Wall clock time and date at job start Tue Mar 31 2020 22:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36351 * 119.96278 * 2 1 4 4 C 1.38864 * 121.06399 * 180.02562 * 3 2 1 5 5 C 1.38745 * 120.72181 * 359.97438 * 4 3 2 6 6 C 1.47436 * 120.33159 * 179.70888 * 5 4 3 7 7 O 1.21606 * 120.00283 * 179.97438 * 6 5 4 8 8 N 1.34773 * 120.00117 * 359.97438 * 6 5 4 9 9 C 1.46504 * 120.00141 * 180.02562 * 8 6 5 10 10 H 1.08993 * 109.46936 * 324.99968 * 9 8 6 11 11 C 1.53002 * 109.47172 * 205.00177 * 9 8 6 12 12 N 1.46497 * 109.47023 * 54.99727 * 11 9 8 13 13 C 1.36941 * 119.99636 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00316 * 0.02562 * 13 12 11 15 15 C 1.38820 * 119.99649 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00011 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99700 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47328 * 89.99898 * 17 15 13 19 19 H 1.48503 * 109.46918 * 209.99824 * 17 15 13 20 20 H 1.48503 * 109.47060 * 329.99625 * 17 15 13 21 21 C 1.53001 * 109.47172 * 85.00253 * 9 8 6 22 22 C 1.52998 * 117.49558 * 8.74228 * 21 9 8 23 23 C 1.52995 * 117.49508 * 300.08720 * 21 9 8 24 24 C 1.41782 * 119.33746 * 359.97438 * 5 4 3 25 25 N 1.33349 * 121.04655 * 179.97438 * 24 5 4 26 26 C 1.31234 * 121.34598 * 180.02562 * 25 24 5 27 27 C 1.39227 * 121.69665 * 0.02562 * 26 25 24 28 28 C 1.36627 * 119.91168 * 359.97438 * 27 26 25 29 29 C 1.40448 * 119.95765 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47152 * 89.99839 * 1 2 3 31 31 H 1.08992 * 109.47560 * 210.00509 * 1 2 3 32 32 H 1.09003 * 109.46813 * 330.00348 * 1 2 3 33 33 H 1.08005 * 119.46786 * 359.97438 * 3 2 1 34 34 H 1.08006 * 119.64147 * 179.97438 * 4 3 2 35 35 H 0.97004 * 120.00063 * 0.02562 * 8 6 5 36 36 H 1.08999 * 109.47413 * 175.00257 * 11 9 8 37 37 H 1.09003 * 109.47095 * 295.00156 * 11 9 8 38 38 H 0.96997 * 120.00186 * 0.02562 * 12 11 9 39 39 H 0.97000 * 119.99907 * 180.02562 * 16 15 13 40 40 H 1.08995 * 115.55171 * 154.41979 * 21 9 8 41 41 H 1.08997 * 117.50518 * 0.02562 * 22 21 9 42 42 H 1.09010 * 117.49698 * 145.02204 * 22 21 9 43 43 H 1.09003 * 117.49839 * 214.97828 * 23 21 9 44 44 H 1.08999 * 117.50391 * 0.02562 * 23 21 9 45 45 H 1.07997 * 119.15089 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.04466 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.92828 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1879 1.1813 0.0000 4 6 3.5763 1.2080 -0.0005 5 6 4.3079 0.0291 -0.0005 6 6 5.7817 0.0674 -0.0076 7 8 6.4170 -0.9695 -0.0071 8 7 6.4250 1.2517 -0.0146 9 6 7.8895 1.2898 -0.0221 10 1 8.2776 0.4597 0.5679 11 6 8.3684 2.6119 0.5810 12 7 7.7866 2.7792 1.9150 13 6 8.0753 3.8963 2.6527 14 1 8.7316 4.6540 2.2509 15 6 7.5244 4.0546 3.9170 16 7 6.7241 3.1314 4.4064 17 14 7.9177 5.5786 4.9230 18 1 6.9200 6.6380 4.6273 19 1 7.8698 5.2433 6.3689 20 1 9.2760 6.0661 4.5726 21 6 8.3953 1.1730 -1.4614 22 6 7.3579 1.2512 -2.5832 23 6 8.0180 -0.0872 -2.2425 24 6 3.6240 -1.2129 0.0005 25 7 4.2931 -2.3664 0.0001 26 6 3.6661 -3.5193 0.0006 27 6 2.2759 -3.5959 0.0011 28 6 1.5304 -2.4510 0.0016 29 6 2.2083 -1.2168 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8898 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.6386 2.1112 -0.0004 34 1 4.0923 2.1568 -0.0009 35 1 5.9183 2.0789 -0.0146 36 1 9.4557 2.6038 0.6572 37 1 8.0551 3.4375 -0.0582 38 1 7.1974 2.0985 2.2760 39 1 6.3389 3.2422 5.2897 40 1 9.3763 1.6082 -1.6517 41 1 6.3152 1.3863 -2.2960 42 1 7.6566 1.7377 -3.5119 43 1 8.7506 -0.4808 -2.9472 44 1 7.4090 -0.8328 -1.7314 45 1 4.2433 -4.4320 -0.0003 46 1 1.7875 -4.5592 0.0011 47 1 0.4512 -2.4913 0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733177173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:05 Heat of formation + Delta-G solvation = 47.413442 kcal Electronic energy + Delta-G solvation = -29386.779718 eV Core-core repulsion = 25535.067948 eV Total energy + Delta-G solvation = -3851.711770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.10099 -40.89927 -38.40602 -38.08130 -36.55584 -35.14617 -34.68040 -33.08566 -32.02215 -31.53874 -29.95853 -28.16466 -25.96220 -25.26717 -24.56606 -23.61819 -23.41591 -22.93268 -21.30519 -20.83819 -19.36466 -19.15445 -18.58563 -18.02532 -17.22405 -17.02636 -16.81017 -16.40505 -15.77787 -15.54200 -15.41961 -15.22329 -15.03087 -14.91760 -14.85084 -14.37207 -14.26547 -14.04345 -13.94061 -13.58553 -13.13338 -13.10616 -12.84415 -12.77986 -12.70656 -12.65856 -12.43525 -12.22146 -12.17576 -12.09087 -11.83493 -11.34014 -11.29669 -11.00230 -10.94167 -10.80012 -10.10489 -9.90475 -9.81197 -9.13839 -9.01941 -7.93642 -5.24122 -0.83730 -0.16626 0.76818 1.47882 1.49807 1.58256 1.73999 2.16431 2.29314 2.55889 2.94197 3.15498 3.34454 3.40314 3.51079 3.64147 3.70866 3.84303 3.91516 3.95622 3.99590 4.08122 4.09716 4.17253 4.37333 4.40862 4.44766 4.49480 4.56942 4.63459 4.76743 4.80715 4.83189 4.86531 4.90594 4.98855 5.04352 5.09445 5.15317 5.17691 5.19498 5.25309 5.40430 5.43060 5.50341 5.57240 5.63408 5.85471 6.25882 6.61492 7.08493 7.33159 7.36545 8.06064 8.30806 9.29418 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010004 B = 0.003650 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.266369 B = 7669.994188 C = 9244.752424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.027 4.027 3 C -0.141 4.141 4 C -0.047 4.047 5 C -0.157 4.157 6 C 0.552 3.448 7 O -0.539 6.539 8 N -0.704 5.704 9 C 0.180 3.820 10 H 0.056 0.944 11 C 0.152 3.848 12 N -0.743 5.743 13 C -0.244 4.244 14 H 0.080 0.920 15 C -0.073 4.073 16 N -0.969 5.969 17 Si 0.975 3.025 18 H -0.283 1.283 19 H -0.300 1.300 20 H -0.270 1.270 21 C -0.162 4.162 22 C -0.160 4.160 23 C -0.192 4.192 24 C 0.139 3.861 25 N -0.493 5.493 26 C 0.118 3.882 27 C -0.173 4.173 28 C -0.053 4.053 29 C -0.130 4.130 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.164 0.836 34 H 0.141 0.859 35 H 0.404 0.596 36 H 0.038 0.962 37 H 0.042 0.958 38 H 0.373 0.627 39 H 0.249 0.751 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.174 0.826 46 H 0.178 0.822 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.725 -8.830 -15.533 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.029 4.029 3 C -0.159 4.159 4 C -0.067 4.067 5 C -0.160 4.160 6 C 0.341 3.659 7 O -0.417 6.417 8 N -0.357 5.357 9 C 0.075 3.925 10 H 0.075 0.925 11 C 0.025 3.975 12 N -0.386 5.386 13 C -0.376 4.376 14 H 0.098 0.902 15 C -0.265 4.265 16 N -0.620 5.620 17 Si 0.804 3.196 18 H -0.210 1.210 19 H -0.227 1.227 20 H -0.194 1.194 21 C -0.182 4.182 22 C -0.197 4.197 23 C -0.229 4.229 24 C 0.016 3.984 25 N -0.201 5.201 26 C -0.054 4.054 27 C -0.193 4.193 28 C -0.078 4.078 29 C -0.132 4.132 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.182 0.818 34 H 0.159 0.841 35 H 0.241 0.759 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.205 0.795 39 H 0.058 0.942 40 H 0.146 0.854 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.121 0.879 44 H 0.106 0.894 45 H 0.191 0.809 46 H 0.196 0.804 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.202 -9.256 -15.506 22.974 hybrid contribution -0.442 0.742 1.190 1.471 sum -14.644 -8.513 -14.316 22.178 Atomic orbital electron populations 1.21045 0.87110 1.04957 1.04441 1.20375 0.98430 0.90934 0.93115 1.21068 0.92899 0.99778 1.02135 1.21693 0.95606 0.96827 0.92612 1.19928 0.92775 0.93512 1.09830 1.18251 0.87631 0.83673 0.76379 1.90715 1.68166 1.33417 1.49416 1.45829 1.07070 1.08128 1.74634 1.20470 0.79511 0.97782 0.94757 0.92549 1.21023 0.96532 0.94003 0.85922 1.42541 1.57335 1.23511 1.15240 1.19650 1.22730 0.98002 0.97172 0.90170 1.25569 1.00567 1.01392 0.98998 1.69857 1.37416 1.36517 1.18222 0.85126 0.78143 0.79067 0.77303 1.21021 1.22695 1.19438 1.22620 1.00766 1.03588 0.91198 1.22925 0.97630 1.00207 0.98951 1.23253 1.04308 0.91886 1.03408 1.18854 0.90562 0.91675 0.97295 1.68262 1.40827 0.98553 1.12483 1.23687 0.93862 0.95953 0.91877 1.22309 0.94343 1.01410 1.01211 1.21968 1.02261 0.90002 0.93598 1.19005 0.92705 0.96555 1.04969 0.88440 0.89488 0.89371 0.81845 0.84150 0.75943 0.94395 0.93971 0.79549 0.94183 0.85421 0.89917 0.86922 0.87929 0.89396 0.80889 0.80444 0.80168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.53 71.23 0.68 -0.50 16 2 C -0.03 -0.54 5.89 -19.77 -0.12 -0.66 16 3 C -0.14 -3.04 9.57 21.98 0.21 -2.83 16 4 C -0.05 -1.32 9.52 22.54 0.21 -1.10 16 5 C -0.16 -5.51 5.91 -19.86 -0.12 -5.63 16 6 C 0.55 21.98 6.60 86.67 0.57 22.55 16 7 O -0.54 -24.67 12.22 -4.05 -0.05 -24.72 16 8 N -0.70 -25.62 3.00 -445.79 -1.34 -26.96 16 9 C 0.18 6.70 2.59 44.99 0.12 6.81 16 10 H 0.06 2.49 7.58 -2.39 -0.02 2.47 16 11 C 0.15 6.12 5.80 86.38 0.50 6.62 16 12 N -0.74 -38.18 5.43 -343.45 -1.87 -40.04 16 13 C -0.24 -13.56 9.99 84.03 0.84 -12.72 16 14 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 15 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 16 N -0.97 -60.31 13.06 21.65 0.28 -60.03 16 17 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 C -0.16 -4.91 5.71 -10.80 -0.06 -4.97 16 22 C -0.16 -4.34 9.74 30.62 0.30 -4.05 16 23 C -0.19 -5.91 9.82 30.61 0.30 -5.61 16 24 C 0.14 4.70 6.61 40.61 0.27 4.97 16 25 N -0.49 -17.54 8.44 -187.97 -1.59 -19.13 16 26 C 0.12 2.96 11.15 85.02 0.95 3.91 16 27 C -0.17 -2.93 10.03 22.13 0.22 -2.71 16 28 C -0.05 -0.90 9.36 22.52 0.21 -0.69 16 29 C -0.13 -3.22 5.74 -21.29 -0.12 -3.34 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 0.62 6.42 -2.39 -0.02 0.60 16 32 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 33 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.14 3.62 6.37 -2.91 -0.02 3.61 16 35 H 0.40 13.72 6.63 -92.71 -0.61 13.11 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.37 21.06 7.33 -92.71 -0.68 20.38 16 39 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.13 3.36 8.11 -2.39 -0.02 3.35 16 41 H 0.08 2.39 6.67 -2.39 -0.02 2.37 16 42 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 43 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.09 3.37 5.01 -2.39 -0.01 3.36 16 45 H 0.17 3.40 8.06 -2.91 -0.02 3.37 16 46 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 47 H 0.18 1.46 6.42 -2.91 -0.02 1.44 16 Total: -1.00 -80.55 381.70 2.63 -77.92 By element: Atomic # 1 Polarization: 48.73 SS G_CDS: -0.27 Total: 48.46 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 5.43 Total: -3.69 kcal Atomic # 7 Polarization: -141.65 SS G_CDS: -4.51 Total: -146.16 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -80.55 2.63 -77.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733177173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.336 kcal (2) G-P(sol) polarization free energy of solvation -80.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds