Wall clock time and date at job start Tue Mar 31 2020 22:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 110.65705 * 2 1 4 4 N 1.46501 * 109.46900 * 56.80905 * 3 2 1 5 5 C 1.36941 * 119.99882 * 180.02562 * 4 3 2 6 6 H 1.08007 * 119.99694 * 359.97438 * 5 4 3 7 7 C 1.38806 * 120.00367 * 179.97438 * 5 4 3 8 8 N 1.31626 * 119.99725 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00270 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47128 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46931 * 120.00121 * 9 7 5 12 12 H 1.48499 * 109.47002 * 239.99485 * 9 7 5 13 13 C 1.54608 * 110.73786 * 236.80710 * 2 1 3 14 14 C 1.54002 * 105.04705 * 263.50914 * 13 2 1 15 15 N 1.47482 * 107.08274 * 1.31195 * 14 13 2 16 16 C 1.34784 * 127.03693 * 154.51545 * 15 14 13 17 17 O 1.21538 * 120.00230 * 175.89553 * 16 15 14 18 18 C 1.47896 * 119.99720 * 355.62433 * 16 15 14 19 19 C 1.38894 * 121.11724 * 36.38710 * 18 16 15 20 20 C 1.39266 * 119.58484 * 179.73805 * 19 18 16 21 21 N 1.31004 * 121.87792 * 0.58347 * 20 19 18 22 22 C 1.33529 * 121.82842 * 359.69485 * 21 20 19 23 23 C 1.40718 * 120.96906 * 180.02562 * 22 21 20 24 24 C 1.36062 * 119.73963 * 179.97438 * 23 22 21 25 25 C 1.39352 * 121.05595 * 0.02562 * 24 23 22 26 26 C 1.36252 * 120.83779 * 359.93422 * 25 24 23 27 27 C 1.40101 * 119.64126 * 0.08506 * 26 25 24 28 28 C 1.48121 * 105.93391 * 334.77253 * 15 14 13 29 29 H 1.09000 * 109.46759 * 183.19009 * 1 2 3 30 30 H 1.08999 * 109.47238 * 303.18878 * 1 2 3 31 31 H 1.08997 * 109.47147 * 63.19054 * 1 2 3 32 32 H 1.08999 * 109.47193 * 176.80879 * 3 2 1 33 33 H 1.08997 * 109.47369 * 296.81089 * 3 2 1 34 34 H 0.96995 * 120.00785 * 359.97438 * 4 3 2 35 35 H 0.96996 * 119.99600 * 179.97438 * 8 7 5 36 36 H 1.09006 * 110.32710 * 144.61934 * 13 2 1 37 37 H 1.08992 * 110.41817 * 22.44880 * 13 2 1 38 38 H 1.08997 * 109.91564 * 241.94503 * 14 13 2 39 39 H 1.09006 * 109.91395 * 120.66955 * 14 13 2 40 40 H 1.08006 * 120.20770 * 0.02562 * 19 18 16 41 41 H 1.08000 * 119.06544 * 180.27807 * 20 19 18 42 42 H 1.08002 * 120.13153 * 359.97438 * 23 22 21 43 43 H 1.07997 * 119.47349 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.58136 * 179.97438 * 25 24 23 45 45 H 1.07993 * 120.17590 * 180.02562 * 26 25 24 46 46 H 1.08999 * 110.66188 * 157.50425 * 28 15 14 47 47 H 1.08999 * 110.66356 * 280.63027 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 7 1.5345 2.1553 1.1559 5 6 1.8809 3.4635 1.3650 6 1 2.5490 3.9617 0.6780 7 6 1.3734 4.1494 2.4599 8 7 0.5588 3.5424 3.2968 9 14 1.8464 5.9338 2.7455 10 1 2.7671 6.3802 1.6694 11 1 0.6246 6.7779 2.7328 12 1 2.5229 6.0620 4.0613 13 6 2.0775 -0.7916 -1.2100 14 6 2.3763 -2.2003 -0.6641 15 7 1.9871 -2.2052 0.7584 16 6 1.6221 -3.2722 1.4966 17 8 1.3969 -3.1416 2.6837 18 6 1.4898 -4.6009 0.8606 19 6 2.3535 -5.0019 -0.1505 20 6 2.2033 -6.2624 -0.7234 21 7 1.2581 -7.0864 -0.3443 22 6 0.3887 -6.7664 0.6173 23 6 -0.6194 -7.6659 1.0107 24 6 -1.4918 -7.3141 1.9939 25 6 -1.4053 -6.0729 2.6214 26 6 -0.4418 -5.1768 2.2673 27 6 0.4730 -5.5056 1.2584 28 6 2.0734 -0.7966 1.2085 29 1 -0.3633 -1.0261 0.0572 30 1 -0.3634 0.5625 0.8600 31 1 -0.3633 0.4635 -0.9172 32 1 3.1581 1.4096 0.0572 33 1 1.7643 1.9351 -0.9171 34 1 0.9342 1.7080 1.7727 35 1 0.2044 4.0216 4.0621 36 1 2.9910 -0.3286 -1.5834 37 1 1.3293 -0.8429 -2.0008 38 1 3.4403 -2.4171 -0.7587 39 1 1.7937 -2.9417 -1.2109 40 1 3.1396 -4.3422 -0.4872 41 1 2.8823 -6.5674 -1.5058 42 1 -0.7004 -8.6317 0.5342 43 1 -2.2641 -8.0076 2.2921 44 1 -2.1105 -5.8181 3.3987 45 1 -0.3844 -4.2181 2.7609 46 1 1.4489 -0.6346 2.0870 47 1 3.1077 -0.5213 1.4143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733427569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:01 Heat of formation + Delta-G solvation = 21.722007 kcal Electronic energy + Delta-G solvation = -29106.919448 eV Core-core repulsion = 25254.093614 eV Total energy + Delta-G solvation = -3852.825834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.26789 -41.02439 -39.26810 -38.12393 -36.54101 -34.82873 -34.10770 -32.25050 -31.62062 -31.08474 -30.47510 -28.14849 -27.48019 -25.98734 -24.92377 -24.63429 -23.65125 -23.30692 -20.80962 -20.21966 -19.47366 -19.02129 -18.53739 -17.98775 -17.26775 -17.09818 -16.50084 -16.42296 -15.77467 -15.59508 -15.53334 -15.35940 -15.16489 -15.06582 -14.88549 -14.65512 -14.56177 -14.08787 -13.92586 -13.55180 -13.47205 -13.02806 -12.97194 -12.83053 -12.82266 -12.60482 -12.54866 -12.36026 -12.11211 -12.08614 -11.78159 -11.66084 -11.54383 -11.40947 -11.38256 -10.94822 -10.49579 -9.88712 -9.79862 -9.34106 -8.97520 -7.93968 -5.22331 -0.93544 -0.25960 0.62822 1.46895 1.47598 1.51222 1.57682 1.73778 1.96905 2.56269 3.02592 3.11452 3.28317 3.39957 3.53072 3.57371 3.62913 3.65826 3.81759 3.84259 4.08992 4.15790 4.17633 4.24620 4.29479 4.34174 4.37200 4.48912 4.52814 4.60197 4.68387 4.74699 4.76475 4.82872 4.93781 4.98689 5.02571 5.03725 5.05886 5.10947 5.25640 5.30516 5.33436 5.43205 5.45087 5.45647 5.51928 5.81607 6.27963 6.35039 6.78499 6.85812 7.34408 8.11904 8.32748 9.29963 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.002574 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.148731 B =10877.225912 C =11801.374861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 C 0.167 3.833 4 N -0.746 5.746 5 C -0.237 4.237 6 H 0.080 0.920 7 C -0.080 4.080 8 N -0.973 5.973 9 Si 0.972 3.028 10 H -0.262 1.262 11 H -0.296 1.296 12 H -0.297 1.297 13 C -0.114 4.114 14 C 0.090 3.910 15 N -0.605 5.605 16 C 0.568 3.432 17 O -0.574 6.574 18 C -0.084 4.084 19 C -0.126 4.126 20 C 0.132 3.868 21 N -0.474 5.474 22 C 0.107 3.893 23 C -0.100 4.100 24 C -0.093 4.093 25 C -0.110 4.110 26 C -0.125 4.125 27 C -0.087 4.087 28 C 0.124 3.876 29 H 0.049 0.951 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.178 0.822 41 H 0.211 0.789 42 H 0.158 0.842 43 H 0.168 0.832 44 H 0.147 0.853 45 H 0.117 0.883 46 H 0.045 0.955 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 -24.602 -13.763 28.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.074 4.074 3 C 0.041 3.959 4 N -0.389 5.389 5 C -0.369 4.369 6 H 0.098 0.902 7 C -0.272 4.272 8 N -0.624 5.624 9 Si 0.802 3.198 10 H -0.186 1.186 11 H -0.223 1.223 12 H -0.225 1.225 13 C -0.152 4.152 14 C -0.031 4.031 15 N -0.336 5.336 16 C 0.358 3.642 17 O -0.455 6.455 18 C -0.095 4.095 19 C -0.146 4.146 20 C -0.040 4.040 21 N -0.182 5.182 22 C -0.014 4.014 23 C -0.118 4.118 24 C -0.112 4.112 25 C -0.128 4.128 26 C -0.144 4.144 27 C -0.090 4.090 28 C 0.002 3.998 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.205 0.795 35 H 0.057 0.943 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.195 0.805 41 H 0.227 0.773 42 H 0.176 0.824 43 H 0.185 0.815 44 H 0.165 0.835 45 H 0.135 0.865 46 H 0.064 0.936 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.850 -25.299 -13.499 28.735 hybrid contribution -0.189 2.251 1.767 2.868 sum 1.661 -23.048 -11.732 25.916 Atomic orbital electron populations 1.21617 0.94307 1.00323 1.01710 1.21674 0.95815 0.94452 0.95411 1.20826 0.95939 0.89290 0.89869 1.42679 1.56882 1.10462 1.28862 1.19697 1.21699 0.89043 1.06468 0.90170 1.25581 1.00904 1.02510 0.98233 1.69847 1.38115 1.37719 1.16715 0.85081 0.77124 0.80173 0.77441 1.18606 1.22322 1.22480 1.22616 1.03483 0.92978 0.96133 1.22738 1.02255 0.99172 0.78901 1.48764 1.64974 1.06550 1.13351 1.18133 0.76661 0.83880 0.85507 1.90769 1.52323 1.85553 1.16837 1.20243 0.98019 0.93266 0.97980 1.22988 0.99076 0.99047 0.93478 1.23655 0.94177 0.88440 0.97729 1.67880 1.03704 1.34871 1.11761 1.19120 0.96484 0.91823 0.93986 1.21147 0.93223 0.99690 0.97761 1.21332 0.99020 0.96275 0.94591 1.21357 0.97581 0.93899 0.99937 1.21358 0.95267 1.01096 0.96664 1.18799 0.96685 0.95023 0.98453 1.22331 1.00873 0.79217 0.97403 0.93204 0.95169 0.91249 0.95079 0.94906 0.79487 0.94252 0.87834 0.88451 0.87614 0.88510 0.80519 0.77271 0.82399 0.81497 0.83543 0.86470 0.93620 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.92 8.30 71.98 0.60 -3.32 16 2 C -0.07 -2.12 0.64 -51.09 -0.03 -2.15 16 3 C 0.17 6.11 5.11 86.38 0.44 6.56 16 4 N -0.75 -37.14 5.16 -343.45 -1.77 -38.91 16 5 C -0.24 -13.08 9.99 84.03 0.84 -12.24 16 6 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 7 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 8 N -0.97 -61.02 13.06 21.65 0.28 -60.74 16 9 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 12 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 13 C -0.11 -2.03 6.08 31.48 0.19 -1.84 16 14 C 0.09 1.44 5.23 86.53 0.45 1.89 16 15 N -0.60 -16.23 3.19 -813.41 -2.60 -18.82 16 16 C 0.57 17.82 7.31 86.80 0.63 18.46 16 17 O -0.57 -23.39 14.87 -3.83 -0.06 -23.45 16 18 C -0.08 -2.11 5.59 -19.68 -0.11 -2.22 16 19 C -0.13 -1.99 8.05 22.67 0.18 -1.81 16 20 C 0.13 1.84 11.14 85.06 0.95 2.78 16 21 N -0.47 -9.48 10.30 -188.73 -1.94 -11.42 16 22 C 0.11 2.46 6.61 40.35 0.27 2.72 16 23 C -0.10 -1.81 9.99 22.37 0.22 -1.59 16 24 C -0.09 -1.48 9.94 22.03 0.22 -1.26 16 25 C -0.11 -2.28 9.96 22.08 0.22 -2.06 16 26 C -0.13 -3.50 9.17 22.26 0.20 -3.29 16 27 C -0.09 -2.33 5.76 -21.09 -0.12 -2.45 16 28 C 0.12 4.10 5.65 86.61 0.49 4.59 16 29 H 0.05 1.50 8.07 -2.39 -0.02 1.48 16 30 H 0.03 1.20 6.69 -2.39 -0.02 1.19 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.03 1.10 8.11 -2.39 -0.02 1.08 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.37 20.35 6.21 -92.71 -0.58 19.77 16 35 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 36 H 0.10 1.49 7.85 -2.38 -0.02 1.47 16 37 H 0.10 1.44 7.87 -2.39 -0.02 1.42 16 38 H 0.11 1.05 7.45 -2.39 -0.02 1.03 16 39 H 0.10 1.20 6.58 -2.38 -0.02 1.18 16 40 H 0.18 1.60 5.72 -2.91 -0.02 1.59 16 41 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 43 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 44 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 45 H 0.12 3.94 5.84 -2.91 -0.02 3.92 16 46 H 0.05 1.91 7.79 -2.39 -0.02 1.89 16 47 H 0.08 2.51 8.02 -2.39 -0.02 2.49 16 Total: -1.00 -79.77 378.31 2.48 -77.30 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.42 Total: 28.88 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 6.11 Total: -1.43 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -6.03 Total: -129.90 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.06 Total: -23.45 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -79.77 2.48 -77.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733427569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.020 kcal (2) G-P(sol) polarization free energy of solvation -79.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds