Wall clock time and date at job start Tue Mar 31 2020 22:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39312 * 119.05498 * 2 1 4 4 C 1.38864 * 119.57401 * 179.72334 * 3 2 1 5 5 C 1.47903 * 121.10716 * 180.29314 * 4 3 2 6 6 O 1.21543 * 119.99589 * 174.14523 * 5 4 3 7 7 N 1.34777 * 120.00221 * 354.14807 * 5 4 3 8 8 C 1.46503 * 119.99558 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.46756 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.47334 * 294.99834 * 9 8 7 11 11 N 1.46503 * 109.47345 * 54.99917 * 9 8 7 12 12 C 1.36934 * 119.99925 * 204.99921 * 11 9 8 13 13 H 1.07997 * 120.00738 * 359.97438 * 12 11 9 14 14 C 1.38820 * 119.99608 * 180.02562 * 12 11 9 15 15 N 1.31614 * 120.00108 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99870 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47164 * 89.99694 * 16 14 12 18 18 H 1.48498 * 109.47038 * 209.99602 * 16 14 12 19 19 H 1.48503 * 109.47079 * 329.99816 * 16 14 12 20 20 C 1.53003 * 109.47306 * 174.99796 * 9 8 7 21 21 C 1.52996 * 117.50175 * 248.74787 * 20 9 8 22 22 C 1.53002 * 117.50065 * 180.08355 * 20 9 8 23 23 C 1.41817 * 117.77819 * 0.27656 * 4 3 2 24 24 C 1.40092 * 121.36894 * 179.97438 * 23 4 3 25 25 C 1.36257 * 119.64438 * 179.97438 * 24 23 4 26 26 C 1.39338 * 120.83198 * 0.08141 * 25 24 23 27 27 C 1.36070 * 121.05363 * 359.93426 * 26 25 24 28 28 C 1.40699 * 119.73999 * 0.02562 * 27 26 25 29 29 N 1.30965 * 119.05721 * 180.31782 * 2 1 3 30 30 H 1.09000 * 109.47618 * 90.00529 * 1 2 3 31 31 H 1.09004 * 109.47070 * 210.00321 * 1 2 3 32 32 H 1.08998 * 109.47278 * 330.00164 * 1 2 3 33 33 H 1.07998 * 120.21633 * 359.97438 * 3 2 1 34 34 H 0.96991 * 119.99980 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47223 * 299.99999 * 8 7 5 36 36 H 1.08996 * 109.47218 * 59.99976 * 8 7 5 37 37 H 0.97000 * 119.99911 * 25.00262 * 11 9 8 38 38 H 0.96996 * 119.99994 * 180.02562 * 15 14 12 39 39 H 1.09001 * 115.54359 * 34.42170 * 20 9 8 40 40 H 1.08998 * 117.49541 * 359.97438 * 21 20 9 41 41 H 1.08998 * 117.49893 * 145.02136 * 21 20 9 42 42 H 1.08997 * 117.49542 * 214.97917 * 22 20 9 43 43 H 1.08998 * 117.49771 * 0.02562 * 22 20 9 44 44 H 1.07997 * 120.17851 * 0.02562 * 24 23 4 45 45 H 1.08001 * 119.58490 * 180.02562 * 25 24 23 46 46 H 1.08009 * 119.47437 * 179.97438 * 26 25 24 47 47 H 1.07996 * 120.12608 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1836 1.2178 0.0000 4 6 3.5722 1.2304 0.0058 5 6 4.3248 2.5036 0.0125 6 8 5.5349 2.4935 0.1249 7 7 3.6687 3.6749 -0.1060 8 6 4.4142 4.9360 -0.0988 9 6 3.4391 6.1057 -0.2462 10 1 2.9608 6.0590 -1.2246 11 7 2.4177 6.0249 0.8009 12 6 1.1910 6.6018 0.6068 13 1 0.9766 7.1167 -0.3180 14 6 0.2234 6.5257 1.5993 15 7 0.4848 5.8987 2.7266 16 14 -1.4502 7.3121 1.3343 17 1 -2.3676 6.3251 0.7102 18 1 -2.0054 7.7466 2.6412 19 1 -1.3079 8.4896 0.4407 20 6 4.2018 7.4254 -0.1138 21 6 3.9346 8.2741 1.1308 22 6 3.3970 8.7214 -0.2309 23 6 4.2445 -0.0183 0.0055 24 6 5.6434 -0.0934 0.0107 25 6 6.2529 -1.3120 0.0107 26 6 5.5023 -2.4859 0.0041 27 6 4.1421 -2.4493 -0.0013 28 6 3.4772 -1.2093 -0.0008 29 7 2.1431 -1.1448 -0.0064 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6317 2.1461 -0.0004 34 1 2.7030 3.6829 -0.1960 35 1 4.9567 5.0320 0.8417 36 1 5.1210 4.9450 -0.9285 37 1 2.6103 5.5629 1.6318 38 1 -0.1914 5.8452 3.4199 39 1 5.2156 7.4246 -0.5144 40 1 3.2150 7.8925 1.8551 41 1 4.7724 8.8320 1.5489 42 1 3.8815 9.5733 -0.7080 43 1 2.3241 8.6338 -0.4018 44 1 6.2355 0.8098 0.0154 45 1 7.3314 -1.3687 0.0151 46 1 6.0082 -3.4402 0.0038 47 1 3.5751 -3.3685 -0.0061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731409507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:13 Heat of formation + Delta-G solvation = 45.565380 kcal Electronic energy + Delta-G solvation = -28939.721838 eV Core-core repulsion = 25087.929929 eV Total energy + Delta-G solvation = -3851.791908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.21352 -40.52592 -39.13372 -38.37621 -36.03726 -35.10594 -34.55750 -32.98522 -32.66415 -31.15191 -29.73297 -28.70633 -26.15654 -25.37356 -24.51289 -23.53410 -23.29868 -22.87417 -21.66438 -20.55386 -19.28894 -19.00013 -18.46365 -18.42436 -16.99650 -16.85154 -16.47713 -16.35003 -16.21793 -15.84502 -15.67948 -15.61383 -15.21549 -15.04773 -14.56259 -14.51245 -14.12537 -14.03330 -13.95187 -13.70164 -13.13310 -12.95526 -12.84829 -12.67565 -12.59749 -12.55638 -12.34757 -12.31215 -12.11722 -11.94648 -11.58828 -11.57972 -11.43227 -11.02094 -10.87492 -10.62283 -10.36547 -10.16309 -9.72429 -9.26237 -8.98658 -7.86773 -5.14642 -0.98673 -0.26623 0.66147 1.50423 1.53533 1.58853 1.66660 1.98398 2.06616 2.59804 3.04365 3.12411 3.14188 3.36282 3.48550 3.57456 3.66578 3.82403 3.87187 3.98068 4.15228 4.17694 4.27385 4.34143 4.39580 4.40129 4.46706 4.49462 4.57360 4.64044 4.71914 4.76844 4.84101 4.90191 4.98172 5.01039 5.07883 5.17242 5.18791 5.25482 5.36506 5.38375 5.47347 5.50910 5.58589 5.68603 5.69631 5.89449 6.32643 6.39802 6.77921 7.02791 7.41785 8.11265 8.37055 9.35188 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.003340 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.618739 B = 8380.513541 C =10301.446938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.147 3.853 3 C -0.128 4.128 4 C -0.086 4.086 5 C 0.557 3.443 6 O -0.559 6.559 7 N -0.696 5.696 8 C 0.126 3.874 9 C 0.192 3.808 10 H 0.063 0.937 11 N -0.721 5.721 12 C -0.219 4.219 13 H 0.076 0.924 14 C -0.061 4.061 15 N -0.962 5.962 16 Si 0.953 3.047 17 H -0.288 1.288 18 H -0.307 1.307 19 H -0.275 1.275 20 C -0.167 4.167 21 C -0.174 4.174 22 C -0.170 4.170 23 C -0.091 4.091 24 C -0.124 4.124 25 C -0.113 4.113 26 C -0.088 4.088 27 C -0.109 4.109 28 C 0.106 3.894 29 N -0.473 5.473 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.154 0.846 34 H 0.411 0.589 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.374 0.626 38 H 0.247 0.753 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.169 0.831 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.762 -12.380 -8.419 16.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.005 4.005 3 C -0.149 4.149 4 C -0.097 4.097 5 C 0.345 3.655 6 O -0.440 6.440 7 N -0.347 5.347 8 C 0.002 3.998 9 C 0.083 3.917 10 H 0.081 0.919 11 N -0.361 5.361 12 C -0.351 4.351 13 H 0.094 0.906 14 C -0.254 4.254 15 N -0.613 5.613 16 Si 0.785 3.215 17 H -0.215 1.215 18 H -0.235 1.235 19 H -0.200 1.200 20 C -0.188 4.188 21 C -0.211 4.211 22 C -0.207 4.207 23 C -0.093 4.093 24 C -0.143 4.143 25 C -0.131 4.131 26 C -0.107 4.107 27 C -0.127 4.127 28 C -0.016 4.016 29 N -0.184 5.184 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.171 0.829 34 H 0.249 0.751 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.206 0.794 38 H 0.056 0.944 39 H 0.134 0.866 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.170 0.830 45 H 0.173 0.827 46 H 0.186 0.814 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.066 -13.078 -8.447 17.534 hybrid contribution -1.106 1.475 0.685 1.966 sum 6.960 -11.604 -7.762 15.599 Atomic orbital electron populations 1.20887 0.85921 1.04657 1.04687 1.21871 0.98753 0.87141 0.92772 1.22541 0.93287 1.00884 0.98159 1.20413 0.94262 0.93258 1.01734 1.18176 0.86828 0.83851 0.76669 1.90541 1.14450 1.87100 1.51878 1.45880 1.12020 1.05202 1.71583 1.21596 0.94281 0.81704 1.02182 1.20137 0.88201 0.90518 0.92833 0.91936 1.42536 1.10872 1.65611 1.17057 1.19395 0.89738 1.26080 0.99856 0.90574 1.25251 1.01017 1.02549 0.96594 1.69787 1.34701 1.49399 1.07384 0.85440 0.81758 0.78430 0.75901 1.21485 1.23452 1.20032 1.23047 1.00053 0.92871 1.02879 1.22774 1.02738 1.03711 0.91871 1.22839 0.99785 0.97537 1.00525 1.18872 0.95881 0.92263 1.02307 1.22022 0.93080 1.01217 0.97942 1.21450 1.01998 0.91564 0.98058 1.21383 0.93114 1.00051 0.96183 1.21069 0.95171 0.95617 1.00841 1.19256 0.89042 0.93810 0.99474 1.67695 1.08971 1.29215 1.12499 0.88299 0.89579 0.89463 0.82858 0.75094 0.92424 0.89494 0.79350 0.94430 0.86593 0.90394 0.89210 0.88138 0.90298 0.83016 0.82680 0.81355 0.82962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.14 10.14 71.24 0.72 -1.42 16 2 C 0.15 4.02 6.78 42.95 0.29 4.31 16 3 C -0.13 -3.70 9.21 22.68 0.21 -3.49 16 4 C -0.09 -2.74 5.94 -19.68 -0.12 -2.86 16 5 C 0.56 18.80 7.75 86.80 0.67 19.48 16 6 O -0.56 -20.63 13.53 -3.85 -0.05 -20.68 16 7 N -0.70 -22.16 5.34 -465.92 -2.49 -24.65 16 8 C 0.13 3.92 5.22 86.38 0.45 4.37 16 9 C 0.19 6.46 2.86 44.99 0.13 6.59 16 10 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 11 N -0.72 -30.54 3.08 -322.93 -0.99 -31.54 16 12 C -0.22 -10.42 8.15 84.04 0.69 -9.73 16 13 H 0.08 3.54 6.91 -2.91 -0.02 3.52 16 14 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 15 N -0.96 -53.92 13.06 21.65 0.28 -53.64 16 16 Si 0.95 42.87 29.55 68.60 2.03 44.89 16 17 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 20 C -0.17 -5.20 5.70 -10.79 -0.06 -5.26 16 21 C -0.17 -6.09 9.74 30.62 0.30 -5.79 16 22 C -0.17 -5.49 9.87 30.62 0.30 -5.19 16 23 C -0.09 -2.82 5.76 -21.10 -0.12 -2.95 16 24 C -0.12 -3.53 9.25 22.26 0.21 -3.33 16 25 C -0.11 -2.34 9.96 22.07 0.22 -2.12 16 26 C -0.09 -1.55 9.94 22.03 0.22 -1.33 16 27 C -0.11 -2.40 9.98 22.37 0.22 -2.18 16 28 C 0.11 3.07 6.61 40.33 0.27 3.34 16 29 N -0.47 -13.81 10.19 -176.84 -1.80 -15.61 16 30 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.09 1.74 8.07 -2.39 -0.02 1.72 16 33 H 0.15 4.14 6.55 -2.91 -0.02 4.12 16 34 H 0.41 13.09 6.31 -92.72 -0.59 12.50 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.37 17.90 7.80 -92.71 -0.72 17.18 16 38 H 0.25 13.81 8.31 -92.71 -0.77 13.03 16 39 H 0.12 2.99 8.11 -2.39 -0.02 2.97 16 40 H 0.08 3.44 6.68 -2.39 -0.02 3.42 16 41 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.08 2.95 6.22 -2.39 -0.01 2.93 16 44 H 0.15 4.78 4.98 -2.91 -0.01 4.76 16 45 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 46 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 47 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -62.42 385.48 1.75 -60.68 By element: Atomic # 1 Polarization: 51.08 SS G_CDS: -0.29 Total: 50.79 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 5.06 Total: -10.25 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -5.00 Total: -125.43 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -62.42 1.75 -60.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731409507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.243 kcal (2) G-P(sol) polarization free energy of solvation -62.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds