Wall clock time and date at job start Tue Mar 31 2020 22:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36614 * 120.92681 * 2 1 4 4 C 1.39263 * 119.90686 * 180.02562 * 3 2 1 5 5 N 1.31145 * 121.77261 * 359.97438 * 4 3 2 6 6 C 1.33618 * 121.39129 * 0.02562 * 5 4 3 7 7 C 1.40769 * 120.83052 * 180.02562 * 6 5 4 8 8 C 1.35699 * 120.10591 * 179.66902 * 7 6 5 9 9 C 1.40628 * 120.92604 * 0.56961 * 8 7 6 10 10 C 1.47772 * 119.80031 * 179.72710 * 9 8 7 11 11 O 1.21557 * 120.00051 * 179.72845 * 10 9 8 12 12 N 1.34773 * 119.99556 * 359.72213 * 10 9 8 13 13 C 1.46505 * 119.99794 * 180.02562 * 12 10 9 14 14 H 1.09008 * 109.46951 * 35.00279 * 13 12 10 15 15 C 1.53001 * 109.47256 * 154.99941 * 13 12 10 16 16 N 1.46493 * 109.47086 * 305.00012 * 15 13 12 17 17 C 1.36945 * 119.99892 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99422 * 359.72792 * 17 16 15 19 19 C 1.38811 * 120.00031 * 179.72716 * 17 16 15 20 20 N 1.31616 * 119.99707 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47389 * 59.99917 * 21 19 17 23 23 H 1.48501 * 109.47057 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47102 * 299.99569 * 21 19 17 25 25 C 1.52995 * 109.47326 * 275.00509 * 13 12 10 26 26 C 1.52999 * 117.50328 * 128.74279 * 25 13 12 27 27 C 1.53001 * 117.50123 * 60.08139 * 25 13 12 28 28 C 1.38551 * 120.39856 * 359.45118 * 9 8 7 29 29 C 1.40185 * 119.39857 * 0.25052 * 28 9 8 30 30 H 1.09002 * 109.47081 * 270.02808 * 1 2 3 31 31 H 1.09003 * 109.46656 * 30.01520 * 1 2 3 32 32 H 1.08995 * 109.47533 * 150.01912 * 1 2 3 33 33 H 1.08003 * 120.04451 * 359.97438 * 3 2 1 34 34 H 1.08011 * 119.11217 * 180.02562 * 4 3 2 35 35 H 1.08002 * 119.94252 * 359.97255 * 7 6 5 36 36 H 1.08004 * 119.53158 * 180.29117 * 8 7 6 37 37 H 0.96995 * 120.00881 * 0.02562 * 12 10 9 38 38 H 1.08998 * 109.47065 * 184.99789 * 15 13 12 39 39 H 1.09001 * 109.46892 * 65.00053 * 15 13 12 40 40 H 0.97000 * 120.00738 * 359.73142 * 16 15 13 41 41 H 0.97004 * 119.99151 * 179.97438 * 20 19 17 42 42 H 1.09003 * 115.54789 * 274.41858 * 25 13 12 43 43 H 1.08993 * 117.49777 * 0.02562 * 26 25 13 44 44 H 1.09003 * 117.49495 * 145.01900 * 26 25 13 45 45 H 1.09004 * 117.50191 * 214.98494 * 27 25 13 46 46 H 1.09003 * 117.49677 * 359.97438 * 27 25 13 47 47 H 1.08002 * 120.29601 * 180.23132 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1719 0.0000 4 6 3.6016 1.1471 -0.0005 5 7 4.2722 0.0201 -0.0006 6 6 3.6478 -1.1613 -0.0006 7 6 4.3794 -2.3639 0.0000 8 6 3.7303 -3.5555 0.0067 9 6 2.3252 -3.6131 0.0013 10 6 1.6439 -4.9245 0.0028 11 8 0.4295 -4.9785 0.0031 12 7 2.3691 -6.0605 0.0036 13 6 1.6937 -7.3606 0.0045 14 1 0.7792 -7.2953 -0.5851 15 6 2.6188 -8.4163 -0.6043 16 7 3.0465 -7.9811 -1.9361 17 6 3.8849 -8.7700 -2.6777 18 1 4.2343 -9.7109 -2.2789 19 6 4.2857 -8.3604 -3.9420 20 7 3.8602 -7.2135 -4.4278 21 14 5.4288 -9.4369 -4.9539 22 1 4.7871 -10.7550 -5.1905 23 1 5.7043 -8.7790 -6.2564 24 1 6.7044 -9.6321 -4.2190 25 6 1.3468 -7.7541 1.4417 26 6 -0.0963 -8.1720 1.7311 27 6 0.4235 -6.8202 2.2267 28 6 1.5757 -2.4478 0.0003 29 6 2.2307 -1.2084 -0.0005 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6851 2.1163 -0.0004 34 1 4.1438 2.0813 -0.0001 35 1 5.4591 -2.3381 -0.0001 36 1 4.3008 -4.4726 0.0118 37 1 3.3381 -6.0174 0.0037 38 1 2.0854 -9.3634 -0.6853 39 1 3.4929 -8.5450 0.0340 40 1 2.7330 -7.1359 -2.2942 41 1 4.1406 -6.9272 -5.3112 42 1 2.1380 -8.2608 1.9944 43 1 -0.7984 -8.1670 0.8976 44 1 -0.2544 -8.9535 2.4744 45 1 0.6070 -6.7128 3.2958 46 1 0.0635 -5.9251 1.7193 47 1 0.4967 -2.4940 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733173776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:41 Heat of formation + Delta-G solvation = 34.495375 kcal Electronic energy + Delta-G solvation = -28765.132851 eV Core-core repulsion = 24912.860911 eV Total energy + Delta-G solvation = -3852.271940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.07560 -41.04370 -38.70123 -37.59456 -36.62444 -35.70902 -35.03336 -33.11830 -31.77291 -31.41997 -29.69157 -28.74982 -26.17044 -25.43305 -24.64042 -23.32751 -23.06155 -22.40507 -21.97810 -21.36256 -19.63556 -19.08691 -18.74503 -17.83936 -17.14164 -16.93019 -16.66135 -16.60339 -15.89865 -15.64889 -15.37533 -15.31027 -15.16970 -15.06586 -14.86445 -14.55877 -14.44216 -13.97171 -13.83375 -13.69726 -13.45044 -13.18688 -12.78207 -12.76435 -12.72395 -12.68956 -12.51483 -12.37585 -12.23585 -12.11622 -11.85097 -11.30607 -11.20360 -11.12800 -10.98143 -10.85573 -10.51664 -10.05120 -9.82366 -9.27590 -9.01975 -7.93965 -5.24013 -0.82706 -0.36589 0.83628 1.38394 1.48343 1.50815 1.56939 2.05981 2.28462 2.55985 2.99586 3.05321 3.26336 3.40200 3.46736 3.57004 3.60778 3.67768 3.79952 3.94996 3.97147 4.02105 4.12011 4.17136 4.24098 4.34732 4.45225 4.45576 4.50731 4.63301 4.71545 4.74330 4.82504 4.85203 4.89394 4.90114 5.01061 5.05061 5.10986 5.13662 5.17576 5.28949 5.32454 5.36573 5.48364 5.50530 5.56034 5.75620 6.25819 6.51673 6.88627 7.16545 7.33577 8.06262 8.30348 9.28625 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009344 B = 0.003359 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.887280 B = 8332.586803 C =10497.405959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.021 4.021 3 C -0.179 4.179 4 C 0.143 3.857 5 N -0.513 5.513 6 C 0.129 3.871 7 C -0.107 4.107 8 C -0.073 4.073 9 C -0.147 4.147 10 C 0.561 3.439 11 O -0.568 6.568 12 N -0.697 5.697 13 C 0.179 3.821 14 H 0.061 0.939 15 C 0.150 3.850 16 N -0.743 5.743 17 C -0.245 4.245 18 H 0.080 0.920 19 C -0.072 4.072 20 N -0.968 5.968 21 Si 0.973 3.027 22 H -0.280 1.280 23 H -0.299 1.299 24 H -0.275 1.275 25 C -0.166 4.166 26 C -0.162 4.162 27 C -0.183 4.183 28 C -0.028 4.028 29 C -0.131 4.131 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.178 0.822 34 H 0.195 0.805 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.407 0.593 38 H 0.039 0.961 39 H 0.042 0.958 40 H 0.374 0.626 41 H 0.249 0.751 42 H 0.122 0.878 43 H 0.082 0.918 44 H 0.116 0.884 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.096 15.706 15.451 22.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.028 4.028 5 N -0.223 5.223 6 C 0.008 3.992 7 C -0.126 4.126 8 C -0.093 4.093 9 C -0.150 4.150 10 C 0.349 3.651 11 O -0.450 6.450 12 N -0.347 5.347 13 C 0.074 3.926 14 H 0.079 0.921 15 C 0.023 3.977 16 N -0.386 5.386 17 C -0.377 4.377 18 H 0.098 0.902 19 C -0.264 4.264 20 N -0.618 5.618 21 Si 0.802 3.198 22 H -0.206 1.206 23 H -0.226 1.226 24 H -0.201 1.201 25 C -0.186 4.186 26 C -0.199 4.199 27 C -0.220 4.220 28 C -0.048 4.048 29 C -0.133 4.133 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.195 0.805 34 H 0.212 0.788 35 H 0.168 0.832 36 H 0.160 0.840 37 H 0.244 0.756 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.206 0.794 41 H 0.058 0.942 42 H 0.140 0.860 43 H 0.101 0.899 44 H 0.134 0.866 45 H 0.121 0.879 46 H 0.112 0.888 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.894 15.354 15.414 22.301 hybrid contribution 0.179 -0.481 -1.171 1.278 sum -4.716 14.873 14.244 21.127 Atomic orbital electron populations 1.21011 0.87946 1.04646 1.04345 1.20625 0.98203 0.91545 0.92492 1.22179 0.95286 0.99767 1.02574 1.23718 0.92564 0.96783 0.89752 1.68107 1.40773 0.98252 1.15132 1.19195 0.90113 0.93118 0.96737 1.20844 1.01210 0.89769 1.00735 1.21071 0.92757 0.99169 0.96283 1.19943 0.94373 0.93180 1.07509 1.18344 0.86699 0.84535 0.75491 1.90646 1.14412 1.87879 1.52060 1.45841 1.10732 1.05033 1.73082 1.20611 0.95431 0.81929 0.94634 0.92061 1.21052 0.95615 0.95040 0.86002 1.42517 1.57013 1.23730 1.15364 1.19589 1.19721 1.01271 0.97084 0.90244 1.25541 1.03091 0.98752 0.99032 1.69831 1.50436 1.23214 1.18311 0.85231 0.79097 0.77906 0.77607 1.20586 1.22559 1.20092 1.22563 0.95069 1.05579 0.95355 1.22981 0.94980 0.98531 1.03424 1.23206 1.03563 0.95154 1.00076 1.21545 1.00790 0.89888 0.92535 1.18871 0.94198 0.94740 1.05540 0.88680 0.88077 0.91416 0.80463 0.78792 0.83198 0.83968 0.75592 0.94340 0.94039 0.79433 0.94178 0.86032 0.89907 0.86560 0.87877 0.88794 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 9.59 71.24 0.68 -0.94 16 2 C -0.02 -0.39 5.92 -19.60 -0.12 -0.51 16 3 C -0.18 -2.56 9.72 22.14 0.22 -2.34 16 4 C 0.14 2.44 11.14 85.04 0.95 3.39 16 5 N -0.51 -12.93 10.33 -188.46 -1.95 -14.88 16 6 C 0.13 3.59 6.61 40.37 0.27 3.86 16 7 C -0.11 -2.94 9.95 22.30 0.22 -2.72 16 8 C -0.07 -2.05 9.44 22.26 0.21 -1.84 16 9 C -0.15 -4.54 5.87 -20.10 -0.12 -4.65 16 10 C 0.56 19.34 7.10 86.77 0.62 19.96 16 11 O -0.57 -21.90 13.33 -3.90 -0.05 -21.95 16 12 N -0.70 -23.09 4.45 -445.47 -1.98 -25.07 16 13 C 0.18 6.06 2.43 44.99 0.11 6.17 16 14 H 0.06 2.43 7.34 -2.38 -0.02 2.41 16 15 C 0.15 5.72 5.80 86.38 0.50 6.22 16 16 N -0.74 -36.82 5.43 -343.46 -1.87 -38.69 16 17 C -0.25 -13.36 9.99 84.03 0.84 -12.52 16 18 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 19 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 20 N -0.97 -59.24 13.06 21.65 0.28 -58.96 16 21 Si 0.97 45.78 29.55 68.60 2.03 47.81 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 C -0.17 -4.51 5.36 -10.80 -0.06 -4.57 16 26 C -0.16 -4.00 10.18 30.62 0.31 -3.69 16 27 C -0.18 -4.84 9.74 30.62 0.30 -4.54 16 28 C -0.03 -0.79 8.88 22.82 0.20 -0.58 16 29 C -0.13 -3.40 5.74 -21.29 -0.12 -3.52 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 31 H 0.10 0.84 8.10 -2.39 -0.02 0.82 16 32 H 0.07 1.07 6.51 -2.39 -0.02 1.05 16 33 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.20 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 36 H 0.14 3.67 6.35 -2.91 -0.02 3.65 16 37 H 0.41 12.79 6.59 -92.71 -0.61 12.18 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.37 20.23 7.34 -92.71 -0.68 19.55 16 41 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 42 H 0.12 2.89 8.11 -2.39 -0.02 2.87 16 43 H 0.08 2.25 8.05 -2.39 -0.02 2.23 16 44 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.09 3.01 5.02 -2.39 -0.01 2.99 16 47 H 0.15 3.93 6.00 -2.91 -0.02 3.91 16 Total: -1.00 -72.36 386.85 1.67 -70.69 By element: Atomic # 1 Polarization: 47.76 SS G_CDS: -0.27 Total: 47.49 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 5.48 Total: -6.44 kcal Atomic # 7 Polarization: -132.09 SS G_CDS: -5.51 Total: -137.60 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -72.36 1.67 -70.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733173776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.187 kcal (2) G-P(sol) polarization free energy of solvation -72.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds