Wall clock time and date at job start Tue Mar 31 2020 22:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36614 * 120.92681 * 2 1 4 4 C 1.39263 * 119.90686 * 180.02562 * 3 2 1 5 5 N 1.31145 * 121.77261 * 359.97438 * 4 3 2 6 6 C 1.33618 * 121.39129 * 0.02562 * 5 4 3 7 7 C 1.40769 * 120.83052 * 180.02562 * 6 5 4 8 8 C 1.35699 * 120.10591 * 179.66902 * 7 6 5 9 9 C 1.40628 * 120.92604 * 0.56961 * 8 7 6 10 10 C 1.47772 * 119.80031 * 179.72710 * 9 8 7 11 11 O 1.21557 * 120.00051 * 179.72845 * 10 9 8 12 12 N 1.34773 * 119.99556 * 359.72213 * 10 9 8 13 13 C 1.46505 * 119.99794 * 180.02562 * 12 10 9 14 14 H 1.09008 * 109.46951 * 35.00279 * 13 12 10 15 15 C 1.53001 * 109.47256 * 154.99941 * 13 12 10 16 16 N 1.46493 * 109.47086 * 305.00012 * 15 13 12 17 17 C 1.36945 * 119.99892 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99422 * 359.72792 * 17 16 15 19 19 C 1.38811 * 120.00031 * 179.72716 * 17 16 15 20 20 N 1.31616 * 119.99707 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47389 * 59.99917 * 21 19 17 23 23 H 1.48501 * 109.47057 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47102 * 299.99569 * 21 19 17 25 25 C 1.52995 * 109.47326 * 275.00509 * 13 12 10 26 26 C 1.52999 * 117.50328 * 128.74279 * 25 13 12 27 27 C 1.53001 * 117.50123 * 60.08139 * 25 13 12 28 28 C 1.38551 * 120.39856 * 359.45118 * 9 8 7 29 29 C 1.40185 * 119.39857 * 0.25052 * 28 9 8 30 30 H 1.09002 * 109.47081 * 270.02808 * 1 2 3 31 31 H 1.09003 * 109.46656 * 30.01520 * 1 2 3 32 32 H 1.08995 * 109.47533 * 150.01912 * 1 2 3 33 33 H 1.08003 * 120.04451 * 359.97438 * 3 2 1 34 34 H 1.08011 * 119.11217 * 180.02562 * 4 3 2 35 35 H 1.08002 * 119.94252 * 359.97255 * 7 6 5 36 36 H 1.08004 * 119.53158 * 180.29117 * 8 7 6 37 37 H 0.96995 * 120.00881 * 0.02562 * 12 10 9 38 38 H 1.08998 * 109.47065 * 184.99789 * 15 13 12 39 39 H 1.09001 * 109.46892 * 65.00053 * 15 13 12 40 40 H 0.97000 * 120.00738 * 359.73142 * 16 15 13 41 41 H 0.97004 * 119.99151 * 179.97438 * 20 19 17 42 42 H 1.09003 * 115.54789 * 274.41858 * 25 13 12 43 43 H 1.08993 * 117.49777 * 0.02562 * 26 25 13 44 44 H 1.09003 * 117.49495 * 145.01900 * 26 25 13 45 45 H 1.09004 * 117.50191 * 214.98494 * 27 25 13 46 46 H 1.09003 * 117.49677 * 359.97438 * 27 25 13 47 47 H 1.08002 * 120.29601 * 180.23132 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1719 0.0000 4 6 3.6016 1.1471 -0.0005 5 7 4.2722 0.0201 -0.0006 6 6 3.6478 -1.1613 -0.0006 7 6 4.3794 -2.3639 0.0000 8 6 3.7303 -3.5555 0.0067 9 6 2.3252 -3.6131 0.0013 10 6 1.6439 -4.9245 0.0028 11 8 0.4295 -4.9785 0.0031 12 7 2.3691 -6.0605 0.0036 13 6 1.6937 -7.3606 0.0045 14 1 0.7792 -7.2953 -0.5851 15 6 2.6188 -8.4163 -0.6043 16 7 3.0465 -7.9811 -1.9361 17 6 3.8849 -8.7700 -2.6777 18 1 4.2343 -9.7109 -2.2789 19 6 4.2857 -8.3604 -3.9420 20 7 3.8602 -7.2135 -4.4278 21 14 5.4288 -9.4369 -4.9539 22 1 4.7871 -10.7550 -5.1905 23 1 5.7043 -8.7790 -6.2564 24 1 6.7044 -9.6321 -4.2190 25 6 1.3468 -7.7541 1.4417 26 6 -0.0963 -8.1720 1.7311 27 6 0.4235 -6.8202 2.2267 28 6 1.5757 -2.4478 0.0003 29 6 2.2307 -1.2084 -0.0005 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6851 2.1163 -0.0004 34 1 4.1438 2.0813 -0.0001 35 1 5.4591 -2.3381 -0.0001 36 1 4.3008 -4.4726 0.0118 37 1 3.3381 -6.0174 0.0037 38 1 2.0854 -9.3634 -0.6853 39 1 3.4929 -8.5450 0.0340 40 1 2.7330 -7.1359 -2.2942 41 1 4.1406 -6.9272 -5.3112 42 1 2.1380 -8.2608 1.9944 43 1 -0.7984 -8.1670 0.8976 44 1 -0.2544 -8.9535 2.4744 45 1 0.6070 -6.7128 3.2958 46 1 0.0635 -5.9251 1.7193 47 1 0.4967 -2.4940 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733173776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:43 Heat of formation + Delta-G solvation = 54.148140 kcal Electronic energy + Delta-G solvation = -28764.280643 eV Core-core repulsion = 24912.860911 eV Total energy + Delta-G solvation = -3851.419732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.12808 -39.83144 -37.54832 -36.50151 -35.06010 -34.85710 -33.46923 -31.42169 -30.58896 -30.46075 -28.32913 -27.80268 -24.78561 -23.94267 -23.68063 -22.17250 -21.56628 -21.34804 -20.97498 -20.09806 -18.40605 -17.88537 -17.11155 -16.80598 -16.01712 -15.92492 -15.29956 -15.00180 -14.77591 -14.46989 -14.37644 -14.20101 -13.88892 -13.66967 -13.63965 -13.28999 -13.15783 -13.01151 -12.88867 -12.68685 -12.15223 -11.88275 -11.75689 -11.65950 -11.53611 -11.19993 -11.03351 -10.91334 -10.80887 -10.36005 -10.22584 -10.14439 -9.96132 -9.73305 -9.66918 -9.61502 -8.95803 -8.92815 -8.67137 -8.31042 -6.98596 -5.79383 -3.09774 0.11031 0.55801 1.77635 2.39766 3.29874 3.38809 3.42250 3.46929 3.48005 4.00214 4.09059 4.13963 4.30892 4.40695 4.54209 4.58465 4.77058 4.87519 4.90663 4.99329 5.06802 5.15240 5.16657 5.25840 5.26970 5.29014 5.43473 5.49159 5.53412 5.70615 5.75276 5.81341 5.83670 5.84865 5.88899 5.92657 6.07125 6.17390 6.20747 6.23448 6.34704 6.36592 6.45986 6.50953 6.64080 6.65128 6.90330 7.66190 7.74041 7.80196 8.37976 8.44852 9.49926 10.04977 10.40406 11.42616 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009344 B = 0.003359 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.887280 B = 8332.586803 C =10497.405959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.012 4.012 3 C -0.190 4.190 4 C 0.140 3.860 5 N -0.482 5.482 6 C 0.147 3.853 7 C -0.099 4.099 8 C -0.067 4.067 9 C -0.124 4.124 10 C 0.562 3.438 11 O -0.543 6.543 12 N -0.699 5.699 13 C 0.168 3.832 14 H 0.089 0.911 15 C 0.148 3.852 16 N -0.732 5.732 17 C -0.245 4.245 18 H 0.070 0.930 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.163 4.163 26 C -0.170 4.170 27 C -0.185 4.185 28 C -0.031 4.031 29 C -0.113 4.113 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.404 0.596 38 H 0.036 0.964 39 H 0.025 0.975 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.117 0.883 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 14.662 14.104 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.020 4.020 3 C -0.209 4.209 4 C -0.032 4.032 5 N -0.190 5.190 6 C 0.025 3.975 7 C -0.117 4.117 8 C -0.088 4.088 9 C -0.127 4.127 10 C 0.349 3.651 11 O -0.423 6.423 12 N -0.349 5.349 13 C 0.064 3.936 14 H 0.107 0.893 15 C 0.020 3.980 16 N -0.377 5.377 17 C -0.376 4.376 18 H 0.088 0.912 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.183 4.183 26 C -0.208 4.208 27 C -0.222 4.222 28 C -0.051 4.051 29 C -0.115 4.115 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.155 0.845 34 H 0.176 0.824 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.240 0.760 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.101 0.899 46 H 0.135 0.865 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.998 14.342 14.022 20.671 hybrid contribution 0.265 -0.317 -0.806 0.906 sum -4.733 14.025 13.216 19.844 Atomic orbital electron populations 1.20943 0.89800 1.04020 1.03361 1.20244 0.96765 0.92028 0.92953 1.21731 0.95623 0.98709 1.04880 1.22966 0.91513 0.96462 0.92276 1.68063 1.39931 0.97728 1.13294 1.18989 0.89565 0.92531 0.96397 1.20680 1.00668 0.89706 1.00659 1.21051 0.93167 0.98694 0.95838 1.20011 0.93787 0.93818 1.05098 1.18071 0.86934 0.83909 0.76174 1.90670 1.13398 1.87466 1.50743 1.45880 1.10611 1.05218 1.73153 1.20844 0.97313 0.82192 0.93251 0.89255 1.20924 0.94713 0.94348 0.88050 1.42346 1.57277 1.24400 1.13655 1.19156 1.20439 1.01076 0.96921 0.91172 1.24746 1.00921 0.97372 0.97603 1.69659 1.48546 1.21285 1.18281 0.86273 0.80671 0.79619 0.79611 1.21262 1.21696 1.21240 1.22647 0.93857 1.04691 0.97093 1.22894 0.96276 0.98238 1.03386 1.23266 1.03857 0.95766 0.99332 1.21431 1.00656 0.89682 0.93338 1.18661 0.94103 0.93960 1.04798 0.89955 0.90510 0.90244 0.84524 0.82389 0.84093 0.84511 0.75982 0.94606 0.95691 0.77997 0.93407 0.87839 0.88723 0.89211 0.89903 0.86508 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.59 36.01 0.35 -0.60 16 2 C -0.01 -0.12 5.92 -104.22 -0.62 -0.74 16 3 C -0.19 -1.66 9.72 -39.79 -0.39 -2.04 16 4 C 0.14 1.37 11.14 -17.46 -0.19 1.18 16 5 N -0.48 -6.27 10.33 -10.92 -0.11 -6.38 16 6 C 0.15 2.02 6.61 -84.78 -0.56 1.46 16 7 C -0.10 -1.30 9.95 -39.53 -0.39 -1.69 16 8 C -0.07 -0.90 9.44 -39.59 -0.37 -1.27 16 9 C -0.12 -1.81 5.87 -104.98 -0.62 -2.43 16 10 C 0.56 9.20 7.10 -12.36 -0.09 9.11 16 11 O -0.54 -9.92 13.33 5.32 0.07 -9.85 16 12 N -0.70 -11.15 4.45 -54.77 -0.24 -11.39 16 13 C 0.17 2.81 2.43 -67.93 -0.17 2.64 16 14 H 0.09 1.69 7.34 -51.92 -0.38 1.31 16 15 C 0.15 2.83 5.80 -4.04 -0.02 2.81 16 16 N -0.73 -17.86 5.43 -59.91 -0.33 -18.18 16 17 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 21 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 C -0.16 -2.29 5.36 -90.62 -0.49 -2.77 16 26 C -0.17 -2.21 10.18 -26.69 -0.27 -2.48 16 27 C -0.19 -2.52 9.74 -26.69 -0.26 -2.78 16 28 C -0.03 -0.42 8.88 -38.74 -0.34 -0.77 16 29 C -0.11 -1.46 5.74 -106.82 -0.61 -2.07 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 32 H 0.08 0.65 6.51 -51.93 -0.34 0.31 16 33 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 34 H 0.16 1.01 8.06 -52.48 -0.42 0.58 16 35 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.14 1.66 6.35 -52.48 -0.33 1.32 16 37 H 0.40 6.11 6.59 -40.82 -0.27 5.84 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.39 10.10 7.34 -40.82 -0.30 9.80 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.10 1.35 8.11 -51.93 -0.42 0.92 16 43 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.12 1.83 5.02 -51.93 -0.26 1.57 16 47 H 0.15 1.83 6.00 -52.49 -0.31 1.51 16 LS Contribution 386.85 15.07 5.83 5.83 Total: -1.00 -32.76 386.85 -10.76 -43.51 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -6.38 Total: 16.07 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -5.29 Total: -9.65 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: 0.04 Total: -63.02 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.07 Total: -9.85 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.76 -10.76 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733173776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.663 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds