Wall clock time and date at job start Tue Mar 31 2020 22:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36351 * 119.96278 * 2 1 4 4 C 1.38864 * 121.06399 * 180.02562 * 3 2 1 5 5 C 1.38745 * 120.72181 * 359.97438 * 4 3 2 6 6 C 1.47436 * 120.33159 * 179.70888 * 5 4 3 7 7 O 1.21606 * 120.00283 * 179.97438 * 6 5 4 8 8 N 1.34773 * 120.00117 * 359.97438 * 6 5 4 9 9 C 1.46504 * 120.00141 * 180.02562 * 8 6 5 10 10 H 1.08993 * 109.46936 * 324.99968 * 9 8 6 11 11 C 1.53002 * 109.47172 * 205.00177 * 9 8 6 12 12 N 1.46497 * 109.47023 * 54.99727 * 11 9 8 13 13 C 1.36941 * 119.99636 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00316 * 0.02562 * 13 12 11 15 15 C 1.38820 * 119.99649 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00011 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99700 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47328 * 89.99898 * 17 15 13 19 19 H 1.48503 * 109.46918 * 209.99824 * 17 15 13 20 20 H 1.48503 * 109.47060 * 329.99625 * 17 15 13 21 21 C 1.53001 * 109.47172 * 85.00253 * 9 8 6 22 22 C 1.52998 * 117.49558 * 8.74228 * 21 9 8 23 23 C 1.52995 * 117.49508 * 300.08720 * 21 9 8 24 24 C 1.41782 * 119.33746 * 359.97438 * 5 4 3 25 25 N 1.33349 * 121.04655 * 179.97438 * 24 5 4 26 26 C 1.31234 * 121.34598 * 180.02562 * 25 24 5 27 27 C 1.39227 * 121.69665 * 0.02562 * 26 25 24 28 28 C 1.36627 * 119.91168 * 359.97438 * 27 26 25 29 29 C 1.40448 * 119.95765 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47152 * 89.99839 * 1 2 3 31 31 H 1.08992 * 109.47560 * 210.00509 * 1 2 3 32 32 H 1.09003 * 109.46813 * 330.00348 * 1 2 3 33 33 H 1.08005 * 119.46786 * 359.97438 * 3 2 1 34 34 H 1.08006 * 119.64147 * 179.97438 * 4 3 2 35 35 H 0.97004 * 120.00063 * 0.02562 * 8 6 5 36 36 H 1.08999 * 109.47413 * 175.00257 * 11 9 8 37 37 H 1.09003 * 109.47095 * 295.00156 * 11 9 8 38 38 H 0.96997 * 120.00186 * 0.02562 * 12 11 9 39 39 H 0.97000 * 119.99907 * 180.02562 * 16 15 13 40 40 H 1.08995 * 115.55171 * 154.41979 * 21 9 8 41 41 H 1.08997 * 117.50518 * 0.02562 * 22 21 9 42 42 H 1.09010 * 117.49698 * 145.02204 * 22 21 9 43 43 H 1.09003 * 117.49839 * 214.97828 * 23 21 9 44 44 H 1.08999 * 117.50391 * 0.02562 * 23 21 9 45 45 H 1.07997 * 119.15089 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.04466 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.92828 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1879 1.1813 0.0000 4 6 3.5763 1.2080 -0.0005 5 6 4.3079 0.0291 -0.0005 6 6 5.7817 0.0674 -0.0076 7 8 6.4170 -0.9695 -0.0071 8 7 6.4250 1.2517 -0.0146 9 6 7.8895 1.2898 -0.0221 10 1 8.2776 0.4597 0.5679 11 6 8.3684 2.6119 0.5810 12 7 7.7866 2.7792 1.9150 13 6 8.0753 3.8963 2.6527 14 1 8.7316 4.6540 2.2509 15 6 7.5244 4.0546 3.9170 16 7 6.7241 3.1314 4.4064 17 14 7.9177 5.5786 4.9230 18 1 6.9200 6.6380 4.6273 19 1 7.8698 5.2433 6.3689 20 1 9.2760 6.0661 4.5726 21 6 8.3953 1.1730 -1.4614 22 6 7.3579 1.2512 -2.5832 23 6 8.0180 -0.0872 -2.2425 24 6 3.6240 -1.2129 0.0005 25 7 4.2931 -2.3664 0.0001 26 6 3.6661 -3.5193 0.0006 27 6 2.2759 -3.5959 0.0011 28 6 1.5304 -2.4510 0.0016 29 6 2.2083 -1.2168 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8898 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.6386 2.1112 -0.0004 34 1 4.0923 2.1568 -0.0009 35 1 5.9183 2.0789 -0.0146 36 1 9.4557 2.6038 0.6572 37 1 8.0551 3.4375 -0.0582 38 1 7.1974 2.0985 2.2760 39 1 6.3389 3.2422 5.2897 40 1 9.3763 1.6082 -1.6517 41 1 6.3152 1.3863 -2.2960 42 1 7.6566 1.7377 -3.5119 43 1 8.7506 -0.4808 -2.9472 44 1 7.4090 -0.8328 -1.7314 45 1 4.2433 -4.4320 -0.0003 46 1 1.7875 -4.5592 0.0011 47 1 0.4512 -2.4913 0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733177173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:06 Heat of formation + Delta-G solvation = 68.696419 kcal Electronic energy + Delta-G solvation = -29385.856819 eV Core-core repulsion = 25535.067948 eV Total energy + Delta-G solvation = -3850.788871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.11091 -39.61836 -37.37737 -36.85557 -34.83086 -34.12164 -33.16886 -31.47633 -30.88678 -30.58393 -28.43887 -27.14680 -24.38529 -24.07692 -23.59928 -22.41620 -22.14550 -21.40741 -20.16113 -19.53163 -18.26470 -17.71550 -17.16164 -17.00895 -15.85157 -15.74604 -15.52649 -14.80755 -14.69622 -14.51338 -14.15325 -14.03686 -13.90120 -13.54057 -13.38732 -13.21491 -13.19195 -12.95378 -12.78340 -12.39051 -12.01800 -11.98847 -11.54105 -11.46952 -11.39716 -11.23298 -11.09540 -10.85956 -10.81324 -10.44502 -10.17569 -10.04184 -9.77086 -9.70274 -9.48868 -9.03319 -8.88688 -8.88226 -8.50124 -8.18478 -6.93731 -5.75922 -3.05775 0.09825 0.75398 1.70715 2.69558 3.42381 3.43740 3.48557 3.50360 3.51299 4.15002 4.17179 4.24940 4.39854 4.56008 4.58202 4.65516 4.69743 4.89981 4.94178 5.02816 5.10892 5.24175 5.28023 5.29494 5.31045 5.35664 5.51656 5.56348 5.62241 5.70222 5.82633 5.84208 5.87759 5.92239 5.96052 6.09756 6.10023 6.12589 6.26895 6.31068 6.39057 6.41518 6.55443 6.65597 6.71807 6.76109 7.05105 7.69814 7.93127 8.04664 8.41646 8.71390 9.53476 10.10070 10.45675 11.46218 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010004 B = 0.003650 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.266369 B = 7669.994188 C = 9244.752424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.045 4.045 3 C -0.125 4.125 4 C -0.053 4.053 5 C -0.109 4.109 6 C 0.556 3.444 7 O -0.502 6.502 8 N -0.709 5.709 9 C 0.171 3.829 10 H 0.091 0.909 11 C 0.148 3.852 12 N -0.732 5.732 13 C -0.242 4.242 14 H 0.071 0.929 15 C -0.011 4.011 16 N -0.930 5.930 17 Si 0.906 3.094 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.160 4.160 22 C -0.178 4.178 23 C -0.186 4.186 24 C 0.167 3.833 25 N -0.433 5.433 26 C 0.127 3.873 27 C -0.178 4.178 28 C -0.062 4.062 29 C -0.109 4.109 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.400 0.600 36 H 0.034 0.966 37 H 0.026 0.974 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.119 0.881 45 H 0.158 0.842 46 H 0.135 0.865 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.299 -9.565 -14.201 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.046 4.046 3 C -0.143 4.143 4 C -0.074 4.074 5 C -0.113 4.113 6 C 0.342 3.658 7 O -0.377 6.377 8 N -0.361 5.361 9 C 0.066 3.934 10 H 0.109 0.891 11 C 0.020 3.980 12 N -0.377 5.377 13 C -0.373 4.373 14 H 0.088 0.912 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.179 4.179 22 C -0.215 4.215 23 C -0.223 4.223 24 C 0.044 3.956 25 N -0.139 5.139 26 C -0.045 4.045 27 C -0.198 4.198 28 C -0.088 4.088 29 C -0.111 4.111 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.236 0.764 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.137 0.863 45 H 0.175 0.825 46 H 0.153 0.847 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.793 -10.018 -14.128 20.953 hybrid contribution -1.133 1.089 0.825 1.775 sum -12.925 -8.929 -13.303 20.585 Atomic orbital electron populations 1.20902 0.90537 1.03467 1.02766 1.19847 0.96187 0.91984 0.96558 1.20725 0.93896 0.98040 1.01610 1.21519 0.94269 0.97695 0.93881 1.19944 0.93980 0.91842 1.05486 1.17829 0.86467 0.84154 0.77354 1.90756 1.67143 1.32311 1.47531 1.45912 1.07449 1.08083 1.74699 1.20718 0.78942 1.00336 0.93398 0.89064 1.20912 0.96653 0.92506 0.87933 1.42363 1.57315 1.24427 1.13546 1.19215 1.23638 0.97498 0.96943 0.91151 1.24742 1.00076 0.98329 0.97623 1.69676 1.35703 1.34327 1.18124 0.86205 0.77813 0.82567 0.79673 1.21769 1.21820 1.20766 1.22694 0.99515 1.02965 0.92757 1.22865 0.98387 1.01549 0.98716 1.23349 1.03834 0.92057 1.03059 1.18585 0.88798 0.91972 0.96287 1.68341 1.38723 0.97158 1.09685 1.23163 0.91832 0.96466 0.93068 1.21927 0.95731 0.99431 1.02750 1.21455 1.00315 0.91308 0.95672 1.18659 0.93814 0.94303 1.04370 0.90525 0.91103 0.90670 0.84813 0.84425 0.76389 0.94845 0.95662 0.77951 0.93529 0.87378 0.89146 0.89672 0.89910 0.86324 0.82472 0.84671 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.53 36.00 0.34 -0.50 16 2 C -0.04 -0.48 5.89 -104.47 -0.62 -1.10 16 3 C -0.12 -1.40 9.57 -40.03 -0.38 -1.79 16 4 C -0.05 -0.71 9.52 -39.16 -0.37 -1.09 16 5 C -0.11 -1.77 5.91 -104.61 -0.62 -2.39 16 6 C 0.56 10.11 6.60 -12.52 -0.08 10.03 16 7 O -0.50 -10.40 12.22 5.27 0.06 -10.34 16 8 N -0.71 -12.04 3.00 -54.88 -0.16 -12.21 16 9 C 0.17 3.02 2.59 -67.93 -0.18 2.85 16 10 H 0.09 1.85 7.58 -51.93 -0.39 1.45 16 11 C 0.15 2.94 5.80 -4.04 -0.02 2.92 16 12 N -0.73 -18.29 5.43 -59.91 -0.33 -18.62 16 13 C -0.24 -6.68 9.99 -15.05 -0.15 -6.83 16 14 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 17 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C -0.16 -2.40 5.71 -90.62 -0.52 -2.92 16 22 C -0.18 -2.46 9.74 -26.70 -0.26 -2.72 16 23 C -0.19 -2.81 9.82 -26.70 -0.26 -3.07 16 24 C 0.17 2.68 6.61 -84.58 -0.56 2.12 16 25 N -0.43 -7.17 8.44 -10.76 -0.09 -7.26 16 26 C 0.13 1.57 11.15 -17.44 -0.19 1.37 16 27 C -0.18 -1.70 10.03 -39.80 -0.40 -2.10 16 28 C -0.06 -0.61 9.36 -39.19 -0.37 -0.98 16 29 C -0.11 -1.40 5.74 -106.82 -0.61 -2.01 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.43 6.42 -51.93 -0.33 0.09 16 32 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 33 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.14 1.68 6.37 -52.48 -0.33 1.34 16 35 H 0.40 6.40 6.63 -40.82 -0.27 6.12 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.39 10.40 7.33 -40.82 -0.30 10.10 16 39 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.11 1.49 8.11 -51.93 -0.42 1.07 16 41 H 0.09 1.29 6.67 -51.93 -0.35 0.94 16 42 H 0.08 1.04 8.14 -51.92 -0.42 0.61 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.12 2.11 5.01 -51.93 -0.26 1.85 16 45 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 46 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 47 H 0.14 0.92 6.42 -52.49 -0.34 0.58 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -34.58 381.70 -10.75 -45.34 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -6.34 Total: 16.13 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -5.35 Total: -8.65 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: 0.14 Total: -65.51 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.06 Total: -10.34 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.58 -10.75 -45.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733177173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.034 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds