Wall clock time and date at job start Tue Mar 31 2020 22:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38227 * 119.61686 * 2 1 4 4 C 1.38636 * 119.15422 * 179.97438 * 3 2 1 5 5 C 1.38668 * 118.42576 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.41986 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46817 * 89.99748 * 6 5 4 8 8 O 1.21279 * 120.00072 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99762 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47551 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47318 * 295.00450 * 11 10 9 13 13 N 1.46501 * 109.46854 * 55.00261 * 11 10 9 14 14 C 1.36939 * 119.99786 * 205.00019 * 13 11 10 15 15 H 1.07994 * 120.00615 * 0.02562 * 14 13 11 16 16 C 1.38818 * 119.99654 * 179.97438 * 14 13 11 17 17 N 1.31625 * 119.99763 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00104 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47168 * 90.00055 * 18 16 14 20 20 H 1.48506 * 109.46967 * 209.99800 * 18 16 14 21 21 H 1.48493 * 109.47353 * 329.99722 * 18 16 14 22 22 C 1.50700 * 109.47590 * 175.00033 * 11 10 9 23 23 C 1.38235 * 119.99848 * 279.73335 * 22 11 10 24 24 C 1.38241 * 119.99435 * 179.78556 * 23 22 11 25 25 C 1.38235 * 120.00302 * 0.43517 * 24 23 22 26 26 C 1.38239 * 119.99776 * 359.81592 * 25 24 23 27 27 C 1.38231 * 120.00015 * 359.97438 * 26 25 24 28 28 C 1.38182 * 119.16018 * 0.26788 * 5 4 3 29 29 N 1.31852 * 119.61427 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46413 * 89.99863 * 1 2 3 31 31 H 1.08991 * 109.47313 * 210.00342 * 1 2 3 32 32 H 1.09005 * 109.47090 * 330.01173 * 1 2 3 33 33 H 1.07990 * 120.42532 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.78144 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.46670 * 329.99972 * 6 5 4 36 36 H 1.09000 * 109.47247 * 209.99685 * 6 5 4 37 37 H 0.96999 * 120.00047 * 0.02562 * 9 7 6 38 38 H 1.09000 * 109.47024 * 300.00478 * 10 9 7 39 39 H 1.09004 * 109.46875 * 60.00324 * 10 9 7 40 40 H 0.96998 * 120.00221 * 25.00060 * 13 11 10 41 41 H 0.97000 * 119.99832 * 179.97438 * 17 16 14 42 42 H 1.07996 * 120.00487 * 359.97438 * 23 22 11 43 43 H 1.08005 * 119.99560 * 180.27266 * 24 23 22 44 44 H 1.07993 * 119.99759 * 179.83478 * 25 24 23 45 45 H 1.08003 * 119.99688 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.99762 * 179.97438 * 27 26 25 47 47 H 1.08003 * 119.61917 * 179.70417 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5765 1.1905 0.0005 5 6 4.2267 -0.0343 0.0005 6 6 5.7323 -0.0989 0.0005 7 6 6.2341 -0.1204 1.4214 8 8 5.4467 -0.0861 2.3432 9 7 7.5580 -0.1777 1.6677 10 6 8.0459 -0.1980 3.0489 11 6 9.5744 -0.2637 3.0489 12 1 9.8975 -1.2100 2.6150 13 7 10.1108 0.8454 2.2562 14 6 11.3490 0.7397 1.6809 15 1 11.9300 -0.1613 1.8112 16 6 11.8571 1.7904 0.9294 17 7 13.0474 1.6891 0.3768 18 14 10.8521 3.3487 0.7034 19 1 11.1679 4.3041 1.7954 20 1 11.1838 3.9661 -0.6059 21 1 9.4057 3.0146 0.7407 22 6 10.0817 -0.1609 4.4642 23 6 10.1744 1.0746 5.0772 24 6 10.6356 1.1684 6.3770 25 6 11.0125 0.0276 7.0607 26 6 10.9246 -1.2074 6.4459 27 6 10.4594 -1.3017 5.1477 28 6 3.4766 -1.1948 -0.0057 29 7 2.1586 -1.1463 0.0005 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5137 33 1 1.6509 2.1373 -0.0004 34 1 4.1367 2.1139 0.0001 35 1 6.1334 0.7747 -0.5133 36 1 6.0572 -1.0037 -0.5133 37 1 8.1877 -0.2047 0.9304 38 1 7.7215 0.7072 3.5622 39 1 7.6444 -1.0712 3.5632 40 1 9.5890 1.6545 2.1388 41 1 13.4023 2.4232 -0.1487 42 1 9.8838 1.9663 4.5417 43 1 10.7039 2.1333 6.8574 44 1 11.3752 0.1012 8.0752 45 1 11.2194 -2.0987 6.9800 46 1 10.3911 -2.2665 4.6672 47 1 3.9754 -2.1528 -0.0106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732027848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:11 Heat of formation + Delta-G solvation = 11.292895 kcal Electronic energy + Delta-G solvation = -28092.052859 eV Core-core repulsion = 24238.774784 eV Total energy + Delta-G solvation = -3853.278075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.48508 -40.63620 -39.99479 -37.54195 -35.25641 -35.00738 -33.76468 -33.22472 -31.89278 -31.54408 -31.05299 -29.07424 -26.96056 -25.29437 -24.51102 -24.10645 -23.23895 -22.61678 -21.53754 -21.18405 -19.83726 -18.16962 -17.72605 -17.64047 -17.35554 -16.94423 -16.86273 -16.18288 -16.04067 -15.87171 -15.67031 -15.45235 -15.08897 -14.84750 -14.44963 -14.37693 -14.22827 -14.13171 -14.05649 -13.85114 -13.53160 -13.29983 -13.20403 -13.04666 -12.95701 -12.84578 -12.47705 -12.43088 -12.16029 -12.04469 -11.77323 -11.70629 -11.14454 -10.99727 -10.70035 -10.42385 -10.08017 -9.72424 -9.70047 -9.59300 -9.30785 -7.99187 -5.34533 0.11815 0.34653 0.56339 0.62349 1.37408 1.41542 1.48235 1.64182 2.23530 2.49084 2.85330 2.99304 3.33177 3.38603 3.49102 3.69237 3.82369 3.95410 4.00562 4.02260 4.05802 4.11048 4.19422 4.32281 4.32599 4.37933 4.40355 4.55498 4.67238 4.70240 4.73390 4.76303 4.79342 4.81233 4.87172 4.99378 5.16542 5.19756 5.20214 5.27504 5.32374 5.44027 5.67762 5.70233 5.77938 5.79838 5.87918 6.23443 6.24299 6.57648 7.03505 7.07509 7.24507 7.79434 7.99760 9.21984 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010519 B = 0.002883 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.098872 B = 9709.838106 C =11458.615428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.104 3.896 3 C -0.174 4.174 4 C -0.072 4.072 5 C -0.129 4.129 6 C -0.093 4.093 7 C 0.513 3.487 8 O -0.582 6.582 9 N -0.715 5.715 10 C 0.131 3.869 11 C 0.210 3.790 12 H 0.073 0.927 13 N -0.735 5.735 14 C -0.216 4.216 15 H 0.059 0.941 16 C -0.054 4.054 17 N -0.981 5.981 18 Si 0.943 3.057 19 H -0.291 1.291 20 H -0.299 1.299 21 H -0.245 1.245 22 C -0.103 4.103 23 C -0.113 4.113 24 C -0.136 4.136 25 C -0.132 4.132 26 C -0.127 4.127 27 C -0.127 4.127 28 C 0.100 3.900 29 N -0.512 5.512 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.160 0.840 34 H 0.146 0.854 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.415 0.585 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.366 0.634 41 H 0.256 0.744 42 H 0.104 0.896 43 H 0.131 0.869 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.132 0.868 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.850 -3.088 2.788 19.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.034 4.034 3 C -0.194 4.194 4 C -0.098 4.098 5 C -0.131 4.131 6 C -0.133 4.133 7 C 0.301 3.699 8 O -0.462 6.462 9 N -0.367 5.367 10 C 0.006 3.994 11 C 0.101 3.899 12 H 0.091 0.909 13 N -0.378 5.378 14 C -0.347 4.347 15 H 0.077 0.923 16 C -0.246 4.246 17 N -0.632 5.632 18 Si 0.772 3.228 19 H -0.218 1.218 20 H -0.226 1.226 21 H -0.169 1.169 22 C -0.106 4.106 23 C -0.132 4.132 24 C -0.154 4.154 25 C -0.149 4.149 26 C -0.145 4.145 27 C -0.146 4.146 28 C -0.056 4.056 29 N -0.222 5.222 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.177 0.823 34 H 0.164 0.836 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.252 0.748 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.199 0.801 41 H 0.065 0.935 42 H 0.122 0.878 43 H 0.149 0.851 44 H 0.161 0.839 45 H 0.162 0.838 46 H 0.150 0.850 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -19.694 -3.940 3.358 20.363 hybrid contribution 1.117 1.965 -0.538 2.324 sum -18.577 -1.975 2.820 18.893 Atomic orbital electron populations 1.20772 0.86902 1.04084 1.03950 1.21863 0.98568 0.88425 0.94522 1.22234 0.94698 1.00127 1.02299 1.21785 0.95149 0.98289 0.94564 1.20429 0.95872 0.94696 1.02116 1.20644 0.91394 1.08100 0.93193 1.20990 0.81767 0.75149 0.92013 1.90695 1.56216 1.51538 1.47791 1.46000 1.07208 1.74108 1.09360 1.21415 0.92689 1.01981 0.83340 1.19484 0.90525 0.92283 0.87579 0.90898 1.42681 1.18014 1.16654 1.60442 1.18870 0.92682 1.00584 1.22590 0.92286 1.25332 0.97474 1.01138 1.00618 1.69867 1.19314 1.33720 1.40264 0.85594 0.80073 0.80619 0.76530 1.21756 1.22598 1.16925 1.20806 0.99317 0.93790 0.96685 1.20983 0.99824 0.97304 0.95068 1.21376 0.99775 0.99633 0.94642 1.21406 1.00247 0.92429 1.00868 1.21416 0.99542 0.98582 0.94977 1.21279 0.99648 0.98197 0.95451 1.22831 0.89366 0.98668 0.94775 1.67530 1.10275 1.30543 1.13881 0.89189 0.91118 0.88858 0.82258 0.83584 0.85727 0.84853 0.74837 0.92687 0.90410 0.80060 0.93504 0.87761 0.85080 0.83893 0.83782 0.85009 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.17 71.24 0.72 -0.70 16 2 C 0.10 2.23 6.78 42.55 0.29 2.52 16 3 C -0.17 -3.36 9.75 22.36 0.22 -3.14 16 4 C -0.07 -1.52 9.86 22.47 0.22 -1.30 16 5 C -0.13 -2.89 4.39 -19.78 -0.09 -2.98 16 6 C -0.09 -1.80 5.86 29.10 0.17 -1.63 16 7 C 0.51 13.89 7.82 87.66 0.69 14.58 16 8 O -0.58 -20.38 16.03 -3.03 -0.05 -20.43 16 9 N -0.71 -19.31 5.39 -463.07 -2.49 -21.81 16 10 C 0.13 3.88 5.21 86.38 0.45 4.33 16 11 C 0.21 7.06 2.65 44.24 0.12 7.17 16 12 H 0.07 2.47 7.94 -2.39 -0.02 2.45 16 13 N -0.74 -29.79 3.59 -326.51 -1.17 -30.97 16 14 C -0.22 -11.09 10.40 84.03 0.87 -10.21 16 15 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 16 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16 17 N -0.98 -59.77 13.97 21.65 0.30 -59.47 16 18 Si 0.94 42.37 27.74 68.60 1.90 44.27 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 21 H -0.25 -9.55 6.52 99.48 0.65 -8.90 16 22 C -0.10 -3.46 4.92 -19.87 -0.10 -3.56 16 23 C -0.11 -3.89 9.33 22.27 0.21 -3.68 16 24 C -0.14 -4.02 10.05 22.27 0.22 -3.80 16 25 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 26 C -0.13 -3.30 10.05 22.27 0.22 -3.07 16 27 C -0.13 -3.75 9.67 22.27 0.22 -3.53 16 28 C 0.10 2.41 10.86 84.67 0.92 3.33 16 29 N -0.51 -13.20 10.27 -183.88 -1.89 -15.09 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 0.93 8.08 -2.38 -0.02 0.91 16 33 H 0.16 2.06 8.06 -2.92 -0.02 2.04 16 34 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 35 H 0.12 1.97 8.10 -2.39 -0.02 1.95 16 36 H 0.13 1.87 8.09 -2.39 -0.02 1.85 16 37 H 0.41 10.75 8.14 -92.71 -0.75 9.99 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 39 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 40 H 0.37 14.58 5.66 -92.71 -0.52 14.05 16 41 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 42 H 0.10 3.73 7.71 -2.91 -0.02 3.71 16 43 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 44 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 45 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 46 H 0.13 3.36 8.04 -2.91 -0.02 3.34 16 47 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -73.19 400.07 2.29 -70.89 By element: Atomic # 1 Polarization: 44.28 SS G_CDS: -0.35 Total: 43.92 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 6.05 Total: -11.33 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -5.26 Total: -127.34 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.05 Total: -20.43 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.90 Total: 44.27 kcal Total: -73.19 2.29 -70.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732027848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.187 kcal (2) G-P(sol) polarization free energy of solvation -73.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds