Wall clock time and date at job start Tue Mar 31 2020 22:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39311 * 119.06040 * 2 1 4 4 C 1.38860 * 119.57649 * 180.02562 * 3 2 1 5 5 C 1.47908 * 121.10836 * 179.97438 * 4 3 2 6 6 O 1.21537 * 119.99925 * 184.66588 * 5 4 3 7 7 N 1.34783 * 120.00210 * 4.66357 * 5 4 3 8 8 C 1.46492 * 119.99932 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47099 * 180.02562 * 8 7 5 10 10 N 1.46502 * 109.47412 * 179.97438 * 9 8 7 11 11 C 1.36940 * 119.99870 * 270.00358 * 10 9 8 12 12 H 1.08000 * 119.99661 * 141.20439 * 11 10 9 13 13 C 1.38809 * 119.99961 * 321.20070 * 11 10 9 14 14 N 1.31621 * 120.00177 * 339.99316 * 13 11 10 15 15 Si 1.86807 * 119.99974 * 160.00001 * 13 11 10 16 16 H 1.48496 * 109.47157 * 89.99663 * 15 13 11 17 17 H 1.48494 * 109.47085 * 210.00236 * 15 13 11 18 18 H 1.48499 * 109.46596 * 329.99665 * 15 13 11 19 19 C 1.46497 * 119.99930 * 89.99839 * 10 9 8 20 20 C 1.53001 * 117.50043 * 183.28134 * 19 10 9 21 21 C 1.53002 * 117.49438 * 114.62310 * 19 10 9 22 22 C 1.41819 * 117.77980 * 0.25545 * 4 3 2 23 23 C 1.40097 * 121.37116 * 179.72483 * 22 4 3 24 24 C 1.36254 * 119.64360 * 180.02562 * 23 22 4 25 25 C 1.39346 * 120.83389 * 0.02562 * 24 23 22 26 26 C 1.36072 * 121.04967 * 359.43150 * 25 24 23 27 27 C 1.40711 * 119.73621 * 0.82475 * 26 25 24 28 28 N 1.30974 * 119.05653 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47566 * 89.99632 * 1 2 3 30 30 H 1.09000 * 109.47279 * 210.00119 * 1 2 3 31 31 H 1.09000 * 109.47068 * 329.99140 * 1 2 3 32 32 H 1.07998 * 120.21138 * 0.02562 * 3 2 1 33 33 H 0.97002 * 119.99554 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.47342 * 60.00110 * 8 7 5 35 35 H 1.09002 * 109.47091 * 300.00037 * 8 7 5 36 36 H 1.09007 * 109.47354 * 59.99792 * 9 8 7 37 37 H 1.08994 * 109.47055 * 300.00289 * 9 8 7 38 38 H 0.97005 * 120.00189 * 175.02140 * 14 13 11 39 39 H 1.09003 * 115.55001 * 328.96072 * 19 10 9 40 40 H 1.08996 * 117.49538 * 0.02562 * 20 19 10 41 41 H 1.08994 * 117.49713 * 145.02079 * 20 19 10 42 42 H 1.09004 * 117.49738 * 214.97807 * 21 19 10 43 43 H 1.08992 * 117.50205 * 359.97438 * 21 19 10 44 44 H 1.08001 * 120.17998 * 359.97438 * 23 22 4 45 45 H 1.07997 * 119.57999 * 179.97438 * 24 23 22 46 46 H 1.08004 * 119.47491 * 179.97438 * 25 24 23 47 47 H 1.07996 * 120.13000 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2177 0.0000 4 6 3.5722 1.2302 -0.0005 5 6 4.3249 2.5034 -0.0011 6 8 5.5372 2.4926 -0.0872 7 7 3.6665 3.6757 0.0938 8 6 4.4121 4.9367 0.0926 9 6 3.4342 6.1074 0.2108 10 7 4.1798 7.3685 0.2102 11 6 4.6123 7.9087 1.3919 12 1 5.5810 8.3830 1.4463 13 6 3.8055 7.8467 2.5198 14 7 2.5113 7.6432 2.3929 15 14 4.5566 8.0523 4.2179 16 1 4.5455 9.4889 4.5934 17 1 3.7656 7.2760 5.2062 18 1 5.9558 7.5551 4.2036 19 6 4.4627 8.0516 -1.0545 20 6 5.3110 9.3236 -0.9960 21 6 3.8100 9.4167 -1.2815 22 6 4.2445 -0.0185 -0.0067 23 6 5.6434 -0.0936 -0.0134 24 6 6.2528 -1.3123 -0.0197 25 6 5.5021 -2.4862 -0.0201 26 6 4.1420 -2.4495 -0.0026 27 6 3.4772 -1.2094 -0.0014 28 7 2.1431 -1.1449 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.6318 2.1461 0.0004 33 1 2.6990 3.6842 0.1628 34 1 4.9748 5.0253 -0.8367 35 1 5.1008 4.9523 0.9373 36 1 2.8717 6.0187 1.1403 37 1 2.7452 6.0919 -0.6336 38 1 1.9588 7.5278 3.1818 39 1 4.5874 7.4029 -1.9215 40 1 5.6588 9.6520 -0.0166 41 1 5.9934 9.5119 -1.8247 42 1 3.5056 9.6662 -2.2980 43 1 3.1697 9.8062 -0.4901 44 1 6.2356 0.8095 -0.0144 45 1 7.3313 -1.3690 -0.0252 46 1 6.0079 -3.4405 -0.0255 47 1 3.5749 -3.3686 -0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731885687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:30 Heat of formation + Delta-G solvation = 53.889142 kcal Electronic energy + Delta-G solvation = -28452.135772 eV Core-core repulsion = 24600.704810 eV Total energy + Delta-G solvation = -3851.430963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.22644 -40.45891 -38.83111 -38.39286 -36.43908 -35.09073 -34.53263 -32.98885 -32.74767 -31.17189 -29.41702 -28.65863 -26.54143 -25.50880 -24.23914 -23.51242 -23.17317 -22.82104 -21.76195 -21.45532 -19.06593 -18.73942 -18.44202 -18.01454 -17.28933 -16.97380 -16.59388 -16.39105 -16.30250 -15.84099 -15.78846 -15.53697 -15.46498 -14.62057 -14.51757 -14.46830 -14.20433 -14.06603 -13.89845 -13.77026 -13.29049 -13.08897 -12.95153 -12.63080 -12.61409 -12.50376 -12.35555 -12.31760 -12.16695 -11.94613 -11.70298 -11.59153 -11.45230 -11.36628 -10.92460 -10.52146 -10.39045 -10.19824 -9.73412 -9.28610 -8.55079 -7.84854 -5.54335 -0.99903 -0.27595 0.63955 1.40908 1.45814 1.53756 1.65565 1.90525 2.05107 2.47019 3.03427 3.12497 3.13689 3.29920 3.40196 3.52828 3.59899 3.68212 3.81418 4.13170 4.14726 4.29941 4.33559 4.35537 4.37249 4.42171 4.45694 4.51343 4.59415 4.68592 4.77316 4.82257 4.86676 4.95157 4.98863 5.03589 5.06474 5.16057 5.21980 5.29058 5.36334 5.39871 5.49407 5.55805 5.55863 5.63984 5.72121 5.87088 6.37315 6.44969 6.78281 7.02764 7.12318 7.77906 8.29369 9.05921 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012846 B = 0.002670 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.060094 B =10482.685308 C =10618.336226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.147 3.853 3 C -0.124 4.124 4 C -0.087 4.087 5 C 0.554 3.446 6 O -0.563 6.563 7 N -0.698 5.698 8 C 0.119 3.881 9 C 0.148 3.852 10 N -0.564 5.564 11 C -0.265 4.265 12 H 0.056 0.944 13 C -0.024 4.024 14 N -0.905 5.905 15 Si 0.945 3.055 16 H -0.284 1.284 17 H -0.288 1.288 18 H -0.278 1.278 19 C 0.100 3.900 20 C -0.185 4.185 21 C -0.211 4.211 22 C -0.093 4.093 23 C -0.129 4.129 24 C -0.115 4.115 25 C -0.089 4.089 26 C -0.107 4.107 27 C 0.108 3.892 28 N -0.475 5.475 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.171 0.829 33 H 0.412 0.588 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.253 0.747 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.057 0.943 44 H 0.147 0.853 45 H 0.151 0.849 46 H 0.168 0.832 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.361 -18.110 -7.165 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.006 4.006 3 C -0.144 4.144 4 C -0.098 4.098 5 C 0.341 3.659 6 O -0.444 6.444 7 N -0.349 5.349 8 C -0.006 4.006 9 C 0.021 3.979 10 N -0.282 5.282 11 C -0.395 4.395 12 H 0.073 0.927 13 C -0.223 4.223 14 N -0.548 5.548 15 Si 0.773 3.227 16 H -0.210 1.210 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.008 4.008 20 C -0.223 4.223 21 C -0.252 4.252 22 C -0.095 4.095 23 C -0.147 4.147 24 C -0.133 4.133 25 C -0.109 4.109 26 C -0.125 4.125 27 C -0.013 4.013 28 N -0.185 5.185 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.188 0.812 33 H 0.250 0.750 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.130 0.870 40 H 0.092 0.908 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.075 0.925 44 H 0.164 0.836 45 H 0.169 0.831 46 H 0.185 0.815 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.040 -18.853 -7.083 20.242 hybrid contribution 0.481 1.387 1.221 1.909 sum -1.560 -17.465 -5.862 18.489 Atomic orbital electron populations 1.20926 0.85212 1.05139 1.04808 1.22032 0.99070 0.87004 0.92450 1.22630 0.92599 1.01400 0.97807 1.20369 0.94753 0.92526 1.02108 1.18378 0.86948 0.83999 0.76545 1.90566 1.15003 1.87100 1.51708 1.45824 1.11554 1.05171 1.72333 1.21957 0.96051 0.82531 1.00109 1.20896 0.92153 0.82669 1.02204 1.43363 1.64003 1.19766 1.01065 1.19131 0.97788 1.34765 0.87865 0.92689 1.25729 0.94712 1.00295 1.01520 1.70125 1.03743 1.51686 1.29250 0.85657 0.78219 0.77606 0.81219 1.21039 1.21399 1.20307 1.21549 1.02169 0.87206 0.89884 1.23045 0.93728 1.03393 1.02145 1.23252 0.95038 1.06030 1.00845 1.18876 0.95643 0.92633 1.02379 1.22019 0.93537 1.01018 0.98113 1.21429 1.01901 0.91731 0.98206 1.21369 0.93314 0.99838 0.96346 1.21086 0.95013 0.95825 1.00620 1.19189 0.89174 0.93517 0.99462 1.67709 1.08652 1.29652 1.12471 0.88380 0.89855 0.88162 0.81197 0.75018 0.92745 0.94341 0.90510 0.93161 0.93717 0.87047 0.90778 0.87281 0.87932 0.92450 0.83594 0.83131 0.81464 0.82760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.14 71.24 0.72 -0.62 16 2 C 0.15 3.15 6.78 42.94 0.29 3.44 16 3 C -0.12 -2.77 9.21 22.68 0.21 -2.56 16 4 C -0.09 -2.52 5.94 -19.68 -0.12 -2.64 16 5 C 0.55 18.69 7.76 86.80 0.67 19.36 16 6 O -0.56 -22.48 13.51 -3.83 -0.05 -22.53 16 7 N -0.70 -22.01 5.51 -465.93 -2.57 -24.58 16 8 C 0.12 4.58 6.00 86.38 0.52 5.10 16 9 C 0.15 6.17 5.45 86.38 0.47 6.64 16 10 N -0.56 -26.32 2.75 -678.02 -1.87 -28.19 16 11 C -0.27 -13.83 8.50 84.03 0.71 -13.12 16 12 H 0.06 2.94 6.71 -2.91 -0.02 2.92 16 13 C -0.02 -1.27 4.98 84.86 0.42 -0.85 16 14 N -0.91 -49.11 11.47 21.65 0.25 -48.86 16 15 Si 0.94 43.39 29.60 68.60 2.03 45.42 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 C 0.10 3.97 6.56 44.99 0.30 4.27 16 20 C -0.19 -6.86 9.80 30.62 0.30 -6.56 16 21 C -0.21 -8.04 10.36 30.62 0.32 -7.72 16 22 C -0.09 -2.76 5.76 -21.10 -0.12 -2.88 16 23 C -0.13 -3.73 9.25 22.26 0.21 -3.52 16 24 C -0.11 -2.45 9.96 22.07 0.22 -2.23 16 25 C -0.09 -1.55 9.94 22.03 0.22 -1.33 16 26 C -0.11 -2.22 9.99 22.37 0.22 -2.00 16 27 C 0.11 2.89 6.61 40.33 0.27 3.15 16 28 N -0.47 -12.01 10.19 -176.84 -1.80 -13.81 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 0.93 8.07 -2.39 -0.02 0.91 16 32 H 0.17 2.71 6.54 -2.91 -0.02 2.69 16 33 H 0.41 10.46 6.63 -92.71 -0.61 9.85 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 3.64 5.55 -2.38 -0.01 3.63 16 37 H 0.05 1.90 8.07 -2.39 -0.02 1.89 16 38 H 0.25 13.33 8.32 -92.70 -0.77 12.56 16 39 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 40 H 0.07 3.11 6.45 -2.39 -0.02 3.10 16 41 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 43 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.15 4.90 4.97 -2.91 -0.01 4.89 16 45 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 46 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 47 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -68.00 387.95 2.21 -65.79 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.39 Total: 30.83 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 5.83 Total: -4.08 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -5.99 Total: -115.44 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -68.00 2.21 -65.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731885687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.681 kcal (2) G-P(sol) polarization free energy of solvation -68.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds