Wall clock time and date at job start Tue Mar 31 2020 22:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38632 * 120.46907 * 2 1 4 4 C 1.38583 * 118.49060 * 179.97438 * 3 2 1 5 5 C 1.38608 * 119.34634 * 359.97438 * 4 3 2 6 6 N 1.31489 * 120.90246 * 0.02562 * 5 4 3 7 7 C 1.32750 * 121.64424 * 359.68857 * 6 5 4 8 8 C 1.48167 * 119.71950 * 180.30831 * 7 6 5 9 9 O 1.21515 * 119.99208 * 186.06305 * 8 7 6 10 10 N 1.34777 * 120.00607 * 6.06453 * 8 7 6 11 11 C 1.46492 * 120.00137 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47020 * 180.02562 * 11 10 8 13 13 C 1.38233 * 119.99588 * 269.72665 * 12 11 10 14 14 C 1.38240 * 119.99656 * 179.74866 * 13 12 11 15 15 C 1.38238 * 119.99985 * 0.52152 * 14 13 12 16 16 C 1.50694 * 120.00252 * 179.77238 * 15 14 13 17 17 C 1.53007 * 109.47270 * 269.98322 * 16 15 14 18 18 N 1.46498 * 109.47215 * 179.97438 * 17 16 15 19 19 C 1.36940 * 119.99759 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00229 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99670 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00098 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99850 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46875 * 89.99824 * 23 21 19 25 25 H 1.48497 * 109.46689 * 209.99850 * 23 21 19 26 26 H 1.48494 * 109.47016 * 329.99870 * 23 21 19 27 27 C 1.38238 * 119.99798 * 359.75397 * 15 14 13 28 28 C 1.38230 * 120.00166 * 90.00246 * 12 11 10 29 29 H 1.09000 * 109.47284 * 96.73564 * 1 2 3 30 30 H 1.09000 * 109.46720 * 336.73592 * 1 2 3 31 31 H 1.09001 * 109.46657 * 216.73526 * 1 2 3 32 32 H 1.08001 * 120.75826 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.32654 * 179.97438 * 4 3 2 34 34 H 1.08003 * 119.54302 * 180.02562 * 5 4 3 35 35 H 0.96998 * 119.99718 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.47442 * 299.99774 * 11 10 8 37 37 H 1.08996 * 109.47369 * 59.99994 * 11 10 8 38 38 H 1.08004 * 120.00554 * 359.97438 * 13 12 11 39 39 H 1.07997 * 120.00109 * 180.29654 * 14 13 12 40 40 H 1.09003 * 109.46741 * 29.97648 * 16 15 14 41 41 H 1.08993 * 109.47224 * 149.98220 * 16 15 14 42 42 H 1.08998 * 109.46837 * 299.99805 * 17 16 15 43 43 H 1.09002 * 109.46954 * 59.99871 * 17 16 15 44 44 H 0.96995 * 120.00084 * 0.02562 * 18 17 16 45 45 H 0.97000 * 120.00056 * 180.02562 * 22 21 19 46 46 H 1.07994 * 119.99754 * 179.97438 * 27 15 14 47 47 H 1.08002 * 119.99909 * 0.02562 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1470 0.0005 5 6 4.2322 -0.0839 0.0016 6 7 3.5407 -1.2023 0.0016 7 6 2.2132 -1.2003 0.0067 8 6 1.4768 -2.4860 0.0134 9 8 0.2663 -2.4932 -0.0930 10 7 2.1493 -3.6473 0.1376 11 6 1.4212 -4.9184 0.1436 12 6 2.3979 -6.0562 0.2941 13 6 2.9476 -6.6481 -0.8276 14 6 3.8475 -7.6883 -0.6895 15 6 4.1895 -8.1436 0.5701 16 6 5.1666 -9.2810 0.7206 17 6 4.4066 -10.6089 0.7272 18 7 5.3566 -11.7146 0.8729 19 6 4.9037 -13.0065 0.9053 20 1 3.8463 -13.2104 0.8229 21 6 5.8038 -14.0541 1.0439 22 7 7.0925 -13.8057 1.1437 23 14 5.1862 -15.8166 1.0872 24 1 5.1465 -16.3612 -0.2937 25 1 6.0999 -16.6408 1.9184 26 1 3.8214 -15.8485 1.6714 27 6 3.6354 -7.5554 1.6917 28 6 2.7398 -6.5116 1.5537 29 1 -0.3634 -0.1205 -1.0206 30 1 -0.3633 0.9441 0.4059 31 1 -0.3633 -0.8236 0.6147 32 1 1.6902 2.1415 -0.0004 33 1 4.1722 2.0599 0.0001 34 1 5.3115 -0.1249 0.0025 35 1 3.1156 -3.6415 0.2222 36 1 0.7185 -4.9308 0.9769 37 1 0.8755 -5.0291 -0.7934 38 1 2.6768 -6.2955 -1.8119 39 1 4.2807 -8.1476 -1.5657 40 1 5.8694 -9.2688 -0.1125 41 1 5.7120 -9.1698 1.6578 42 1 3.7038 -10.6211 1.5603 43 1 3.8612 -10.7200 -0.2100 44 1 6.3062 -11.5315 0.9472 45 1 7.7215 -14.5378 1.2402 46 1 3.9023 -7.9115 2.6757 47 1 2.3066 -6.0523 2.4299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731705773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:21 Heat of formation + Delta-G solvation = 8.441917 kcal Electronic energy + Delta-G solvation = -26786.032267 eV Core-core repulsion = 22932.630564 eV Total energy + Delta-G solvation = -3853.401702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.79311 -40.62848 -39.79781 -37.24731 -36.19563 -34.66802 -34.12763 -33.13569 -32.40393 -31.85837 -30.00562 -28.44235 -27.05919 -25.65482 -24.84404 -23.65460 -23.29331 -22.97510 -21.86205 -21.57501 -19.28511 -19.21904 -17.87043 -17.11592 -16.94850 -16.74606 -16.61953 -16.35836 -16.28553 -15.98295 -15.51244 -15.39104 -15.16776 -15.08246 -14.76581 -14.52164 -14.27814 -14.04150 -13.78123 -13.69688 -13.58089 -13.51448 -13.23203 -12.95759 -12.93530 -12.87109 -12.50745 -12.37404 -12.14111 -12.02866 -11.81719 -11.69427 -11.15038 -10.95850 -10.78004 -10.47852 -10.28972 -9.88957 -9.82751 -9.56733 -9.03506 -7.97187 -5.27056 -0.35425 0.23254 0.24545 0.49375 1.46847 1.48896 1.57554 1.68910 2.09779 2.54737 2.83229 2.84882 3.19488 3.36268 3.60099 3.75677 3.81685 3.86283 3.86328 3.96950 4.04917 4.12668 4.16998 4.37136 4.44642 4.48159 4.48537 4.55100 4.56047 4.66828 4.73930 4.76806 4.78420 4.79371 5.05300 5.09912 5.10003 5.15036 5.24335 5.25708 5.26421 5.42571 5.44724 5.48787 5.60324 5.68386 5.76922 6.05512 6.25129 6.36068 6.78649 7.09386 7.31269 8.05558 8.30259 9.26209 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030504 B = 0.001534 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.696915 B =18247.374928 C =18840.332027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.088 4.088 4 C -0.131 4.131 5 C 0.079 3.921 6 N -0.477 5.477 7 C 0.041 3.959 8 C 0.564 3.436 9 O -0.555 6.555 10 N -0.700 5.700 11 C 0.169 3.831 12 C -0.117 4.117 13 C -0.096 4.096 14 C -0.125 4.125 15 C -0.070 4.070 16 C -0.079 4.079 17 C 0.162 3.838 18 N -0.747 5.747 19 C -0.252 4.252 20 H 0.074 0.926 21 C -0.074 4.074 22 N -0.968 5.968 23 Si 0.976 3.024 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.270 1.270 27 C -0.125 4.125 28 C -0.096 4.096 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.171 0.829 33 H 0.178 0.822 34 H 0.188 0.812 35 H 0.415 0.585 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.018 0.982 43 H 0.017 0.983 44 H 0.375 0.625 45 H 0.253 0.747 46 H 0.128 0.872 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.800 36.764 -2.490 38.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.113 4.113 4 C -0.151 4.151 5 C -0.081 4.081 6 N -0.188 5.188 7 C -0.095 4.095 8 C 0.351 3.649 9 O -0.434 6.434 10 N -0.351 5.351 11 C 0.046 3.954 12 C -0.117 4.117 13 C -0.114 4.114 14 C -0.143 4.143 15 C -0.071 4.071 16 C -0.117 4.117 17 C 0.036 3.964 18 N -0.390 5.390 19 C -0.383 4.383 20 H 0.092 0.908 21 C -0.266 4.266 22 N -0.619 5.619 23 Si 0.804 3.196 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.195 1.195 27 C -0.143 4.143 28 C -0.114 4.114 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.188 0.812 33 H 0.195 0.805 34 H 0.204 0.796 35 H 0.251 0.749 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.036 0.964 43 H 0.035 0.965 44 H 0.207 0.793 45 H 0.061 0.939 46 H 0.146 0.854 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.412 35.761 -2.564 37.334 hybrid contribution 0.439 -0.631 0.077 0.772 sum -9.974 35.130 -2.487 36.603 Atomic orbital electron populations 1.20990 0.88930 1.03751 1.03327 1.21162 0.98742 0.92911 0.96106 1.21974 0.94763 0.98321 0.96266 1.22828 0.95225 1.00729 0.96273 1.23367 1.01779 0.87297 0.95640 1.67490 1.06833 1.33742 1.10742 1.20881 0.90495 0.93357 1.04787 1.18204 0.86433 0.83817 0.76471 1.90727 1.14106 1.87182 1.51401 1.45945 1.11955 1.04780 1.72409 1.20169 0.92461 0.79543 1.03207 1.19779 0.99933 0.98376 0.93652 1.21200 0.95845 0.95433 0.98966 1.21215 0.98683 0.97445 0.96964 1.19910 0.97193 0.95871 0.94099 1.20635 0.96623 0.91466 1.02932 1.20696 0.92030 0.86345 0.97375 1.42584 1.05865 1.01977 1.88586 1.19646 0.92871 0.84628 1.41186 0.90815 1.25601 0.95571 1.02158 1.03293 1.69816 1.01637 1.31835 1.58582 0.85107 0.77398 0.79661 0.77391 1.21229 1.21882 1.19499 1.21214 0.97718 0.96755 0.98618 1.21197 0.96818 0.96079 0.97346 0.90947 0.89751 0.90487 0.81158 0.80479 0.79561 0.74851 0.90253 0.90351 0.84377 0.85399 0.90943 0.90929 0.96450 0.96458 0.79299 0.93868 0.85375 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 8.75 71.24 0.62 -1.02 16 2 C -0.09 -1.32 5.93 -19.52 -0.12 -1.43 16 3 C -0.09 -0.76 9.83 22.45 0.22 -0.54 16 4 C -0.13 -0.85 10.12 22.44 0.23 -0.62 16 5 C 0.08 0.85 11.18 84.83 0.95 1.79 16 6 N -0.48 -8.26 9.56 -184.91 -1.77 -10.03 16 7 C 0.04 0.80 6.75 41.89 0.28 1.08 16 8 C 0.56 12.51 7.75 86.88 0.67 13.18 16 9 O -0.56 -14.44 13.30 -3.76 -0.05 -14.49 16 10 N -0.70 -13.60 5.54 -469.41 -2.60 -16.19 16 11 C 0.17 3.17 5.80 85.64 0.50 3.66 16 12 C -0.12 -2.36 5.25 -19.87 -0.10 -2.47 16 13 C -0.10 -2.04 9.70 22.27 0.22 -1.82 16 14 C -0.13 -3.12 9.70 22.27 0.22 -2.91 16 15 C -0.07 -1.94 5.13 -19.87 -0.10 -2.05 16 16 C -0.08 -2.60 5.46 29.85 0.16 -2.44 16 17 C 0.16 6.74 6.24 86.38 0.54 7.28 16 18 N -0.75 -39.29 5.60 -343.44 -1.92 -41.22 16 19 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 20 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 21 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 22 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 23 Si 0.98 46.71 29.55 68.60 2.03 48.74 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 C -0.13 -3.11 9.70 22.27 0.22 -2.90 16 28 C -0.10 -2.02 9.70 22.27 0.22 -1.81 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 0.75 8.05 -2.39 -0.02 0.73 16 31 H 0.08 1.50 5.83 -2.39 -0.01 1.49 16 32 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 33 H 0.18 -0.18 8.06 -2.91 -0.02 -0.20 16 34 H 0.19 0.90 8.06 -2.91 -0.02 0.87 16 35 H 0.41 7.69 7.81 -92.71 -0.72 6.96 16 36 H 0.08 1.48 8.09 -2.38 -0.02 1.46 16 37 H 0.08 1.48 8.08 -2.39 -0.02 1.46 16 38 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 39 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.07 2.38 8.09 -2.39 -0.02 2.36 16 41 H 0.07 2.38 8.08 -2.39 -0.02 2.36 16 42 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.38 20.67 7.67 -92.71 -0.71 19.96 16 45 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 46 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 47 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -72.88 399.09 1.55 -71.33 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: -0.44 Total: 32.02 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 6.02 Total: -10.50 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -6.01 Total: -127.09 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.05 Total: -14.49 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -72.88 1.55 -71.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731705773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.773 kcal (2) G-P(sol) polarization free energy of solvation -72.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds