Wall clock time and date at job start Tue Mar 31 2020 22:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36612 * 120.91914 * 2 1 4 4 C 1.39275 * 119.90538 * 180.02562 * 3 2 1 5 5 N 1.31142 * 121.77044 * 0.02562 * 4 3 2 6 6 C 1.33614 * 121.39732 * 0.02562 * 5 4 3 7 7 C 1.40762 * 120.84330 * 179.97438 * 6 5 4 8 8 C 1.35694 * 120.11411 * 180.02562 * 7 6 5 9 9 C 1.40640 * 120.92665 * 359.97438 * 8 7 6 10 10 C 1.47765 * 119.79907 * 180.02562 * 9 8 7 11 11 O 1.21571 * 119.99659 * 180.02562 * 10 9 8 12 12 N 1.34775 * 120.00463 * 0.02562 * 10 9 8 13 13 C 1.46504 * 120.00198 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.46568 * 324.99907 * 13 12 10 15 15 C 1.52998 * 109.46913 * 205.00274 * 13 12 10 16 16 N 1.46493 * 109.47476 * 54.99758 * 15 13 12 17 17 C 1.36943 * 120.00041 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99686 * 0.02562 * 17 16 15 19 19 C 1.38808 * 119.99639 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00509 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99596 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47409 * 89.99714 * 21 19 17 23 23 H 1.48500 * 109.47340 * 209.99950 * 21 19 17 24 24 H 1.48505 * 109.47135 * 329.99875 * 21 19 17 25 25 C 1.52999 * 109.46997 * 84.99866 * 13 12 10 26 26 C 1.52996 * 117.49897 * 8.74786 * 25 13 12 27 27 C 1.52994 * 117.49992 * 300.08805 * 25 13 12 28 28 C 1.38542 * 120.39421 * 0.02562 * 9 8 7 29 29 C 1.40189 * 119.40260 * 359.97438 * 28 9 8 30 30 H 1.08993 * 109.47568 * 89.99815 * 1 2 3 31 31 H 1.09007 * 109.46793 * 209.99491 * 1 2 3 32 32 H 1.08996 * 109.47398 * 329.99022 * 1 2 3 33 33 H 1.07998 * 120.04956 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.11403 * 179.71723 * 4 3 2 35 35 H 1.08006 * 119.94387 * 0.03965 * 7 6 5 36 36 H 1.08005 * 119.53536 * 179.97438 * 8 7 6 37 37 H 0.97000 * 119.99910 * 0.02562 * 12 10 9 38 38 H 1.09005 * 109.46639 * 174.99987 * 15 13 12 39 39 H 1.08999 * 109.46819 * 294.99368 * 15 13 12 40 40 H 0.97002 * 119.99849 * 0.02562 * 16 15 13 41 41 H 0.96999 * 120.00163 * 179.97438 * 20 19 17 42 42 H 1.09004 * 115.54922 * 154.41812 * 25 13 12 43 43 H 1.09002 * 117.49982 * 0.02562 * 26 25 13 44 44 H 1.09004 * 117.49615 * 145.01570 * 26 25 13 45 45 H 1.09006 * 117.50020 * 214.98213 * 27 25 13 46 46 H 1.09005 * 117.50033 * 359.97438 * 27 25 13 47 47 H 1.07997 * 120.29944 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1720 0.0000 4 6 3.6014 1.1473 -0.0005 5 7 4.2721 0.0204 -0.0016 6 6 3.6480 -1.1610 -0.0026 7 6 4.3795 -2.3637 -0.0043 8 6 3.7305 -3.5553 -0.0059 9 6 2.3252 -3.6130 -0.0054 10 6 1.6441 -4.9243 -0.0066 11 8 0.4296 -4.9784 -0.0067 12 7 2.3692 -6.0604 -0.0076 13 6 1.6939 -7.3605 -0.0094 14 1 0.7792 -7.2954 0.5798 15 6 2.6187 -8.4164 0.5995 16 7 3.0458 -7.9818 1.9317 17 6 3.8831 -8.7714 2.6738 18 1 4.2289 -9.7144 2.2767 19 6 4.2874 -8.3598 3.9363 20 7 3.8664 -7.2104 4.4200 21 14 5.4301 -9.4366 4.9482 22 1 6.8402 -9.0777 4.6518 23 1 5.1589 -9.2256 6.3929 24 1 5.1997 -10.8629 4.6045 25 6 1.3478 -7.7534 -1.4470 26 6 1.9190 -6.8889 -2.5726 27 6 0.4281 -6.8172 -2.2333 28 6 1.5759 -2.4478 -0.0038 29 6 2.2308 -1.2083 -0.0021 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8898 0.5140 33 1 1.6848 2.1163 0.0004 34 1 4.1435 2.0815 -0.0052 35 1 5.4593 -2.3379 -0.0040 36 1 4.3010 -4.4723 -0.0075 37 1 3.3383 -6.0173 -0.0072 38 1 2.0853 -9.3636 0.6799 39 1 3.4931 -8.5448 -0.0385 40 1 2.7349 -7.1350 2.2884 41 1 4.1486 -6.9230 5.3024 42 1 1.2541 -8.8235 -1.6323 43 1 2.5417 -6.0404 -2.2890 44 1 2.2008 -7.3902 -3.4986 45 1 -0.2705 -7.2712 -2.9362 46 1 0.0692 -5.9214 -1.7263 47 1 0.4969 -2.4939 -0.0030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733173778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:49 Heat of formation + Delta-G solvation = 58.389123 kcal Electronic energy + Delta-G solvation = -28956.184260 eV Core-core repulsion = 25104.948431 eV Total energy + Delta-G solvation = -3851.235829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.15467 -39.99811 -37.55135 -36.49316 -34.95346 -34.85767 -33.37212 -31.47146 -30.58830 -30.47436 -28.38113 -27.87117 -24.78727 -24.00188 -23.70667 -22.25195 -21.58163 -21.40853 -21.01684 -19.75678 -18.41933 -17.89105 -17.18232 -16.77645 -16.04925 -15.90479 -15.72670 -14.87394 -14.76758 -14.45902 -14.30344 -14.20688 -13.85711 -13.67581 -13.54202 -13.29327 -13.24523 -13.02019 -12.89613 -12.69910 -12.13403 -11.89489 -11.72585 -11.64523 -11.56037 -11.33363 -11.19532 -10.90484 -10.83707 -10.37016 -10.25085 -10.11564 -9.82017 -9.72068 -9.65844 -9.57849 -8.96874 -8.93446 -8.69650 -8.32610 -6.98511 -5.79633 -3.09935 0.09782 0.54487 1.76474 2.37988 3.30519 3.39120 3.41693 3.46992 3.48793 3.99432 4.05112 4.09993 4.29836 4.39806 4.54105 4.57350 4.72982 4.87744 4.92017 4.97738 5.05537 5.14515 5.17789 5.19691 5.25685 5.27911 5.47800 5.52311 5.54194 5.68746 5.73349 5.80457 5.82726 5.84590 5.91057 5.99132 6.00676 6.16396 6.19935 6.22725 6.30746 6.35042 6.45629 6.50916 6.62869 6.66337 6.89003 7.66596 7.73118 7.76703 8.37640 8.41833 9.49794 10.04925 10.40288 11.42434 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009840 B = 0.003360 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.908386 B = 8331.611753 C =10215.202393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.012 4.012 3 C -0.189 4.189 4 C 0.140 3.860 5 N -0.482 5.482 6 C 0.147 3.853 7 C -0.098 4.098 8 C -0.068 4.068 9 C -0.126 4.126 10 C 0.560 3.440 11 O -0.539 6.539 12 N -0.701 5.701 13 C 0.168 3.832 14 H 0.093 0.907 15 C 0.147 3.853 16 N -0.732 5.732 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.160 4.160 26 C -0.178 4.178 27 C -0.187 4.187 28 C -0.030 4.030 29 C -0.113 4.113 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.405 0.595 38 H 0.035 0.965 39 H 0.027 0.973 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.116 0.884 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 14.948 -14.238 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.020 4.020 3 C -0.209 4.209 4 C -0.032 4.032 5 N -0.190 5.190 6 C 0.026 3.974 7 C -0.117 4.117 8 C -0.088 4.088 9 C -0.129 4.129 10 C 0.347 3.653 11 O -0.419 6.419 12 N -0.351 5.351 13 C 0.064 3.936 14 H 0.111 0.889 15 C 0.019 3.981 16 N -0.377 5.377 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.180 4.180 26 C -0.215 4.215 27 C -0.224 4.224 28 C -0.050 4.050 29 C -0.115 4.115 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.176 0.824 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.241 0.759 38 H 0.053 0.947 39 H 0.044 0.956 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.134 0.866 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.590 14.616 -14.163 20.863 hybrid contribution 0.252 -0.309 0.824 0.916 sum -4.337 14.307 -13.339 20.036 Atomic orbital electron populations 1.20942 0.89790 1.04030 1.03372 1.20242 0.96773 0.92024 0.92932 1.21736 0.95624 0.98717 1.04852 1.22970 0.91512 0.96463 0.92229 1.68060 1.39934 0.97726 1.13300 1.18987 0.89557 0.92533 0.96360 1.20677 1.00678 0.89699 1.00612 1.21048 0.93147 0.98700 0.95921 1.20005 0.93788 0.93803 1.05263 1.18101 0.86970 0.83933 0.76249 1.90686 1.13338 1.87450 1.50413 1.45907 1.10663 1.05307 1.73230 1.20795 0.97166 0.82097 0.93590 0.88925 1.20919 0.94922 0.94224 0.87998 1.42353 1.57434 1.24269 1.13630 1.19197 1.20397 1.00884 0.96991 0.91122 1.24744 1.00931 0.97363 0.97648 1.69664 1.48581 1.21163 1.18364 0.86200 0.80618 0.79713 0.79682 1.21700 1.21788 1.20762 1.22692 1.05199 0.97506 0.92570 1.22891 0.97031 1.02761 0.98823 1.23334 0.92592 1.03333 1.03110 1.21431 1.00663 0.89685 0.93238 1.18664 0.94106 0.93957 1.04803 0.89943 0.90246 0.90496 0.84508 0.82375 0.84082 0.84537 0.75871 0.94718 0.95554 0.78000 0.93464 0.87190 0.89056 0.89482 0.89740 0.86591 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.59 36.00 0.35 -0.60 16 2 C -0.01 -0.12 5.92 -104.22 -0.62 -0.74 16 3 C -0.19 -1.65 9.72 -39.78 -0.39 -2.03 16 4 C 0.14 1.37 11.14 -17.46 -0.19 1.18 16 5 N -0.48 -6.24 10.33 -10.92 -0.11 -6.35 16 6 C 0.15 2.01 6.61 -84.78 -0.56 1.45 16 7 C -0.10 -1.29 9.95 -39.54 -0.39 -1.68 16 8 C -0.07 -0.90 9.44 -39.59 -0.37 -1.28 16 9 C -0.13 -1.82 5.87 -104.98 -0.62 -2.43 16 10 C 0.56 9.07 6.60 -12.37 -0.08 8.99 16 11 O -0.54 -9.82 13.34 5.30 0.07 -9.75 16 12 N -0.70 -11.00 3.00 -54.77 -0.16 -11.17 16 13 C 0.17 2.78 2.59 -67.93 -0.18 2.60 16 14 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 15 C 0.15 2.81 5.80 -4.05 -0.02 2.78 16 16 N -0.73 -17.78 5.43 -59.91 -0.33 -18.11 16 17 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 21 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.16 -2.23 5.71 -90.63 -0.52 -2.75 16 26 C -0.18 -2.26 9.74 -26.70 -0.26 -2.52 16 27 C -0.19 -2.55 9.82 -26.70 -0.26 -2.81 16 28 C -0.03 -0.41 8.88 -38.74 -0.34 -0.75 16 29 C -0.11 -1.45 5.74 -106.82 -0.61 -2.07 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.65 6.52 -51.92 -0.34 0.31 16 32 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 33 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.14 1.64 8.06 -52.48 -0.42 1.21 16 36 H 0.14 1.64 6.35 -52.48 -0.33 1.31 16 37 H 0.40 6.07 6.59 -40.82 -0.27 5.80 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.39 10.05 7.33 -40.82 -0.30 9.75 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.11 1.41 8.11 -51.93 -0.42 0.99 16 43 H 0.09 1.19 6.67 -51.93 -0.35 0.84 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.12 1.82 5.01 -51.93 -0.26 1.56 16 47 H 0.15 1.82 6.00 -52.49 -0.31 1.51 16 LS Contribution 383.93 15.07 5.79 5.79 Total: -1.00 -32.71 383.93 -10.69 -43.40 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -6.32 Total: 15.94 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -5.32 Total: -9.81 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: 0.12 Total: -62.67 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.71 -10.69 -43.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733173778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.792 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds