Wall clock time and date at job start Tue Mar 31 2020 22:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 110.78061 * 2 1 4 4 C 1.34777 * 120.00030 * 303.23840 * 3 2 1 5 5 O 1.21279 * 120.00150 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00278 * 180.02562 * 4 3 2 7 7 C 1.50700 * 109.47343 * 180.02562 * 6 4 3 8 8 C 1.36107 * 120.12241 * 264.72280 * 7 6 4 9 9 C 1.39316 * 121.06630 * 179.68051 * 8 7 6 10 10 C 1.36175 * 120.86305 * 0.64569 * 9 8 7 11 11 C 1.40385 * 119.61670 * 359.66014 * 10 9 8 12 12 C 1.40779 * 121.37859 * 180.02562 * 11 10 9 13 13 C 1.36575 * 118.15064 * 179.97438 * 12 11 10 14 14 C 1.39338 * 119.93351 * 359.97438 * 13 12 11 15 15 N 1.31075 * 121.75876 * 0.02562 * 14 13 12 16 16 C 1.33682 * 121.32219 * 359.97438 * 15 14 13 17 17 C 1.55151 * 110.71741 * 123.23736 * 2 1 3 18 18 C 1.54914 * 101.58023 * 153.86287 * 17 2 1 19 19 N 1.47420 * 104.83159 * 322.99181 * 18 17 2 20 20 C 1.36945 * 125.64792 * 204.08975 * 19 18 17 21 21 H 1.07997 * 119.99756 * 180.02562 * 20 19 18 22 22 C 1.38805 * 119.99878 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.47020 * 108.70626 * 24.35323 * 19 18 17 29 29 H 1.08995 * 109.47166 * 296.76593 * 1 2 3 30 30 H 1.09000 * 109.47069 * 56.76058 * 1 2 3 31 31 H 1.08991 * 109.47197 * 176.76236 * 1 2 3 32 32 H 0.97000 * 120.00525 * 123.23771 * 3 2 1 33 33 H 1.09004 * 109.46599 * 300.00371 * 6 4 3 34 34 H 1.08998 * 109.46874 * 60.00016 * 6 4 3 35 35 H 1.07998 * 119.46561 * 0.02562 * 8 7 6 36 36 H 1.07997 * 119.56842 * 180.30669 * 9 8 7 37 37 H 1.08007 * 120.18847 * 179.68401 * 10 9 8 38 38 H 1.08003 * 120.92388 * 0.02562 * 12 11 10 39 39 H 1.07994 * 120.03009 * 180.02562 * 13 12 11 40 40 H 1.08003 * 119.11685 * 180.02562 * 14 13 12 41 41 H 1.09002 * 111.00697 * 35.79181 * 17 2 1 42 42 H 1.08994 * 111.00548 * 271.93648 * 17 2 1 43 43 H 1.08999 * 110.37083 * 204.15142 * 18 17 2 44 44 H 1.08998 * 110.45606 * 81.87777 * 18 17 2 45 45 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.88406 * 118.12749 * 28 19 18 47 47 H 1.09001 * 109.88743 * 239.29401 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0498 1.3697 0.0000 4 6 1.6908 2.2267 -0.9762 5 8 0.9377 1.8639 -1.8550 6 6 2.2259 3.6355 -0.9766 7 6 1.6754 4.3817 -2.1646 8 6 2.3968 4.4602 -3.3161 9 6 1.9040 5.1392 -4.4283 10 6 0.6902 5.7554 -4.3893 11 6 -0.0785 5.7002 -3.2160 12 6 -1.3383 6.3234 -3.1350 13 6 -2.0303 6.2276 -1.9614 14 6 -1.4847 5.5269 -0.8877 15 7 -0.3114 4.9479 -0.9665 16 6 0.4173 5.0035 -2.0859 17 6 2.0789 -0.7954 1.2138 18 6 3.4633 -1.2498 0.6875 19 7 3.2445 -1.5508 -0.7390 20 6 4.0043 -2.3970 -1.5018 21 1 3.7611 -2.5508 -2.5427 22 6 5.0869 -3.0571 -0.9371 23 7 5.3829 -2.8701 0.3317 24 14 6.1229 -4.2120 -1.9774 25 1 7.2104 -4.7866 -1.1454 26 1 5.2682 -5.3076 -2.5012 27 1 6.7141 -3.4595 -3.1129 28 6 2.0793 -0.7870 -1.2087 29 1 -0.3633 0.4628 0.9175 30 1 -0.3633 0.5633 -0.8595 31 1 -0.3633 -1.0259 -0.0580 32 1 2.6524 1.6598 0.7026 33 1 1.9226 4.1396 -0.0589 34 1 3.3140 3.6108 -1.0350 35 1 3.3644 3.9837 -3.3703 36 1 2.4947 5.1822 -5.3313 37 1 0.3210 6.2831 -5.2563 38 1 -1.7465 6.8614 -3.9778 39 1 -2.9997 6.6938 -1.8661 40 1 -2.0435 5.4592 0.0340 41 1 1.4451 -1.6535 1.4375 42 1 2.1850 -0.1518 2.0870 43 1 3.7960 -2.1427 1.2169 44 1 4.1946 -0.4492 0.7985 45 1 6.1393 -3.3317 0.7264 46 1 2.3814 -0.0970 -1.9965 47 1 1.3155 -1.4687 -1.5830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733407686.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:22 Heat of formation + Delta-G solvation = 26.593590 kcal Electronic energy + Delta-G solvation = -29345.689165 eV Core-core repulsion = 25493.074579 eV Total energy + Delta-G solvation = -3852.614587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.90541 -41.07487 -38.98198 -37.95076 -35.70960 -35.00127 -33.66854 -32.41327 -31.49184 -31.42926 -30.37316 -28.41573 -27.55695 -25.44480 -25.06756 -24.49183 -22.97021 -22.20918 -21.31086 -20.41474 -19.16141 -18.99849 -18.00240 -17.85074 -17.67787 -17.08487 -16.68939 -16.17561 -15.64100 -15.52673 -15.45476 -15.28281 -15.00821 -14.67415 -14.50578 -14.32515 -14.06000 -13.89884 -13.81567 -13.63325 -13.31067 -13.22387 -12.89468 -12.76650 -12.74675 -12.64502 -12.53419 -12.13402 -12.09106 -12.03978 -11.97444 -11.69115 -11.54707 -11.37939 -10.75348 -10.55929 -10.36968 -9.96474 -9.67386 -9.09462 -8.89755 -7.79185 -5.23101 -0.50777 -0.07300 1.05446 1.44457 1.47556 1.54203 1.78573 2.01224 2.34818 2.48172 3.18506 3.29889 3.42083 3.55865 3.62073 3.70483 3.83366 3.91762 4.01531 4.06227 4.10181 4.16859 4.18170 4.29108 4.40881 4.48164 4.58689 4.62316 4.64199 4.66042 4.80038 4.85357 4.88864 4.92380 4.99752 5.09103 5.10375 5.16689 5.18360 5.32857 5.41537 5.47752 5.49939 5.61173 5.65562 5.72577 5.80615 5.97952 6.30190 6.69870 7.03236 7.10368 7.39850 7.76081 8.40209 9.22008 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.002828 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.280244 B = 9900.118453 C =10863.527649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.172 3.828 3 N -0.706 5.706 4 C 0.523 3.477 5 O -0.570 6.570 6 C -0.089 4.089 7 C -0.062 4.062 8 C -0.105 4.105 9 C -0.121 4.121 10 C -0.099 4.099 11 C -0.126 4.126 12 C -0.061 4.061 13 C -0.176 4.176 14 C 0.118 3.882 15 N -0.501 5.501 16 C 0.114 3.886 17 C -0.127 4.127 18 C 0.157 3.843 19 N -0.622 5.622 20 C -0.245 4.245 21 H 0.069 0.931 22 C -0.060 4.060 23 N -0.944 5.944 24 Si 0.979 3.021 25 H -0.287 1.287 26 H -0.279 1.279 27 H -0.281 1.281 28 C 0.140 3.860 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.409 0.591 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.152 0.848 37 H 0.161 0.839 38 H 0.170 0.830 39 H 0.172 0.828 40 H 0.180 0.820 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.076 0.924 44 H -0.005 1.005 45 H 0.249 0.751 46 H 0.005 0.995 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.042 22.784 -2.236 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.085 3.915 3 N -0.358 5.358 4 C 0.311 3.689 5 O -0.449 6.449 6 C -0.128 4.128 7 C -0.063 4.063 8 C -0.125 4.125 9 C -0.139 4.139 10 C -0.118 4.118 11 C -0.128 4.128 12 C -0.086 4.086 13 C -0.195 4.195 14 C -0.055 4.055 15 N -0.210 5.210 16 C -0.007 4.007 17 C -0.166 4.166 18 C 0.032 3.968 19 N -0.348 5.348 20 C -0.374 4.374 21 H 0.087 0.913 22 C -0.253 4.253 23 N -0.593 5.593 24 Si 0.807 3.193 25 H -0.213 1.213 26 H -0.205 1.205 27 H -0.208 1.208 28 C 0.014 3.986 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.245 0.755 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.151 0.849 36 H 0.170 0.830 37 H 0.178 0.822 38 H 0.187 0.813 39 H 0.189 0.811 40 H 0.197 0.803 41 H 0.099 0.901 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.013 0.987 45 H 0.059 0.941 46 H 0.023 0.977 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -12.956 21.890 -2.160 25.528 hybrid contribution 0.844 -0.425 -0.965 1.350 sum -12.112 21.465 -3.125 24.844 Atomic orbital electron populations 1.21933 0.92675 1.02343 1.02793 1.21094 0.93971 0.81162 0.95238 1.45894 1.49872 1.11114 1.28929 1.20777 0.80146 0.87386 0.80618 1.90625 1.37402 1.79037 1.37832 1.20529 1.02214 0.90836 0.99261 1.19117 0.93239 0.97910 0.96015 1.21074 1.00693 0.98231 0.92497 1.21198 0.96836 0.97062 0.98803 1.21344 0.94162 0.99223 0.97053 1.19183 0.97450 1.00688 0.95488 1.21878 0.91749 0.95608 0.99399 1.22247 1.02772 1.00900 0.93613 1.23529 0.90957 0.90950 1.00020 1.67944 1.08111 1.18988 1.25913 1.18855 0.94565 0.96922 0.90319 1.23198 0.97606 0.99612 0.96196 1.21745 0.92168 0.98745 0.84124 1.44780 1.31501 1.50134 1.08420 1.19331 1.07151 1.17652 0.93246 0.91344 1.25559 0.99784 1.02188 0.97756 1.70007 1.30266 1.46995 1.12023 0.85148 0.78020 0.78644 0.77474 1.21276 1.20462 1.20777 1.21634 0.89022 0.92504 0.95442 0.90750 0.92464 0.91687 0.75483 0.86279 0.86591 0.84926 0.83011 0.82166 0.81256 0.81093 0.80287 0.90069 0.88125 0.90586 0.98716 0.94099 0.97718 0.96573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 8.44 71.98 0.61 -4.03 16 2 C 0.17 6.40 0.81 4.80 0.00 6.40 16 3 N -0.71 -23.16 5.14 -417.55 -2.15 -25.31 16 4 C 0.52 17.88 7.03 87.66 0.62 18.50 16 5 O -0.57 -23.82 13.01 -3.03 -0.04 -23.86 16 6 C -0.09 -2.38 5.56 29.10 0.16 -2.22 16 7 C -0.06 -1.74 4.38 -19.79 -0.09 -1.83 16 8 C -0.11 -2.66 9.56 22.03 0.21 -2.44 16 9 C -0.12 -2.48 9.96 22.05 0.22 -2.26 16 10 C -0.10 -1.89 9.77 22.31 0.22 -1.67 16 11 C -0.13 -2.87 5.74 -21.28 -0.12 -3.00 16 12 C -0.06 -0.97 9.90 22.50 0.22 -0.75 16 13 C -0.18 -2.55 10.03 22.15 0.22 -2.33 16 14 C 0.12 2.29 11.14 85.07 0.95 3.24 16 15 N -0.50 -13.54 9.51 -188.64 -1.79 -15.33 16 16 C 0.11 3.21 6.58 40.29 0.27 3.47 16 17 C -0.13 -4.63 6.07 31.99 0.19 -4.44 16 18 C 0.16 7.66 5.87 86.86 0.51 8.17 16 19 N -0.62 -33.80 3.39 -691.97 -2.35 -36.15 16 20 C -0.24 -14.48 10.27 84.03 0.86 -13.62 16 21 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 22 C -0.06 -3.47 5.49 84.86 0.47 -3.01 16 23 N -0.94 -56.12 10.09 21.65 0.22 -55.90 16 24 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 27 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 28 C 0.14 6.69 6.19 86.73 0.54 7.23 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.06 2.16 5.97 -2.39 -0.01 2.15 16 31 H 0.06 2.09 8.07 -2.39 -0.02 2.07 16 32 H 0.41 11.26 8.49 -92.71 -0.79 10.47 16 33 H 0.12 2.86 7.71 -2.39 -0.02 2.84 16 34 H 0.12 2.63 8.03 -2.39 -0.02 2.61 16 35 H 0.13 3.06 8.04 -2.91 -0.02 3.04 16 36 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 38 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 39 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 40 H 0.18 2.33 8.06 -2.91 -0.02 2.30 16 41 H 0.08 2.89 8.05 -2.39 -0.02 2.87 16 42 H 0.10 2.92 8.07 -2.39 -0.02 2.90 16 43 H 0.08 4.22 5.87 -2.39 -0.01 4.20 16 44 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 46 H 0.00 0.25 6.90 -2.39 -0.02 0.24 16 47 H 0.02 0.80 7.77 -2.39 -0.02 0.78 16 Total: -1.00 -79.66 380.51 2.18 -77.48 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.20 Total: 24.91 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 6.06 Total: 5.40 kcal Atomic # 7 Polarization: -126.61 SS G_CDS: -6.07 Total: -132.68 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.04 Total: -23.86 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -79.66 2.18 -77.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733407686.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.073 kcal (2) G-P(sol) polarization free energy of solvation -79.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds