Wall clock time and date at job start Tue Mar 31 2020 23:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38045 * 126.29186 * 2 1 4 4 C 1.47434 * 126.41434 * 359.75509 * 3 2 1 5 5 O 1.21611 * 119.99828 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00034 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99642 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.46758 * 180.02562 * 7 6 4 9 9 H 1.09004 * 109.47265 * 305.00324 * 8 7 6 10 10 O 1.42904 * 109.47296 * 65.00512 * 8 7 6 11 11 C 1.52996 * 109.47189 * 185.00216 * 8 7 6 12 12 N 1.46900 * 109.47211 * 180.02562 * 11 8 7 13 13 C 1.46907 * 110.99698 * 180.02562 * 12 11 8 14 14 C 1.50705 * 109.46814 * 179.97438 * 13 12 11 15 15 O 1.21295 * 120.00204 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00206 * 179.97438 * 14 13 12 17 17 C 1.37090 * 120.00344 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00161 * 359.97438 * 17 16 14 19 19 C 1.38953 * 120.00124 * 180.02562 * 17 16 14 20 20 N 1.31414 * 119.99835 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47108 * 59.99902 * 21 19 17 23 23 H 1.48496 * 109.46841 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47022 * 299.99532 * 21 19 17 25 25 C 1.41284 * 107.17463 * 180.02562 * 3 2 1 26 26 N 1.30451 * 108.02018 * 0.02562 * 25 3 2 27 27 N 1.34258 * 126.29139 * 180.02562 * 2 1 3 28 28 C 1.46492 * 125.75601 * 359.97438 * 27 2 1 29 29 H 1.09000 * 109.47279 * 89.99979 * 1 2 3 30 30 H 1.08999 * 109.47503 * 209.99917 * 1 2 3 31 31 H 1.08997 * 109.47292 * 330.00295 * 1 2 3 32 32 H 0.97001 * 120.00327 * 0.02562 * 6 4 3 33 33 H 1.08997 * 109.47826 * 300.00180 * 7 6 4 34 34 H 1.08997 * 109.47118 * 60.00950 * 7 6 4 35 35 H 0.96696 * 114.00080 * 59.99374 * 10 8 7 36 36 H 1.09004 * 109.47105 * 300.00206 * 11 8 7 37 37 H 1.09002 * 109.47248 * 60.00076 * 11 8 7 38 38 H 1.00899 * 111.00524 * 56.04983 * 12 11 8 39 39 H 1.09003 * 109.47143 * 299.99143 * 13 12 11 40 40 H 1.08995 * 109.47833 * 60.00093 * 13 12 11 41 41 H 0.96999 * 119.99481 * 0.02562 * 16 14 13 42 42 H 0.97001 * 119.99816 * 180.02562 * 20 19 17 43 43 H 1.08001 * 125.99432 * 179.97438 * 25 3 2 44 44 H 1.09002 * 109.47071 * 89.99399 * 28 27 2 45 45 H 1.08993 * 109.47378 * 209.99671 * 28 27 2 46 46 H 1.09001 * 109.47475 * 330.00309 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0051 5 8 0.6995 2.7878 -0.0094 6 7 2.7999 3.5107 -0.0039 7 6 2.3643 4.9095 -0.0095 8 6 3.5900 5.8253 -0.0075 9 1 4.2307 5.5729 0.8375 10 8 4.3169 5.6509 -1.2254 11 6 3.1380 7.2820 0.1125 12 7 4.3147 8.1613 0.1138 13 6 3.9182 9.5712 0.2285 14 6 5.1491 10.4408 0.2271 15 8 6.2484 9.9358 0.1397 16 7 5.0284 11.7797 0.3230 17 6 6.1480 12.5708 0.3213 18 1 7.1268 12.1212 0.2435 19 6 6.0235 13.9512 0.4207 20 7 4.8325 14.4983 0.5159 21 14 7.5491 15.0291 0.4190 22 1 8.2969 14.8266 -0.8479 23 1 7.1483 16.4543 0.5343 24 1 8.4149 14.6633 1.5687 25 6 3.6590 0.6500 -0.0006 26 7 3.6340 -0.6543 -0.0015 27 7 2.3016 -1.0821 -0.0005 28 6 1.8501 -2.4757 -0.0006 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 3.7461 3.2974 -0.0001 33 1 1.7694 5.1013 -0.9024 34 1 1.7621 5.1060 0.8775 35 1 3.8074 5.8579 -2.0207 36 1 2.4972 7.5344 -0.7325 37 1 2.5835 7.4151 1.0414 38 1 4.8801 8.0101 -0.7081 39 1 3.2824 9.8396 -0.6152 40 1 3.3698 9.7200 1.1586 41 1 4.1492 12.1836 0.3933 42 1 4.7455 15.4620 0.5849 43 1 4.5449 1.2677 -0.0012 44 1 1.7377 -2.8212 -1.0283 45 1 2.5849 -3.0958 0.5128 46 1 0.8916 -2.5472 0.5135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732634780.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:02 Heat of formation + Delta-G solvation = -48.778799 kcal Electronic energy + Delta-G solvation = -27842.411279 eV Core-core repulsion = 23575.679037 eV Total energy + Delta-G solvation = -4266.732242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.87190 -39.59063 -38.45892 -37.79908 -34.94252 -34.56252 -33.96266 -33.76168 -32.38012 -31.22439 -30.45552 -28.26822 -27.32350 -26.81660 -24.87051 -23.42143 -22.53805 -21.88221 -20.82515 -20.01200 -19.23782 -18.03288 -17.87824 -17.10364 -16.57098 -16.28419 -16.14368 -15.76489 -15.53576 -15.27372 -14.94278 -14.71279 -14.47265 -14.44063 -13.89799 -13.76993 -13.64457 -13.54690 -13.40363 -13.15964 -13.01160 -12.89837 -12.75133 -12.58641 -12.33553 -11.79137 -11.56178 -11.49939 -11.27796 -11.12355 -10.98932 -10.42898 -10.38052 -10.19660 -10.02236 -9.86388 -9.48325 -9.37825 -8.94245 -8.44707 -8.06612 -7.94321 -6.40063 -3.80855 1.11165 1.79754 1.86634 2.96554 3.20135 3.21798 3.27278 3.31917 3.92142 3.95503 4.02831 4.10303 4.21536 4.28936 4.46985 4.52292 4.60109 4.75214 4.81734 4.84291 4.89015 4.94235 5.07695 5.08799 5.15808 5.25731 5.32936 5.41035 5.48804 5.60032 5.64042 5.77239 5.93405 5.97768 5.98630 6.19558 6.27370 6.37759 7.10149 7.16683 7.32916 7.44078 7.56726 7.69571 8.06519 8.07855 8.63128 9.19567 9.55928 10.07665 10.77620 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.040151 B = 0.001436 C = 0.001397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.198355 B =19490.132651 C =20037.133509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.157 3.843 3 C -0.300 4.300 4 C 0.596 3.404 5 O -0.552 6.552 6 N -0.720 5.720 7 C 0.092 3.908 8 C 0.098 3.902 9 H 0.116 0.884 10 O -0.553 6.553 11 C 0.031 3.969 12 N -0.664 5.664 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.582 6.582 16 N -0.564 5.564 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.086 3.914 26 N -0.298 5.298 27 N -0.365 5.365 28 C 0.095 3.905 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.404 0.596 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.373 0.627 36 H 0.032 0.968 37 H 0.083 0.917 38 H 0.356 0.644 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.192 0.808 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.285 -30.694 -1.913 33.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.025 3.975 3 C -0.314 4.314 4 C 0.385 3.615 5 O -0.431 6.431 6 N -0.371 5.371 7 C -0.033 4.033 8 C 0.038 3.962 9 H 0.134 0.866 10 O -0.358 6.358 11 C -0.100 4.100 12 N -0.297 5.297 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.466 6.466 16 N -0.200 5.200 17 C -0.430 4.430 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.102 4.102 26 N -0.117 5.117 27 N -0.144 5.144 28 C -0.046 4.046 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.239 0.761 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.220 0.780 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.177 0.823 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.208 0.792 44 H 0.098 0.902 45 H 0.113 0.887 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.170 -32.095 -0.875 33.995 hybrid contribution -0.646 1.836 -1.146 2.258 sum -11.816 -30.260 -2.021 32.548 Atomic orbital electron populations 1.20702 0.85974 1.04868 1.04223 1.21549 0.94960 0.86292 0.94714 1.19956 0.92905 0.93454 1.25131 1.17168 0.85320 0.83664 0.75396 1.90735 1.16558 1.84351 1.51481 1.45603 1.10040 1.05536 1.75914 1.22033 0.97320 0.80622 1.03282 1.22236 0.92464 0.92701 0.88775 0.86634 1.86654 1.42838 1.90874 1.15427 1.22533 0.93154 0.92593 1.01719 1.59967 1.18065 1.03252 1.48458 1.21685 0.96730 0.88407 1.01400 1.19800 0.90034 0.83047 0.84565 1.90533 1.27429 1.73471 1.55127 1.41850 1.09754 1.04399 1.64042 1.19665 0.88200 0.87796 1.47321 0.87958 1.25257 0.98100 0.97250 0.97283 1.69606 1.22244 1.12297 1.50226 0.85913 0.80956 0.78258 0.79065 1.19923 1.20994 1.19879 1.24078 0.97282 0.92005 0.96805 1.77222 0.95915 1.13344 1.25236 1.48388 1.04138 1.06431 1.55456 1.21981 1.01388 0.77275 1.03949 0.89442 0.91115 0.87423 0.76080 0.91086 0.90266 0.77953 0.94998 0.89898 0.82303 0.93916 0.89614 0.77472 0.91841 0.79172 0.90151 0.88744 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 9.56 36.00 0.34 -0.26 16 2 C 0.16 1.34 7.01 -81.60 -0.57 0.76 16 3 C -0.30 -2.89 6.13 -105.07 -0.64 -3.53 16 4 C 0.60 6.37 7.81 -12.52 -0.10 6.27 16 5 O -0.55 -7.32 14.84 5.27 0.08 -7.24 16 6 N -0.72 -6.26 5.49 -61.38 -0.34 -6.60 16 7 C 0.09 0.79 5.31 -4.04 -0.02 0.77 16 8 C 0.10 0.92 3.27 -26.73 -0.09 0.83 16 9 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 10 O -0.55 -5.48 12.62 -35.23 -0.44 -5.93 16 11 C 0.03 0.34 5.39 -3.83 -0.02 0.32 16 12 N -0.66 -10.45 6.12 -115.05 -0.70 -11.15 16 13 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 14 C 0.44 10.45 7.82 -10.98 -0.09 10.37 16 15 O -0.58 -15.98 15.78 5.54 0.09 -15.89 16 16 N -0.56 -14.36 5.29 -10.96 -0.06 -14.41 16 17 C -0.30 -8.43 9.68 -14.94 -0.14 -8.58 16 18 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 21 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.09 0.75 11.50 -16.98 -0.20 0.55 16 26 N -0.30 -2.92 12.50 30.86 0.39 -2.53 16 27 N -0.36 -2.86 3.98 -63.35 -0.25 -3.12 16 28 C 0.10 0.32 11.24 59.84 0.67 0.99 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.24 7.05 -51.93 -0.37 -0.13 16 31 H 0.11 0.85 6.51 -51.93 -0.34 0.51 16 32 H 0.40 2.92 7.43 -40.82 -0.30 2.62 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.37 2.63 9.05 45.56 0.41 3.04 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.36 5.98 7.82 -39.29 -0.31 5.68 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 42 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.19 1.09 7.50 -52.49 -0.39 0.70 16 44 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 45 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 0.10 7.02 -51.93 -0.36 -0.27 16 LS Contribution 394.11 15.07 5.94 5.94 Total: -1.00 -36.91 394.11 -6.30 -43.21 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -5.72 Total: 15.61 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -0.98 Total: 9.86 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.24 Total: -61.68 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.28 Total: -29.06 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.91 -6.30 -43.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732634780.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.564 kcal (2) G-P(sol) polarization free energy of solvation -36.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds