Wall clock time and date at job start Tue Mar 31 2020 22:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 110.63985 * 2 1 4 4 N 1.46497 * 109.47109 * 298.31584 * 3 2 1 5 5 C 1.36938 * 120.00022 * 180.02562 * 4 3 2 6 6 H 1.08003 * 120.00050 * 359.97438 * 5 4 3 7 7 C 1.38816 * 120.00310 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99556 * 0.02562 * 7 5 4 9 9 Si 1.86790 * 120.00120 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47491 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47113 * 120.00190 * 9 7 5 12 12 H 1.48499 * 109.47352 * 240.00162 * 9 7 5 13 13 C 1.55152 * 110.87627 * 123.25234 * 2 1 3 14 14 C 1.55126 * 101.48889 * 82.76425 * 13 2 1 15 15 N 1.47428 * 104.72064 * 37.29743 * 14 13 2 16 16 C 1.34770 * 125.64482 * 155.81982 * 15 14 13 17 17 O 1.21544 * 119.99740 * 184.93471 * 16 15 14 18 18 C 1.47907 * 120.00588 * 4.92775 * 16 15 14 19 19 C 1.38890 * 121.10573 * 38.62180 * 18 16 15 20 20 C 1.39272 * 119.57660 * 179.97438 * 19 18 16 21 21 N 1.30997 * 121.88363 * 359.97438 * 20 19 18 22 22 C 1.33530 * 121.82673 * 359.97438 * 21 20 19 23 23 C 1.40725 * 120.96993 * 180.02562 * 22 21 20 24 24 C 1.36058 * 119.73800 * 179.97438 * 23 22 21 25 25 C 1.39357 * 121.05653 * 359.97438 * 24 23 22 26 26 C 1.36244 * 120.83858 * 0.02562 * 25 24 23 27 27 C 1.40102 * 119.64195 * 359.97438 * 26 25 24 28 28 C 1.47023 * 108.70297 * 335.55038 * 15 14 13 29 29 H 1.09000 * 109.46973 * 181.68936 * 1 2 3 30 30 H 1.09001 * 109.47178 * 301.68632 * 1 2 3 31 31 H 1.08997 * 109.47541 * 61.68803 * 1 2 3 32 32 H 1.08996 * 109.47090 * 58.31588 * 3 2 1 33 33 H 1.09002 * 109.46752 * 178.31452 * 3 2 1 34 34 H 0.96999 * 120.00467 * 359.97438 * 4 3 2 35 35 H 0.96996 * 119.99583 * 180.02562 * 8 7 5 36 36 H 1.08993 * 111.00754 * 201.00816 * 13 2 1 37 37 H 1.09004 * 111.00005 * 324.85752 * 13 2 1 38 38 H 1.08998 * 110.49871 * 278.45715 * 14 13 2 39 39 H 1.09002 * 110.34254 * 156.06127 * 14 13 2 40 40 H 1.08004 * 120.21565 * 359.95968 * 19 18 16 41 41 H 1.08001 * 119.05783 * 180.26018 * 20 19 18 42 42 H 1.07991 * 120.13026 * 359.96462 * 23 22 21 43 43 H 1.07997 * 119.46917 * 180.02562 * 24 23 22 44 44 H 1.08002 * 119.57671 * 180.02562 * 25 24 23 45 45 H 1.08007 * 120.17689 * 179.97438 * 26 25 24 46 46 H 1.09000 * 109.87930 * 120.70341 * 28 15 14 47 47 H 1.08995 * 109.88309 * 241.71887 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 7 1.6284 2.1197 -1.2159 5 6 1.9923 3.4213 -1.4365 6 1 2.6041 3.9408 -0.7138 7 6 1.5749 4.0730 -2.5889 8 7 0.8289 3.4400 -3.4693 9 14 2.0708 5.8487 -2.8893 10 1 2.9034 6.3285 -1.7572 11 1 2.8510 5.9383 -4.1497 12 1 0.8527 6.6908 -3.0003 13 6 2.0829 -0.7949 1.2123 14 6 2.0141 -2.2517 0.6839 15 7 2.3757 -2.1506 -0.7418 16 6 2.8902 -3.1435 -1.4939 17 8 3.2352 -2.9227 -2.6383 18 6 3.0351 -4.5019 -0.9269 19 6 2.0671 -5.0355 -0.0860 20 6 2.2357 -6.3182 0.4296 21 7 3.2872 -7.0457 0.1448 22 6 4.2568 -6.5983 -0.6569 23 6 5.3785 -7.3955 -0.9513 24 6 6.3516 -6.9148 -1.7718 25 6 6.2574 -5.6411 -2.3294 26 6 5.1861 -4.8412 -2.0668 27 6 4.1654 -5.3040 -1.2262 28 6 2.0759 -0.7891 -1.2087 29 1 -0.3633 -1.0272 0.0303 30 1 -0.3633 0.5398 0.8745 31 1 -0.3634 0.4874 -0.9047 32 1 1.6923 1.9621 0.8745 33 1 3.1587 1.4097 0.0302 34 1 1.0792 1.6531 -1.8652 35 1 0.5376 3.8953 -4.2747 36 1 3.1096 -0.5044 1.4346 37 1 1.4446 -0.6678 2.0867 38 1 1.0052 -2.6498 0.7920 39 1 2.7298 -2.8810 1.2130 40 1 1.1892 -4.4593 0.1667 41 1 1.4757 -6.7265 1.0793 42 1 5.4666 -8.3849 -0.5275 43 1 7.2103 -7.5304 -1.9951 44 1 7.0435 -5.2836 -2.9779 45 1 5.1242 -3.8557 -2.5044 46 1 2.9850 -0.3161 -1.5802 47 1 1.3270 -0.8250 -1.9998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733427570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:05 Heat of formation + Delta-G solvation = 39.579728 kcal Electronic energy + Delta-G solvation = -28986.642048 eV Core-core repulsion = 25134.590582 eV Total energy + Delta-G solvation = -3852.051466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.38506 -39.99860 -38.08107 -37.35779 -34.93070 -33.74723 -32.72005 -30.86400 -30.63570 -30.24093 -29.15573 -26.91445 -25.99577 -24.76722 -23.92823 -23.53823 -22.63168 -22.02176 -19.83636 -18.93100 -18.48273 -17.71259 -17.43282 -16.81328 -16.33914 -16.03651 -15.32288 -14.93988 -14.75776 -14.66367 -14.43676 -14.16038 -14.06304 -13.94618 -13.61708 -13.51607 -13.18198 -12.89598 -12.67401 -12.27285 -12.15828 -12.04686 -11.94920 -11.77721 -11.68596 -11.60398 -11.06093 -10.88787 -10.82694 -10.57679 -10.49700 -10.44522 -10.30861 -9.96635 -9.66541 -9.59978 -9.09166 -8.90183 -8.68486 -8.51486 -6.94251 -5.77810 -3.06746 -0.11250 0.49798 1.49188 2.52728 2.70358 2.87722 3.42900 3.48458 3.50786 3.82548 3.93577 4.07910 4.36190 4.42624 4.49350 4.55665 4.57330 4.70954 4.80862 4.89511 4.92559 5.03226 5.18740 5.24755 5.26372 5.32476 5.39774 5.51771 5.56221 5.60784 5.73002 5.78727 5.80712 5.93065 6.00158 6.03888 6.04341 6.09931 6.18698 6.22901 6.24948 6.31531 6.42271 6.55201 6.58176 6.68278 6.76946 7.39222 7.54849 7.69297 7.98107 8.40659 9.52271 10.08514 10.42953 11.44979 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.002558 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.160008 B =10945.454864 C =11940.789374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C 0.169 3.831 4 N -0.731 5.731 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.906 3.094 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.123 4.123 14 C 0.096 3.904 15 N -0.605 5.605 16 C 0.568 3.432 17 O -0.521 6.521 18 C -0.056 4.056 19 C -0.145 4.145 20 C 0.128 3.872 21 N -0.463 5.463 22 C 0.126 3.874 23 C -0.098 4.098 24 C -0.097 4.097 25 C -0.116 4.116 26 C -0.089 4.089 27 C -0.068 4.068 28 C 0.121 3.879 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.146 0.854 41 H 0.166 0.834 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.147 0.853 46 H 0.080 0.920 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.803 -22.342 10.865 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.078 4.078 3 C 0.041 3.959 4 N -0.375 5.375 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.161 4.161 14 C -0.027 4.027 15 N -0.338 5.338 16 C 0.356 3.644 17 O -0.398 6.398 18 C -0.067 4.067 19 C -0.166 4.166 20 C -0.044 4.044 21 N -0.171 5.171 22 C 0.004 3.996 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.134 4.134 26 C -0.107 4.107 27 C -0.071 4.071 28 C 0.000 4.000 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.164 0.836 41 H 0.183 0.817 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.164 0.836 46 H 0.099 0.901 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.272 -22.951 10.516 25.790 hybrid contribution -0.169 1.706 -0.796 1.890 sum 5.103 -21.245 9.720 23.914 Atomic orbital electron populations 1.21760 0.93173 1.00601 1.03376 1.21840 0.96500 0.96284 0.93168 1.20640 0.96123 0.87944 0.91207 1.42373 1.62582 1.11844 1.20744 1.19244 1.26207 0.88421 1.03249 0.91160 1.24738 1.00553 0.98368 0.97233 1.69662 1.40421 1.36387 1.11536 0.86128 0.77604 0.84857 0.77648 1.20591 1.21879 1.21888 1.22911 1.02473 0.92777 0.97930 1.22583 1.00287 0.98773 0.81049 1.48463 1.61796 1.12184 1.11388 1.17705 0.78158 0.83233 0.85347 1.90814 1.48817 1.82621 1.17545 1.20382 0.95126 0.94531 0.96652 1.22548 0.99857 0.97621 0.96563 1.22909 0.94765 0.90213 0.96495 1.67802 1.01333 1.35557 1.12451 1.18843 0.94493 0.91250 0.94965 1.20790 0.92238 0.99845 0.98803 1.20983 0.98687 0.95857 0.96127 1.21056 0.98306 0.94183 0.99830 1.21418 0.92255 1.01415 0.95656 1.18633 0.95087 0.94402 0.98953 1.22171 1.01666 0.79301 0.96891 0.93525 0.92270 0.91083 0.95709 0.96150 0.78112 0.93525 0.90209 0.89493 0.90928 0.90693 0.83623 0.81704 0.84535 0.85099 0.85170 0.83589 0.90149 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.26 37.16 0.31 -1.54 16 2 C -0.08 -1.12 0.61 -152.67 -0.09 -1.22 16 3 C 0.17 3.18 5.07 -4.04 -0.02 3.16 16 4 N -0.73 -17.74 5.15 -59.91 -0.31 -18.05 16 5 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 6 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 9 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 C -0.12 -1.32 6.04 -24.47 -0.15 -1.47 16 14 C 0.10 0.95 4.97 -2.41 -0.01 0.94 16 15 N -0.61 -8.32 3.32 -171.47 -0.57 -8.89 16 16 C 0.57 8.61 7.19 -12.30 -0.09 8.53 16 17 O -0.52 -9.79 15.10 5.33 0.08 -9.71 16 18 C -0.06 -0.70 5.40 -104.34 -0.56 -1.27 16 19 C -0.15 -1.39 8.32 -38.96 -0.32 -1.71 16 20 C 0.13 1.14 11.14 -17.52 -0.20 0.94 16 21 N -0.46 -5.21 10.30 -11.00 -0.11 -5.32 16 22 C 0.13 1.51 6.61 -84.87 -0.56 0.95 16 23 C -0.10 -0.96 9.99 -39.43 -0.39 -1.35 16 24 C -0.10 -0.83 9.94 -39.95 -0.40 -1.23 16 25 C -0.12 -1.15 9.96 -39.88 -0.40 -1.55 16 26 C -0.09 -1.13 9.17 -39.60 -0.36 -1.49 16 27 C -0.07 -0.88 5.76 -106.52 -0.61 -1.50 16 28 C 0.12 1.97 5.47 -3.06 -0.02 1.96 16 29 H 0.05 0.54 7.44 -51.93 -0.39 0.16 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.20 7.11 -51.93 -0.37 0.83 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 34 H 0.38 9.83 6.37 -40.82 -0.26 9.57 16 35 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 37 H 0.09 0.76 8.04 -51.93 -0.42 0.35 16 38 H 0.07 0.58 6.61 -51.93 -0.34 0.24 16 39 H 0.07 0.65 7.33 -51.93 -0.38 0.27 16 40 H 0.15 1.06 6.07 -52.48 -0.32 0.74 16 41 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.15 2.08 5.92 -52.48 -0.31 1.77 16 46 H 0.08 1.53 7.82 -51.93 -0.41 1.13 16 47 H 0.07 1.33 7.85 -51.93 -0.41 0.92 16 LS Contribution 378.57 15.07 5.70 5.70 Total: -1.00 -33.74 378.57 -10.15 -43.89 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.52 Total: 7.36 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -4.13 Total: -5.06 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.27 Total: -59.53 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.74 -10.15 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733427570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.473 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds