Wall clock time and date at job start Tue Mar 31 2020 22:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 110.63985 * 2 1 4 4 N 1.46497 * 109.47109 * 298.31584 * 3 2 1 5 5 C 1.36938 * 120.00022 * 180.02562 * 4 3 2 6 6 H 1.08003 * 120.00050 * 359.97438 * 5 4 3 7 7 C 1.38816 * 120.00310 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99556 * 0.02562 * 7 5 4 9 9 Si 1.86790 * 120.00120 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47491 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47113 * 120.00190 * 9 7 5 12 12 H 1.48499 * 109.47352 * 240.00162 * 9 7 5 13 13 C 1.55152 * 110.87627 * 123.25234 * 2 1 3 14 14 C 1.55126 * 101.48889 * 82.76425 * 13 2 1 15 15 N 1.47428 * 104.72064 * 37.29743 * 14 13 2 16 16 C 1.34770 * 125.64482 * 155.81982 * 15 14 13 17 17 O 1.21544 * 119.99740 * 184.93471 * 16 15 14 18 18 C 1.47907 * 120.00588 * 4.92775 * 16 15 14 19 19 C 1.38890 * 121.10573 * 38.62180 * 18 16 15 20 20 C 1.39272 * 119.57660 * 179.97438 * 19 18 16 21 21 N 1.30997 * 121.88363 * 359.97438 * 20 19 18 22 22 C 1.33530 * 121.82673 * 359.97438 * 21 20 19 23 23 C 1.40725 * 120.96993 * 180.02562 * 22 21 20 24 24 C 1.36058 * 119.73800 * 179.97438 * 23 22 21 25 25 C 1.39357 * 121.05653 * 359.97438 * 24 23 22 26 26 C 1.36244 * 120.83858 * 0.02562 * 25 24 23 27 27 C 1.40102 * 119.64195 * 359.97438 * 26 25 24 28 28 C 1.47023 * 108.70297 * 335.55038 * 15 14 13 29 29 H 1.09000 * 109.46973 * 181.68936 * 1 2 3 30 30 H 1.09001 * 109.47178 * 301.68632 * 1 2 3 31 31 H 1.08997 * 109.47541 * 61.68803 * 1 2 3 32 32 H 1.08996 * 109.47090 * 58.31588 * 3 2 1 33 33 H 1.09002 * 109.46752 * 178.31452 * 3 2 1 34 34 H 0.96999 * 120.00467 * 359.97438 * 4 3 2 35 35 H 0.96996 * 119.99583 * 180.02562 * 8 7 5 36 36 H 1.08993 * 111.00754 * 201.00816 * 13 2 1 37 37 H 1.09004 * 111.00005 * 324.85752 * 13 2 1 38 38 H 1.08998 * 110.49871 * 278.45715 * 14 13 2 39 39 H 1.09002 * 110.34254 * 156.06127 * 14 13 2 40 40 H 1.08004 * 120.21565 * 359.95968 * 19 18 16 41 41 H 1.08001 * 119.05783 * 180.26018 * 20 19 18 42 42 H 1.07991 * 120.13026 * 359.96462 * 23 22 21 43 43 H 1.07997 * 119.46917 * 180.02562 * 24 23 22 44 44 H 1.08002 * 119.57671 * 180.02562 * 25 24 23 45 45 H 1.08007 * 120.17689 * 179.97438 * 26 25 24 46 46 H 1.09000 * 109.87930 * 120.70341 * 28 15 14 47 47 H 1.08995 * 109.88309 * 241.71887 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 7 1.6284 2.1197 -1.2159 5 6 1.9923 3.4213 -1.4365 6 1 2.6041 3.9408 -0.7138 7 6 1.5749 4.0730 -2.5889 8 7 0.8289 3.4400 -3.4693 9 14 2.0708 5.8487 -2.8893 10 1 2.9034 6.3285 -1.7572 11 1 2.8510 5.9383 -4.1497 12 1 0.8527 6.6908 -3.0003 13 6 2.0829 -0.7949 1.2123 14 6 2.0141 -2.2517 0.6839 15 7 2.3757 -2.1506 -0.7418 16 6 2.8902 -3.1435 -1.4939 17 8 3.2352 -2.9227 -2.6383 18 6 3.0351 -4.5019 -0.9269 19 6 2.0671 -5.0355 -0.0860 20 6 2.2357 -6.3182 0.4296 21 7 3.2872 -7.0457 0.1448 22 6 4.2568 -6.5983 -0.6569 23 6 5.3785 -7.3955 -0.9513 24 6 6.3516 -6.9148 -1.7718 25 6 6.2574 -5.6411 -2.3294 26 6 5.1861 -4.8412 -2.0668 27 6 4.1654 -5.3040 -1.2262 28 6 2.0759 -0.7891 -1.2087 29 1 -0.3633 -1.0272 0.0303 30 1 -0.3633 0.5398 0.8745 31 1 -0.3634 0.4874 -0.9047 32 1 1.6923 1.9621 0.8745 33 1 3.1587 1.4097 0.0302 34 1 1.0792 1.6531 -1.8652 35 1 0.5376 3.8953 -4.2747 36 1 3.1096 -0.5044 1.4346 37 1 1.4446 -0.6678 2.0867 38 1 1.0052 -2.6498 0.7920 39 1 2.7298 -2.8810 1.2130 40 1 1.1892 -4.4593 0.1667 41 1 1.4757 -6.7265 1.0793 42 1 5.4666 -8.3849 -0.5275 43 1 7.2103 -7.5304 -1.9951 44 1 7.0435 -5.2836 -2.9779 45 1 5.1242 -3.8557 -2.5044 46 1 2.9850 -0.3161 -1.5802 47 1 1.3270 -0.8250 -1.9998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733427570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:04 Heat of formation + Delta-G solvation = 17.871307 kcal Electronic energy + Delta-G solvation = -28987.583395 eV Core-core repulsion = 25134.590582 eV Total energy + Delta-G solvation = -3852.992813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.27519 -41.05329 -39.30708 -38.11976 -36.54988 -34.83679 -34.14688 -32.32138 -31.61679 -31.10009 -30.34707 -28.06879 -27.53311 -25.96042 -24.96357 -24.63111 -23.68537 -23.28258 -20.82765 -20.21842 -19.44857 -19.05102 -18.54612 -17.98145 -17.49236 -16.97486 -16.67662 -16.28595 -15.80905 -15.68047 -15.53330 -15.32811 -15.23831 -14.92501 -14.89599 -14.75479 -14.51228 -14.10508 -13.81232 -13.54899 -13.38584 -13.12013 -12.93568 -12.83827 -12.82091 -12.75650 -12.56798 -12.36393 -12.12609 -12.04536 -11.86761 -11.67464 -11.54055 -11.41617 -11.37500 -10.96996 -10.51920 -9.86134 -9.82232 -9.34214 -8.99710 -7.96069 -5.24200 -0.93740 -0.25980 0.62268 1.45253 1.46448 1.52640 1.56171 1.71615 1.95418 2.54548 3.01888 3.10911 3.28126 3.37613 3.48132 3.54474 3.62685 3.64895 3.79014 3.82534 4.07931 4.12938 4.15909 4.23990 4.32250 4.36069 4.38570 4.48611 4.53701 4.55760 4.71813 4.76720 4.77693 4.88289 4.95003 4.98493 5.03124 5.04609 5.06994 5.18609 5.20337 5.28466 5.30570 5.44058 5.45199 5.48153 5.51866 5.81461 6.26217 6.30353 6.78390 6.84183 7.32876 8.09440 8.31390 9.27730 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.002558 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.160008 B =10945.454864 C =11940.789374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.068 4.068 3 C 0.166 3.834 4 N -0.743 5.743 5 C -0.241 4.241 6 H 0.076 0.924 7 C -0.078 4.078 8 N -0.970 5.970 9 Si 0.972 3.028 10 H -0.265 1.265 11 H -0.298 1.298 12 H -0.292 1.292 13 C -0.111 4.111 14 C 0.093 3.907 15 N -0.602 5.602 16 C 0.564 3.436 17 O -0.575 6.575 18 C -0.083 4.083 19 C -0.123 4.123 20 C 0.133 3.867 21 N -0.473 5.473 22 C 0.107 3.893 23 C -0.099 4.099 24 C -0.093 4.093 25 C -0.109 4.109 26 C -0.125 4.125 27 C -0.087 4.087 28 C 0.129 3.871 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.013 0.987 34 H 0.374 0.626 35 H 0.250 0.750 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.174 0.826 41 H 0.210 0.790 42 H 0.158 0.842 43 H 0.168 0.832 44 H 0.148 0.852 45 H 0.116 0.884 46 H 0.038 0.962 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 -24.645 14.307 28.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.069 4.069 3 C 0.039 3.961 4 N -0.386 5.386 5 C -0.373 4.373 6 H 0.094 0.906 7 C -0.270 4.270 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.189 1.189 11 H -0.225 1.225 12 H -0.219 1.219 13 C -0.149 4.149 14 C -0.028 4.028 15 N -0.334 5.334 16 C 0.353 3.647 17 O -0.455 6.455 18 C -0.094 4.094 19 C -0.143 4.143 20 C -0.039 4.039 21 N -0.182 5.182 22 C -0.014 4.014 23 C -0.118 4.118 24 C -0.112 4.112 25 C -0.126 4.126 26 C -0.144 4.144 27 C -0.090 4.090 28 C 0.006 3.994 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.207 0.793 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.141 0.859 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.192 0.808 41 H 0.227 0.773 42 H 0.176 0.824 43 H 0.185 0.815 44 H 0.166 0.834 45 H 0.134 0.866 46 H 0.057 0.943 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.058 -25.267 14.041 29.345 hybrid contribution -0.053 2.350 -1.815 2.970 sum 5.005 -22.917 12.225 26.452 Atomic orbital electron populations 1.21692 0.92156 1.02298 1.02047 1.21714 0.97084 0.93720 0.94385 1.20827 0.95699 0.90363 0.89209 1.42590 1.62372 1.11285 1.22342 1.19667 1.24964 0.89681 1.02964 0.90564 1.25560 1.01461 1.02490 0.97460 1.69827 1.42307 1.37952 1.12026 0.85091 0.77162 0.80166 0.77460 1.18884 1.22523 1.21879 1.22942 1.02835 0.92100 0.97061 1.22941 1.02785 0.98734 0.78312 1.48503 1.61201 1.10637 1.13063 1.18241 0.77139 0.84468 0.84815 1.90775 1.51028 1.83683 1.20039 1.20220 0.96908 0.93245 0.99041 1.22891 0.99219 0.97936 0.94244 1.23634 0.94741 0.89519 0.96002 1.67882 1.01853 1.36006 1.12421 1.19126 0.95673 0.91019 0.95562 1.21151 0.91633 1.00454 0.98527 1.21336 0.99545 0.95254 0.95074 1.21354 0.97555 0.94527 0.99195 1.21313 0.94293 1.01084 0.97699 1.18805 0.95377 0.95275 0.99512 1.21850 0.98946 0.81216 0.97381 0.90472 0.90804 0.94939 0.94512 0.96912 0.79329 0.94130 0.90504 0.85872 0.87460 0.88597 0.80836 0.77311 0.82392 0.81453 0.83442 0.86624 0.94327 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.32 8.26 71.98 0.59 -2.73 16 2 C -0.07 -1.95 0.61 -50.99 -0.03 -1.98 16 3 C 0.17 6.29 5.07 86.38 0.44 6.73 16 4 N -0.74 -37.43 5.15 -343.45 -1.77 -39.19 16 5 C -0.24 -13.51 9.99 84.03 0.84 -12.67 16 6 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 7 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 8 N -0.97 -60.64 13.06 21.65 0.28 -60.36 16 9 Si 0.97 46.95 29.55 68.60 2.03 48.98 16 10 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 12 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 13 C -0.11 -2.06 6.04 32.06 0.19 -1.86 16 14 C 0.09 1.54 4.97 86.93 0.43 1.98 16 15 N -0.60 -16.68 3.32 -814.69 -2.71 -19.39 16 16 C 0.56 17.99 7.19 86.81 0.62 18.61 16 17 O -0.57 -23.85 15.10 -3.85 -0.06 -23.91 16 18 C -0.08 -2.09 5.40 -19.68 -0.11 -2.20 16 19 C -0.12 -1.97 8.32 22.67 0.19 -1.79 16 20 C 0.13 1.85 11.14 85.07 0.95 2.80 16 21 N -0.47 -9.37 10.30 -188.73 -1.94 -11.31 16 22 C 0.11 2.42 6.61 40.35 0.27 2.69 16 23 C -0.10 -1.75 9.99 22.37 0.22 -1.52 16 24 C -0.09 -1.42 9.94 22.03 0.22 -1.20 16 25 C -0.11 -2.16 9.96 22.07 0.22 -1.94 16 26 C -0.13 -3.42 9.17 22.26 0.20 -3.21 16 27 C -0.09 -2.30 5.76 -21.10 -0.12 -2.42 16 28 C 0.13 4.46 5.47 86.73 0.47 4.93 16 29 H 0.08 1.57 7.44 -2.39 -0.02 1.55 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.03 1.11 7.11 -2.39 -0.02 1.10 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.01 0.51 8.13 -2.39 -0.02 0.49 16 34 H 0.37 20.27 6.37 -92.71 -0.59 19.68 16 35 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.08 1.51 8.04 -2.39 -0.02 1.49 16 37 H 0.12 1.49 8.04 -2.39 -0.02 1.47 16 38 H 0.11 1.12 6.61 -2.39 -0.02 1.10 16 39 H 0.10 1.29 7.33 -2.39 -0.02 1.27 16 40 H 0.17 1.71 6.07 -2.91 -0.02 1.69 16 41 H 0.21 0.97 8.06 -2.91 -0.02 0.94 16 42 H 0.16 2.02 8.06 -2.92 -0.02 1.99 16 43 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 44 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 45 H 0.12 3.80 5.92 -2.91 -0.02 3.78 16 46 H 0.04 1.63 7.82 -2.39 -0.02 1.61 16 47 H 0.05 1.87 7.85 -2.39 -0.02 1.85 16 Total: -1.00 -80.65 378.57 2.31 -78.33 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.41 Total: 26.69 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 6.07 Total: 0.16 kcal Atomic # 7 Polarization: -124.11 SS G_CDS: -6.14 Total: -130.25 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.06 Total: -23.91 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -80.65 2.31 -78.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733427570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.206 kcal (2) G-P(sol) polarization free energy of solvation -80.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds