Wall clock time and date at job start Tue Mar 31 2020 22:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 110.78061 * 2 1 4 4 C 1.34777 * 120.00030 * 303.23840 * 3 2 1 5 5 O 1.21279 * 120.00150 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00278 * 180.02562 * 4 3 2 7 7 C 1.50700 * 109.47343 * 180.02562 * 6 4 3 8 8 C 1.36107 * 120.12241 * 264.72280 * 7 6 4 9 9 C 1.39316 * 121.06630 * 179.68051 * 8 7 6 10 10 C 1.36175 * 120.86305 * 0.64569 * 9 8 7 11 11 C 1.40385 * 119.61670 * 359.66014 * 10 9 8 12 12 C 1.40779 * 121.37859 * 180.02562 * 11 10 9 13 13 C 1.36575 * 118.15064 * 179.97438 * 12 11 10 14 14 C 1.39338 * 119.93351 * 359.97438 * 13 12 11 15 15 N 1.31075 * 121.75876 * 0.02562 * 14 13 12 16 16 C 1.33682 * 121.32219 * 359.97438 * 15 14 13 17 17 C 1.55151 * 110.71741 * 123.23736 * 2 1 3 18 18 C 1.54914 * 101.58023 * 153.86287 * 17 2 1 19 19 N 1.47420 * 104.83159 * 322.99181 * 18 17 2 20 20 C 1.36945 * 125.64792 * 204.08975 * 19 18 17 21 21 H 1.07997 * 119.99756 * 180.02562 * 20 19 18 22 22 C 1.38805 * 119.99878 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.47020 * 108.70626 * 24.35323 * 19 18 17 29 29 H 1.08995 * 109.47166 * 296.76593 * 1 2 3 30 30 H 1.09000 * 109.47069 * 56.76058 * 1 2 3 31 31 H 1.08991 * 109.47197 * 176.76236 * 1 2 3 32 32 H 0.97000 * 120.00525 * 123.23771 * 3 2 1 33 33 H 1.09004 * 109.46599 * 300.00371 * 6 4 3 34 34 H 1.08998 * 109.46874 * 60.00016 * 6 4 3 35 35 H 1.07998 * 119.46561 * 0.02562 * 8 7 6 36 36 H 1.07997 * 119.56842 * 180.30669 * 9 8 7 37 37 H 1.08007 * 120.18847 * 179.68401 * 10 9 8 38 38 H 1.08003 * 120.92388 * 0.02562 * 12 11 10 39 39 H 1.07994 * 120.03009 * 180.02562 * 13 12 11 40 40 H 1.08003 * 119.11685 * 180.02562 * 14 13 12 41 41 H 1.09002 * 111.00697 * 35.79181 * 17 2 1 42 42 H 1.08994 * 111.00548 * 271.93648 * 17 2 1 43 43 H 1.08999 * 110.37083 * 204.15142 * 18 17 2 44 44 H 1.08998 * 110.45606 * 81.87777 * 18 17 2 45 45 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.88406 * 118.12749 * 28 19 18 47 47 H 1.09001 * 109.88743 * 239.29401 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0498 1.3697 0.0000 4 6 1.6908 2.2267 -0.9762 5 8 0.9377 1.8639 -1.8550 6 6 2.2259 3.6355 -0.9766 7 6 1.6754 4.3817 -2.1646 8 6 2.3968 4.4602 -3.3161 9 6 1.9040 5.1392 -4.4283 10 6 0.6902 5.7554 -4.3893 11 6 -0.0785 5.7002 -3.2160 12 6 -1.3383 6.3234 -3.1350 13 6 -2.0303 6.2276 -1.9614 14 6 -1.4847 5.5269 -0.8877 15 7 -0.3114 4.9479 -0.9665 16 6 0.4173 5.0035 -2.0859 17 6 2.0789 -0.7954 1.2138 18 6 3.4633 -1.2498 0.6875 19 7 3.2445 -1.5508 -0.7390 20 6 4.0043 -2.3970 -1.5018 21 1 3.7611 -2.5508 -2.5427 22 6 5.0869 -3.0571 -0.9371 23 7 5.3829 -2.8701 0.3317 24 14 6.1229 -4.2120 -1.9774 25 1 7.2104 -4.7866 -1.1454 26 1 5.2682 -5.3076 -2.5012 27 1 6.7141 -3.4595 -3.1129 28 6 2.0793 -0.7870 -1.2087 29 1 -0.3633 0.4628 0.9175 30 1 -0.3633 0.5633 -0.8595 31 1 -0.3633 -1.0259 -0.0580 32 1 2.6524 1.6598 0.7026 33 1 1.9226 4.1396 -0.0589 34 1 3.3140 3.6108 -1.0350 35 1 3.3644 3.9837 -3.3703 36 1 2.4947 5.1822 -5.3313 37 1 0.3210 6.2831 -5.2563 38 1 -1.7465 6.8614 -3.9778 39 1 -2.9997 6.6938 -1.8661 40 1 -2.0435 5.4592 0.0340 41 1 1.4451 -1.6535 1.4375 42 1 2.1850 -0.1518 2.0870 43 1 3.7960 -2.1427 1.2169 44 1 4.1946 -0.4492 0.7985 45 1 6.1393 -3.3317 0.7264 46 1 2.3814 -0.0970 -1.9965 47 1 1.3155 -1.4687 -1.5830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733407686.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:23 Heat of formation + Delta-G solvation = 48.762180 kcal Electronic energy + Delta-G solvation = -29344.727863 eV Core-core repulsion = 25493.074579 eV Total energy + Delta-G solvation = -3851.653285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.04847 -39.69000 -37.57388 -36.92340 -34.19280 -33.84772 -32.02611 -31.25643 -30.65463 -29.90435 -28.62280 -27.41011 -25.61032 -24.33254 -23.71123 -23.58623 -21.83782 -20.40756 -20.06314 -18.88683 -18.39479 -17.19150 -17.04557 -16.81430 -16.50153 -15.47770 -15.10486 -14.66859 -14.63352 -14.44215 -14.29322 -14.03337 -13.66220 -13.53203 -13.21774 -13.09208 -12.90467 -12.71125 -12.33390 -12.08874 -11.83059 -11.77269 -11.64775 -11.58694 -11.49686 -11.29787 -10.90081 -10.81448 -10.60345 -10.31778 -10.26697 -10.08396 -9.85669 -9.60634 -9.58514 -9.13263 -8.86749 -8.61328 -8.48611 -8.25401 -6.76985 -5.61481 -3.01713 0.26806 0.72643 1.86428 2.81788 3.10118 3.43375 3.47165 3.48761 3.59814 4.04116 4.20494 4.36769 4.53132 4.56512 4.66526 4.74654 4.91641 5.02958 5.10047 5.21805 5.22209 5.33871 5.40065 5.46538 5.54019 5.55941 5.65664 5.69803 5.81849 5.83121 5.91108 5.96240 6.14768 6.26589 6.27537 6.30507 6.34959 6.39938 6.45307 6.54204 6.61377 6.75568 6.80986 6.89754 7.25236 7.50035 7.67007 7.82145 7.85883 8.00995 8.39635 8.70609 9.27141 9.87915 10.53363 11.42721 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.002828 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.280244 B = 9900.118453 C =10863.527649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 N -0.710 5.710 4 C 0.525 3.475 5 O -0.534 6.534 6 C -0.100 4.100 7 C -0.030 4.030 8 C -0.094 4.094 9 C -0.107 4.107 10 C -0.105 4.105 11 C -0.102 4.102 12 C -0.059 4.059 13 C -0.179 4.179 14 C 0.127 3.873 15 N -0.464 5.464 16 C 0.142 3.858 17 C -0.147 4.147 18 C 0.153 3.847 19 N -0.604 5.604 20 C -0.217 4.217 21 H 0.075 0.925 22 C -0.013 4.013 23 N -0.925 5.925 24 Si 0.914 3.086 25 H -0.290 1.290 26 H -0.285 1.285 27 H -0.286 1.286 28 C 0.139 3.861 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.397 0.603 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.156 0.844 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.107 0.893 44 H 0.010 0.990 45 H 0.251 0.749 46 H 0.030 0.970 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.663 21.125 -2.102 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.076 3.924 3 N -0.361 5.361 4 C 0.311 3.689 5 O -0.410 6.410 6 C -0.140 4.140 7 C -0.031 4.031 8 C -0.113 4.113 9 C -0.125 4.125 10 C -0.124 4.124 11 C -0.104 4.104 12 C -0.086 4.086 13 C -0.199 4.199 14 C -0.046 4.046 15 N -0.172 5.172 16 C 0.021 3.979 17 C -0.186 4.186 18 C 0.028 3.972 19 N -0.330 5.330 20 C -0.345 4.345 21 H 0.093 0.907 22 C -0.208 4.208 23 N -0.574 5.574 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.212 1.212 27 H -0.213 1.213 28 C 0.012 3.988 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.231 0.769 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.174 0.826 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.028 0.972 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -11.576 20.205 -2.044 23.376 hybrid contribution 0.481 0.042 -0.969 1.083 sum -11.095 20.247 -3.013 23.284 Atomic orbital electron populations 1.22043 0.94332 1.02110 1.02369 1.21299 0.92967 0.80538 0.97623 1.45947 1.49679 1.12063 1.28377 1.20146 0.80973 0.86228 0.81543 1.90649 1.35746 1.78136 1.36500 1.20586 1.01557 0.93377 0.98450 1.18953 0.92272 0.96473 0.95426 1.20840 1.00488 0.97978 0.92040 1.20890 0.96069 0.97044 0.98473 1.20927 0.94732 1.00148 0.96587 1.18795 0.95927 1.00194 0.95445 1.21429 0.92864 0.96259 0.97999 1.21850 1.01588 1.01889 0.94567 1.22928 0.91610 0.91740 0.98341 1.67975 1.06610 1.17187 1.25418 1.18597 0.94191 0.95900 0.89213 1.23345 1.01173 0.98824 0.95208 1.21921 0.89399 1.00570 0.85264 1.44508 1.30988 1.50105 1.07408 1.19050 1.06062 1.16506 0.92928 0.90671 1.24753 0.98804 1.00787 0.96463 1.69773 1.30212 1.46561 1.10896 0.86153 0.79750 0.80662 0.78965 1.21606 1.21197 1.21314 1.21592 0.90204 0.93031 0.93974 0.93298 0.90594 0.92096 0.76948 0.87362 0.88147 0.85144 0.85417 0.85438 0.84641 0.84768 0.82639 0.90680 0.91909 0.87527 0.97201 0.93791 0.95249 0.95426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.44 37.16 0.31 -2.27 16 2 C 0.16 3.03 0.81 -129.98 -0.11 2.93 16 3 N -0.71 -11.75 5.14 -45.91 -0.24 -11.98 16 4 C 0.53 8.85 7.03 -10.98 -0.08 8.77 16 5 O -0.53 -10.81 13.01 5.56 0.07 -10.74 16 6 C -0.10 -1.32 5.56 -29.03 -0.16 -1.48 16 7 C -0.03 -0.42 4.38 -104.51 -0.46 -0.87 16 8 C -0.09 -1.16 9.56 -39.95 -0.38 -1.54 16 9 C -0.11 -1.13 9.96 -39.92 -0.40 -1.53 16 10 C -0.11 -1.08 9.77 -39.52 -0.39 -1.47 16 11 C -0.10 -1.22 5.74 -106.80 -0.61 -1.83 16 12 C -0.06 -0.55 9.90 -39.22 -0.39 -0.94 16 13 C -0.18 -1.54 10.03 -39.77 -0.40 -1.94 16 14 C 0.13 1.32 11.14 -17.47 -0.19 1.13 16 15 N -0.46 -6.33 9.51 -10.98 -0.10 -6.43 16 16 C 0.14 1.99 6.58 -84.86 -0.56 1.44 16 17 C -0.15 -2.75 6.07 -24.58 -0.15 -2.90 16 18 C 0.15 3.69 5.87 -2.53 -0.01 3.67 16 19 N -0.60 -15.95 3.39 -170.07 -0.58 -16.53 16 20 C -0.22 -6.24 10.27 -15.06 -0.15 -6.40 16 21 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 22 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 23 N -0.93 -27.04 10.09 55.49 0.56 -26.48 16 24 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 C 0.14 3.21 6.19 -3.06 -0.02 3.19 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.44 5.97 -51.93 -0.31 1.13 16 31 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 32 H 0.40 5.65 8.49 -40.82 -0.35 5.30 16 33 H 0.11 1.30 7.71 -51.93 -0.40 0.89 16 34 H 0.10 1.12 8.03 -51.93 -0.42 0.70 16 35 H 0.13 1.44 8.04 -52.49 -0.42 1.02 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 41 H 0.07 1.40 8.05 -51.93 -0.42 0.98 16 42 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 43 H 0.11 2.89 5.87 -51.93 -0.30 2.59 16 44 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 46 H 0.03 0.74 6.90 -51.93 -0.36 0.38 16 47 H 0.03 0.66 7.77 -51.93 -0.40 0.25 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -35.15 380.51 -10.54 -45.69 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.72 Total: 5.78 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -4.24 Total: -2.50 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.36 Total: -61.42 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.15 -10.54 -45.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733407686.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.456 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds