Wall clock time and date at job start Tue Mar 31 2020 22:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36612 * 120.91914 * 2 1 4 4 C 1.39275 * 119.90538 * 180.02562 * 3 2 1 5 5 N 1.31142 * 121.77044 * 0.02562 * 4 3 2 6 6 C 1.33614 * 121.39732 * 0.02562 * 5 4 3 7 7 C 1.40762 * 120.84330 * 179.97438 * 6 5 4 8 8 C 1.35694 * 120.11411 * 180.02562 * 7 6 5 9 9 C 1.40640 * 120.92665 * 359.97438 * 8 7 6 10 10 C 1.47765 * 119.79907 * 180.02562 * 9 8 7 11 11 O 1.21571 * 119.99659 * 180.02562 * 10 9 8 12 12 N 1.34775 * 120.00463 * 0.02562 * 10 9 8 13 13 C 1.46504 * 120.00198 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.46568 * 324.99907 * 13 12 10 15 15 C 1.52998 * 109.46913 * 205.00274 * 13 12 10 16 16 N 1.46493 * 109.47476 * 54.99758 * 15 13 12 17 17 C 1.36943 * 120.00041 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99686 * 0.02562 * 17 16 15 19 19 C 1.38808 * 119.99639 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00509 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99596 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47409 * 89.99714 * 21 19 17 23 23 H 1.48500 * 109.47340 * 209.99950 * 21 19 17 24 24 H 1.48505 * 109.47135 * 329.99875 * 21 19 17 25 25 C 1.52999 * 109.46997 * 84.99866 * 13 12 10 26 26 C 1.52996 * 117.49897 * 8.74786 * 25 13 12 27 27 C 1.52994 * 117.49992 * 300.08805 * 25 13 12 28 28 C 1.38542 * 120.39421 * 0.02562 * 9 8 7 29 29 C 1.40189 * 119.40260 * 359.97438 * 28 9 8 30 30 H 1.08993 * 109.47568 * 89.99815 * 1 2 3 31 31 H 1.09007 * 109.46793 * 209.99491 * 1 2 3 32 32 H 1.08996 * 109.47398 * 329.99022 * 1 2 3 33 33 H 1.07998 * 120.04956 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.11403 * 179.71723 * 4 3 2 35 35 H 1.08006 * 119.94387 * 0.03965 * 7 6 5 36 36 H 1.08005 * 119.53536 * 179.97438 * 8 7 6 37 37 H 0.97000 * 119.99910 * 0.02562 * 12 10 9 38 38 H 1.09005 * 109.46639 * 174.99987 * 15 13 12 39 39 H 1.08999 * 109.46819 * 294.99368 * 15 13 12 40 40 H 0.97002 * 119.99849 * 0.02562 * 16 15 13 41 41 H 0.96999 * 120.00163 * 179.97438 * 20 19 17 42 42 H 1.09004 * 115.54922 * 154.41812 * 25 13 12 43 43 H 1.09002 * 117.49982 * 0.02562 * 26 25 13 44 44 H 1.09004 * 117.49615 * 145.01570 * 26 25 13 45 45 H 1.09006 * 117.50020 * 214.98213 * 27 25 13 46 46 H 1.09005 * 117.50033 * 359.97438 * 27 25 13 47 47 H 1.07997 * 120.29944 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1720 0.0000 4 6 3.6014 1.1473 -0.0005 5 7 4.2721 0.0204 -0.0016 6 6 3.6480 -1.1610 -0.0026 7 6 4.3795 -2.3637 -0.0043 8 6 3.7305 -3.5553 -0.0059 9 6 2.3252 -3.6130 -0.0054 10 6 1.6441 -4.9243 -0.0066 11 8 0.4296 -4.9784 -0.0067 12 7 2.3692 -6.0604 -0.0076 13 6 1.6939 -7.3605 -0.0094 14 1 0.7792 -7.2954 0.5798 15 6 2.6187 -8.4164 0.5995 16 7 3.0458 -7.9818 1.9317 17 6 3.8831 -8.7714 2.6738 18 1 4.2289 -9.7144 2.2767 19 6 4.2874 -8.3598 3.9363 20 7 3.8664 -7.2104 4.4200 21 14 5.4301 -9.4366 4.9482 22 1 6.8402 -9.0777 4.6518 23 1 5.1589 -9.2256 6.3929 24 1 5.1997 -10.8629 4.6045 25 6 1.3478 -7.7534 -1.4470 26 6 1.9190 -6.8889 -2.5726 27 6 0.4281 -6.8172 -2.2333 28 6 1.5759 -2.4478 -0.0038 29 6 2.2308 -1.2083 -0.0021 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8898 0.5140 33 1 1.6848 2.1163 0.0004 34 1 4.1435 2.0815 -0.0052 35 1 5.4593 -2.3379 -0.0040 36 1 4.3010 -4.4723 -0.0075 37 1 3.3383 -6.0173 -0.0072 38 1 2.0853 -9.3636 0.6799 39 1 3.4931 -8.5448 -0.0385 40 1 2.7349 -7.1350 2.2884 41 1 4.1486 -6.9230 5.3024 42 1 1.2541 -8.8235 -1.6323 43 1 2.5417 -6.0404 -2.2890 44 1 2.2008 -7.3902 -3.4986 45 1 -0.2705 -7.2712 -2.9362 46 1 0.0692 -5.9214 -1.7263 47 1 0.4969 -2.4939 -0.0030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733173778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:48 Heat of formation + Delta-G solvation = 39.328308 kcal Electronic energy + Delta-G solvation = -28957.010799 eV Core-core repulsion = 25104.948431 eV Total energy + Delta-G solvation = -3852.062368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.11031 -41.18323 -38.68886 -37.59545 -36.55153 -35.70923 -34.86846 -33.16261 -31.76020 -31.42760 -29.79195 -28.76329 -26.16783 -25.48742 -24.64911 -23.47350 -23.00124 -22.49558 -21.99232 -20.99594 -19.62793 -19.12941 -18.74625 -17.76125 -17.26805 -17.06286 -16.86322 -16.54192 -15.79337 -15.58977 -15.38941 -15.24534 -15.10579 -15.05722 -14.96140 -14.56848 -14.43129 -13.97526 -13.82462 -13.63724 -13.45974 -13.13736 -12.86767 -12.75159 -12.74452 -12.72014 -12.63408 -12.39402 -12.27461 -12.09248 -11.83821 -11.32619 -11.20960 -11.01396 -10.95115 -10.79546 -10.52063 -10.05936 -9.83578 -9.28414 -9.01339 -7.93908 -5.23712 -0.83460 -0.37324 0.83015 1.37177 1.48493 1.49525 1.57964 2.08171 2.28341 2.55837 2.94955 3.03900 3.25111 3.40570 3.46039 3.55862 3.61622 3.69146 3.79466 3.95942 3.97895 4.01304 4.08865 4.18474 4.23523 4.42251 4.44832 4.49595 4.50389 4.62152 4.71247 4.73944 4.83049 4.84563 4.88375 4.89499 5.00311 5.06085 5.13185 5.13941 5.16695 5.25761 5.31934 5.39559 5.47600 5.51012 5.55605 5.75022 6.26141 6.49133 6.88216 7.14578 7.33914 8.06869 8.30748 9.28901 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009840 B = 0.003360 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.908386 B = 8331.611753 C =10215.202393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.021 4.021 3 C -0.179 4.179 4 C 0.143 3.857 5 N -0.513 5.513 6 C 0.130 3.870 7 C -0.107 4.107 8 C -0.073 4.073 9 C -0.148 4.148 10 C 0.560 3.440 11 O -0.566 6.566 12 N -0.697 5.697 13 C 0.178 3.822 14 H 0.065 0.935 15 C 0.150 3.850 16 N -0.743 5.743 17 C -0.243 4.243 18 H 0.080 0.920 19 C -0.072 4.072 20 N -0.968 5.968 21 Si 0.972 3.028 22 H -0.286 1.286 23 H -0.300 1.300 24 H -0.269 1.269 25 C -0.165 4.165 26 C -0.164 4.164 27 C -0.189 4.189 28 C -0.028 4.028 29 C -0.131 4.131 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.178 0.822 34 H 0.195 0.805 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.408 0.592 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.374 0.626 41 H 0.249 0.751 42 H 0.127 0.873 43 H 0.085 0.915 44 H 0.110 0.890 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 16.034 -15.609 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.028 4.028 5 N -0.223 5.223 6 C 0.009 3.991 7 C -0.125 4.125 8 C -0.093 4.093 9 C -0.151 4.151 10 C 0.349 3.651 11 O -0.447 6.447 12 N -0.348 5.348 13 C 0.073 3.927 14 H 0.083 0.917 15 C 0.023 3.977 16 N -0.386 5.386 17 C -0.374 4.374 18 H 0.098 0.902 19 C -0.265 4.265 20 N -0.618 5.618 21 Si 0.801 3.199 22 H -0.213 1.213 23 H -0.227 1.227 24 H -0.194 1.194 25 C -0.184 4.184 26 C -0.201 4.201 27 C -0.225 4.225 28 C -0.047 4.047 29 C -0.133 4.133 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.195 0.805 34 H 0.212 0.788 35 H 0.168 0.832 36 H 0.160 0.840 37 H 0.245 0.755 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.206 0.794 41 H 0.058 0.942 42 H 0.145 0.855 43 H 0.103 0.897 44 H 0.129 0.871 45 H 0.122 0.878 46 H 0.111 0.889 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.408 15.670 -15.580 22.533 hybrid contribution 0.145 -0.484 1.192 1.294 sum -4.263 15.185 -14.389 21.349 Atomic orbital electron populations 1.21009 0.87953 1.04650 1.04343 1.20622 0.98202 0.91553 0.92487 1.22183 0.95289 0.99768 1.02549 1.23721 0.92558 0.96786 0.89722 1.68103 1.40777 0.98252 1.15129 1.19192 0.90097 0.93118 0.96706 1.20839 1.01211 0.89764 1.00685 1.21063 0.92732 0.99156 0.96354 1.19936 0.94360 0.93165 1.07620 1.18360 0.86704 0.84545 0.75534 1.90662 1.14397 1.87863 1.51788 1.45846 1.10731 1.05071 1.73132 1.20554 0.95306 0.81859 0.94985 0.91729 1.21045 0.95762 0.95008 0.85880 1.42526 1.57155 1.23597 1.15353 1.19618 1.19620 1.01062 0.97120 0.90240 1.25531 1.03104 0.98746 0.99092 1.69832 1.50495 1.23083 1.18420 0.85167 0.78663 0.78638 0.77421 1.21300 1.22697 1.19405 1.22616 1.06265 0.98547 0.91012 1.22959 0.96152 1.02068 0.98943 1.23286 0.93604 1.02408 1.03230 1.21545 1.00788 0.89910 0.92479 1.18871 0.94203 0.94729 1.05537 0.88684 0.91423 0.88070 0.80460 0.78787 0.83201 0.84011 0.75518 0.94230 0.94098 0.79420 0.94202 0.85495 0.89670 0.87147 0.87809 0.88884 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 9.59 71.23 0.68 -0.94 16 2 C -0.02 -0.39 5.92 -19.61 -0.12 -0.50 16 3 C -0.18 -2.54 9.72 22.14 0.22 -2.33 16 4 C 0.14 2.43 11.14 85.05 0.95 3.38 16 5 N -0.51 -12.86 10.33 -188.46 -1.95 -14.81 16 6 C 0.13 3.59 6.61 40.37 0.27 3.85 16 7 C -0.11 -2.90 9.95 22.30 0.22 -2.68 16 8 C -0.07 -2.04 9.44 22.27 0.21 -1.83 16 9 C -0.15 -4.51 5.87 -20.10 -0.12 -4.63 16 10 C 0.56 19.09 6.60 86.76 0.57 19.66 16 11 O -0.57 -21.72 13.34 -3.94 -0.05 -21.77 16 12 N -0.70 -22.72 3.00 -445.47 -1.34 -24.06 16 13 C 0.18 5.98 2.59 44.99 0.12 6.10 16 14 H 0.06 2.54 7.58 -2.39 -0.02 2.52 16 15 C 0.15 5.67 5.80 86.38 0.50 6.18 16 16 N -0.74 -36.63 5.43 -343.47 -1.87 -38.50 16 17 C -0.24 -13.18 9.99 84.03 0.84 -12.34 16 18 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 19 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 20 N -0.97 -59.18 13.06 21.65 0.28 -58.90 16 21 Si 0.97 45.78 29.55 68.60 2.03 47.81 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 C -0.16 -4.45 5.71 -10.80 -0.06 -4.51 16 26 C -0.16 -3.94 9.74 30.62 0.30 -3.65 16 27 C -0.19 -5.00 9.82 30.62 0.30 -4.70 16 28 C -0.03 -0.77 8.88 22.82 0.20 -0.57 16 29 C -0.13 -3.38 5.74 -21.29 -0.12 -3.50 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.06 6.52 -2.38 -0.02 1.05 16 32 H 0.10 0.84 8.10 -2.39 -0.02 0.82 16 33 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.14 3.63 6.35 -2.91 -0.02 3.61 16 37 H 0.41 12.68 6.59 -92.71 -0.61 12.07 16 38 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.37 20.13 7.33 -92.71 -0.68 19.45 16 41 H 0.25 14.91 8.31 -92.71 -0.77 14.13 16 42 H 0.13 3.00 8.11 -2.39 -0.02 2.98 16 43 H 0.08 2.17 6.67 -2.39 -0.02 2.16 16 44 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 45 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 46 H 0.09 2.98 5.01 -2.38 -0.01 2.97 16 47 H 0.15 3.91 6.00 -2.91 -0.02 3.89 16 Total: -1.00 -72.15 383.93 2.26 -69.89 By element: Atomic # 1 Polarization: 47.26 SS G_CDS: -0.27 Total: 46.99 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 5.43 Total: -6.65 kcal Atomic # 7 Polarization: -131.40 SS G_CDS: -4.87 Total: -136.27 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.77 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -72.15 2.26 -69.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733173778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.219 kcal (2) G-P(sol) polarization free energy of solvation -72.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds