199 39 1 5.2156 7.4246 -0.5144 40 1 3.2150 7.8925 1.8551 41 1 4.7724 8.8320 1.5489 42 1 3.8815 9.5733 -0.7080 43 1 2.3241 8.6338 -0.4018 44 1 6.2355 0.8098 0.0154 45 1 7.3314 -1.3687 0.0151 46 1 6.0082 -3.4402 0.0038 47 1 3.5751 -3.3685 -0.0061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731409507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:14 Heat of formation + Delta-G solvation = 60.536151 kcal Electronic energy + Delta-G solvation = -28939.072656 eV Core-core repulsion = 25087.929929 eV Total energy + Delta-G solvation = -3851.142727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13448 -39.26460 -37.68453 -37.40081 -34.69222 -33.52033 -33.30025 -32.03288 -31.09124 -30.00899 -28.26291 -27.72846 -24.85671 -23.83395 -23.20440 -22.52580 -22.06753 -21.50369 -20.39253 -19.14392 -18.04347 -17.65143 -17.34968 -17.06023 -15.69836 -15.50496 -15.32070 -15.01156 -14.75114 -14.70147 -14.57359 -14.31819 -13.74609 -13.62185 -13.44256 -13.15221 -13.04644 -12.94575 -12.90021 -12.27210 -12.16809 -11.65848 -11.44021 -11.38767 -11.35988 -11.22855 -10.95802 -10.91198 -10.58610 -10.47067 -10.23759 -10.17799 -9.75327 -9.55720 -9.28720 -9.17776 -9.05824 -8.85427 -8.72692 -8.25109 -7.15792 -5.91231 -3.22158 0.08788 0.75054 1.70802 2.74143 3.19509 3.24433 3.33247 3.40321 3.41705 4.06842 4.09942 4.42744 4.47707 4.57106 4.65267 4.70535 4.80009 5.04328 5.13228 5.25539 5.29129 5.37315 5.40431 5.48006 5.48394 5.56408 5.65759 5.70023 5.76832 5.78271 5.89088 5.90407 5.96534 5.98717 6.04328 6.08479 6.27969 6.33728 6.34698 6.44481 6.52839 6.59042 6.65270 6.76216 6.85738 6.94478 7.22188 7.58651 7.69569 7.84212 8.25228 8.31941 9.38039 9.90592 10.26963 11.29852 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.003340 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.618739 B = 8380.513541 C =10301.446938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.158 3.842 3 C -0.128 4.128 4 C -0.066 4.066 5 C 0.558 3.442 6 O -0.539 6.539 7 N -0.698 5.698 8 C 0.118 3.882 9 C 0.191 3.809 10 H 0.058 0.942 11 N -0.718 5.718 12 C -0.243 4.243 13 H 0.072 0.928 14 C -0.005 4.005 15 N -0.927 5.927 16 Si 0.902 3.098 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.282 1.282 20 C -0.178 4.178 21 C -0.163 4.163 22 C -0.175 4.175 23 C -0.072 4.072 24 C -0.095 4.095 25 C -0.127 4.127 26 C -0.099 4.099 27 C -0.102 4.102 28 C 0.128 3.872 29 N -0.465 5.465 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.150 0.850 34 H 0.411 0.589 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.169 0.831 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.652 -11.380 -6.841 14.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.006 3.994 3 C -0.149 4.149 4 C -0.077 4.077 5 C 0.344 3.656 6 O -0.419 6.419 7 N -0.349 5.349 8 C -0.006 4.006 9 C 0.081 3.919 10 H 0.076 0.924 11 N -0.360 5.360 12 C -0.374 4.374 13 H 0.090 0.910 14 C -0.202 4.202 15 N -0.574 5.574 16 Si 0.733 3.267 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.208 1.208 20 C -0.200 4.200 21 C -0.200 4.200 22 C -0.212 4.212 23 C -0.075 4.075 24 C -0.113 4.113 25 C -0.145 4.145 26 C -0.119 4.119 27 C -0.121 4.121 28 C 0.006 3.994 29 N -0.176 5.176 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.167 0.833 34 H 0.249 0.751 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.221 0.779 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.137 0.863 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.121 0.879 44 H 0.186 0.814 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.943 -12.097 -6.816 15.524 hybrid contribution -0.887 1.216 0.248 1.525 sum 6.056 -10.880 -6.569 14.079 Atomic orbital electron populations 1.20835 0.87968 1.04268 1.03523 1.21438 0.97397 0.87556 0.93047 1.22437 0.93660 1.00312 0.98510 1.20397 0.93695 0.93468 1.00099 1.17995 0.86984 0.83431 0.77200 1.90552 1.13673 1.86747 1.50923 1.45915 1.12084 1.05255 1.71687 1.21683 0.94591 0.82306 1.02067 1.20001 0.88623 0.89313 0.93996 0.92399 1.42491 1.10690 1.66089 1.16734 1.19157 0.89265 1.28387 1.00572 0.91019 1.24706 0.98297 1.00893 0.96333 1.69650 1.34286 1.46922 1.06541 0.86283 0.84574 0.78983 0.76873 1.21699 1.21847 1.20767 1.23051 0.98898 0.93955 1.04073 1.22917 1.02630 1.02363 0.92062 1.22854 1.00859 0.96202 1.01263 1.18662 0.95121 0.92072 1.01607 1.22079 0.93486 1.00426 0.95344 1.21054 1.00368 0.92308 1.00791 1.20946 0.93734 0.98754 0.98488 1.20725 0.94180 0.95983 1.01188 1.18838 0.88848 0.92933 0.98737 1.67635 1.08756 1.28903 1.12263 0.89951 0.90218 0.89676 0.83286 0.75096 0.91225 0.91395 0.77917 0.93374 0.89589 0.86328 0.91264 0.90997 0.87906 0.81414 0.85584 0.85498 0.84836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.14 36.01 0.37 -0.78 16 2 C 0.16 2.15 6.78 -82.56 -0.56 1.59 16 3 C -0.13 -1.81 9.21 -38.95 -0.36 -2.16 16 4 C -0.07 -1.02 5.94 -104.34 -0.62 -1.64 16 5 C 0.56 9.16 7.75 -12.30 -0.10 9.07 16 6 O -0.54 -9.73 13.53 5.33 0.07 -9.66 16 7 N -0.70 -10.98 5.34 -61.23 -0.33 -11.31 16 8 C 0.12 1.86 5.22 -4.04 -0.02 1.84 16 9 C 0.19 3.30 2.86 -67.93 -0.19 3.11 16 10 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 11 N -0.72 -15.08 3.08 -53.42 -0.16 -15.24 16 12 C -0.24 -5.76 8.15 -15.06 -0.12 -5.88 16 13 H 0.07 1.69 6.91 -52.49 -0.36 1.32 16 14 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 15 N -0.93 -25.19 13.06 55.49 0.72 -24.47 16 16 Si 0.90 20.56 29.55 -169.99 -5.02 15.53 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.18 -2.94 5.70 -90.62 -0.52 -3.46 16 21 C -0.16 -2.92 9.74 -26.69 -0.26 -3.18 16 22 C -0.17 -2.99 9.87 -26.69 -0.26 -3.26 16 23 C -0.07 -1.11 5.76 -106.52 -0.61 -1.72 16 24 C -0.10 -1.36 9.25 -39.60 -0.37 -1.72 16 25 C -0.13 -1.45 9.96 -39.89 -0.40 -1.85 16 26 C -0.10 -1.03 9.94 -39.95 -0.40 -1.43 16 27 C -0.10 -1.23 9.98 -39.43 -0.39 -1.62 16 28 C 0.13 1.89 6.61 -84.87 -0.56 1.33 16 29 N -0.47 -6.85 10.19 -7.25 -0.07 -6.92 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.15 1.94 6.55 -52.49 -0.34 1.60 16 34 H 0.41 6.43 6.31 -40.82 -0.26 6.17 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.39 9.00 7.80 -40.82 -0.32 8.68 16 38 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.09 1.27 8.11 -51.93 -0.42 0.84 16 40 H 0.12 2.57 6.68 -51.93 -0.35 2.22 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.10 1.98 6.22 -51.93 -0.32 1.65 16 44 H 0.17 2.57 4.98 -52.49 -0.26 2.31 16 45 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 47 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -28.12 385.48 -10.87 -38.98 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -6.41 Total: 19.28 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -5.47 Total: -12.01 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.16 Total: -57.95 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.07 Total: -9.66 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.12 -10.87 -38.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731409507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.520 kcal (2) G-P(sol) polarization free energy of solvation -28.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds