Wall clock time and date at job start Tue Mar 31 2020 22:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.52024 * 2 1 4 4 N 1.46504 * 109.47324 * 299.91850 * 3 2 1 5 5 C 1.34776 * 120.00020 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99622 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00207 * 180.02562 * 5 4 3 8 8 N 1.46498 * 109.47342 * 179.97438 * 7 5 4 9 9 C 1.36373 * 125.96475 * 269.68470 * 8 7 5 10 10 O 1.35623 * 125.98500 * 0.04048 * 9 8 7 11 11 N 1.30909 * 108.02317 * 179.88382 * 9 8 7 12 12 N 1.40116 * 107.94028 * 0.37719 * 11 9 8 13 13 C 1.30905 * 107.93768 * 359.76006 * 12 11 9 14 14 O 1.35627 * 125.98491 * 179.97438 * 13 12 11 15 15 C 1.53350 * 109.47423 * 120.29436 * 2 1 3 16 16 C 1.53044 * 109.60707 * 58.55238 * 15 2 1 17 17 C 1.53196 * 109.31376 * 61.37177 * 16 15 2 18 18 N 1.46928 * 108.77379 * 305.36656 * 17 16 15 19 19 C 1.36936 * 120.62867 * 233.63089 * 18 17 16 20 20 H 1.08002 * 120.00030 * 151.82096 * 19 18 17 21 21 C 1.38813 * 120.00044 * 331.81337 * 19 18 17 22 22 N 1.31618 * 120.00004 * 343.08058 * 21 19 18 23 23 Si 1.86806 * 119.99953 * 163.07948 * 21 19 18 24 24 H 1.48496 * 109.47191 * 90.00149 * 23 21 19 25 25 H 1.48501 * 109.46981 * 210.00196 * 23 21 19 26 26 H 1.48500 * 109.46794 * 329.99854 * 23 21 19 27 27 C 1.46924 * 118.73914 * 53.60715 * 18 17 16 28 28 H 1.09002 * 109.46902 * 180.08351 * 1 2 3 29 29 H 1.09002 * 109.47093 * 300.07627 * 1 2 3 30 30 H 1.08992 * 109.47392 * 60.08359 * 1 2 3 31 31 H 1.09004 * 109.47145 * 59.91989 * 3 2 1 32 32 H 1.08999 * 109.47335 * 179.97438 * 3 2 1 33 33 H 0.96996 * 119.99697 * 0.02562 * 4 3 2 34 34 H 1.09004 * 109.46551 * 299.99588 * 7 5 4 35 35 H 1.08999 * 109.47214 * 59.99114 * 7 5 4 36 36 H 0.96695 * 114.00353 * 90.00068 * 10 9 8 37 37 H 0.96705 * 114.00616 * 270.02472 * 14 13 12 38 38 H 1.08995 * 109.41840 * 298.51416 * 15 2 1 39 39 H 1.08996 * 109.43236 * 178.59691 * 15 2 1 40 40 H 1.09000 * 109.49626 * 301.42206 * 16 15 2 41 41 H 1.08996 * 109.49701 * 181.31987 * 16 15 2 42 42 H 1.08997 * 109.59086 * 185.58003 * 17 16 15 43 43 H 1.09001 * 109.70482 * 65.22018 * 17 16 15 44 44 H 0.96996 * 119.99787 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.58845 * 66.18040 * 27 18 17 46 46 H 1.09003 * 109.58558 * 186.46077 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 7 1.5551 2.1325 -1.1972 5 6 1.8826 3.4223 -1.4108 6 8 2.5793 4.0115 -0.6118 7 6 1.3821 4.1328 -2.6420 8 7 1.8717 5.5136 -2.6420 9 6 1.2351 6.5891 -2.0963 10 8 0.0386 6.5675 -1.4582 11 7 1.9829 7.6453 -2.2935 12 7 3.1275 7.2394 -2.9924 13 6 3.0409 5.9487 -3.1929 14 8 3.9537 5.1792 -3.8363 15 6 2.0413 -0.7293 1.2483 16 6 1.5034 -2.1620 1.2625 17 6 2.0141 -2.9072 0.0253 18 7 1.6514 -2.1383 -1.1731 19 6 0.9628 -2.7287 -2.1989 20 1 0.3185 -2.1340 -2.8295 21 6 1.0929 -4.0915 -2.4284 22 7 2.1013 -4.7541 -1.9026 23 14 -0.1633 -4.9851 -3.4835 24 1 0.2725 -4.9566 -4.9028 25 1 -0.2785 -6.3942 -3.0293 26 1 -1.4823 -4.3148 -3.3570 27 6 2.0413 -0.7238 -1.2496 28 1 -0.3633 -1.0277 0.0015 29 1 -0.3633 0.5150 0.8893 30 1 -0.3634 0.5125 -0.8906 31 1 1.6772 1.9566 0.8893 32 1 3.1313 1.4411 0.0005 33 1 0.9976 1.6614 -1.8360 34 1 1.7455 3.6181 -3.5314 35 1 0.2921 4.1341 -2.6428 36 1 0.1036 6.4157 -0.5054 37 1 3.8030 5.1031 -4.7885 38 1 1.6994 -0.2043 2.1402 39 1 3.1310 -0.7507 1.2350 40 1 0.4136 -2.1416 1.2508 41 1 1.8486 -2.6714 2.1622 42 1 1.5554 -3.8949 -0.0217 43 1 3.0979 -3.0099 0.0794 44 1 2.1919 -5.7065 -2.0627 45 1 3.1275 -0.6462 -1.2980 46 1 1.6027 -0.2714 -2.1390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733461438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:15 Heat of formation + Delta-G solvation = 0.927147 kcal Electronic energy + Delta-G solvation = -30362.791912 eV Core-core repulsion = 26098.215082 eV Total energy + Delta-G solvation = -4264.576830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.59088 -40.08476 -38.55510 -38.48051 -37.38612 -35.21826 -34.58199 -33.37883 -31.13115 -30.58588 -29.85370 -28.69595 -26.72305 -25.56498 -25.23397 -23.07498 -22.52063 -22.21360 -21.09459 -20.67673 -19.18190 -19.12709 -18.21967 -17.66356 -17.17164 -16.77977 -16.50023 -15.83126 -15.72627 -15.47527 -14.96461 -14.60439 -14.23072 -14.00124 -13.91714 -13.66354 -13.29749 -13.22283 -13.11279 -12.79484 -12.70459 -12.34110 -12.31500 -11.86806 -11.69068 -11.41692 -11.09970 -11.03024 -10.94136 -10.83984 -10.74450 -10.60242 -10.34783 -10.20820 -10.05087 -9.94287 -9.69963 -9.65081 -9.48622 -9.22716 -8.56529 -6.77640 -5.89952 -3.33341 1.14709 1.43076 1.94635 2.20354 2.82582 2.96604 3.27748 3.35951 3.36642 3.46534 4.04917 4.29549 4.37852 4.49142 4.87600 4.91137 4.91550 5.08572 5.14011 5.30323 5.35660 5.47417 5.65587 5.70641 5.73837 5.78150 5.89946 5.99660 6.04670 6.15791 6.24834 6.38054 6.45013 6.51948 6.62457 6.67905 6.70712 6.77709 6.84661 6.97141 7.21399 7.29480 7.57158 7.60101 7.67360 7.85402 8.33047 9.09303 9.72809 10.29616 11.18189 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.002614 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.453874 B =10707.497986 C =11346.324618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 C 0.134 3.866 4 N -0.711 5.711 5 C 0.495 3.505 6 O -0.532 6.532 7 C 0.080 3.920 8 N -0.496 5.496 9 C 0.416 3.584 10 O -0.438 6.438 11 N -0.295 5.295 12 N -0.297 5.297 13 C 0.419 3.581 14 O -0.432 6.432 15 C -0.094 4.094 16 C -0.143 4.143 17 C 0.169 3.831 18 N -0.587 5.587 19 C -0.255 4.255 20 H 0.064 0.936 21 C 0.005 3.995 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.160 3.840 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.406 0.594 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.415 0.585 37 H 0.411 0.589 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.017 0.983 44 H 0.254 0.746 45 H 0.018 0.982 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 14.713 0.136 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.096 4.096 3 C 0.010 3.990 4 N -0.364 5.364 5 C 0.278 3.722 6 O -0.408 6.408 7 C -0.048 4.048 8 N -0.216 5.216 9 C 0.106 3.894 10 O -0.239 6.239 11 N -0.139 5.139 12 N -0.141 5.141 13 C 0.109 3.891 14 O -0.232 6.232 15 C -0.132 4.132 16 C -0.182 4.182 17 C 0.043 3.957 18 N -0.309 5.309 19 C -0.385 4.385 20 H 0.082 0.918 21 C -0.194 4.194 22 N -0.544 5.544 23 Si 0.730 3.270 24 H -0.214 1.214 25 H -0.215 1.215 26 H -0.205 1.205 27 C 0.033 3.967 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.242 0.758 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.274 0.726 37 H 0.270 0.730 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.035 0.965 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.890 16.427 0.687 16.694 hybrid contribution -1.343 -2.513 -0.805 2.961 sum -4.233 13.914 -0.118 14.544 Atomic orbital electron populations 1.21767 0.94140 1.03287 0.99485 1.21418 0.96615 0.92013 0.99507 1.21510 0.99185 0.92151 0.86109 1.46020 1.52993 1.11094 1.26270 1.20527 0.81350 0.82821 0.87465 1.90786 1.37337 1.66159 1.46521 1.21763 1.02841 0.80328 0.99869 1.46593 1.17955 1.08886 1.48189 1.21260 0.87362 0.83518 0.97293 1.84887 1.19146 1.92675 1.27144 1.78355 0.99051 1.19099 1.17376 1.78363 1.13047 1.04960 1.17716 1.21270 0.82158 0.88552 0.97135 1.85031 1.43879 1.67690 1.26565 1.21404 1.00016 0.96588 0.95241 1.22222 1.00802 0.95137 1.00080 1.20799 0.96708 0.95595 0.82583 1.43964 1.65130 1.05118 1.16649 1.19088 1.18767 0.91769 1.08844 0.91841 1.25045 0.97078 0.98185 0.99137 1.70029 1.28230 1.08408 1.47692 0.86343 0.81396 0.79199 0.80066 1.21411 1.21548 1.20489 1.20863 0.96062 0.86681 0.93074 0.90336 0.94092 0.93935 0.91725 0.91404 0.75795 0.85361 0.85120 0.72630 0.73041 0.93425 0.92517 0.92260 0.93233 0.89563 0.96462 0.93546 0.96440 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 7.82 37.16 0.29 -1.46 16 2 C -0.09 -1.32 0.53 -154.23 -0.08 -1.40 16 3 C 0.13 1.67 4.58 -4.04 -0.02 1.65 16 4 N -0.71 -7.30 5.00 -60.29 -0.30 -7.60 16 5 C 0.50 5.31 7.90 -10.99 -0.09 5.22 16 6 O -0.53 -8.06 16.43 5.55 0.09 -7.97 16 7 C 0.08 0.57 6.49 -5.20 -0.03 0.53 16 8 N -0.50 -5.00 2.25 -121.35 -0.27 -5.27 16 9 C 0.42 4.65 9.15 -88.81 -0.81 3.84 16 10 O -0.44 -3.56 13.57 -18.57 -0.25 -3.82 16 11 N -0.30 -4.15 12.72 29.65 0.38 -3.77 16 12 N -0.30 -4.21 12.72 29.65 0.38 -3.83 16 13 C 0.42 4.80 9.15 -88.81 -0.81 3.99 16 14 O -0.43 -3.78 13.58 -18.58 -0.25 -4.03 16 15 C -0.09 -1.40 4.73 -26.53 -0.13 -1.53 16 16 C -0.14 -2.46 5.74 -26.61 -0.15 -2.61 16 17 C 0.17 3.70 5.30 -3.71 -0.02 3.68 16 18 N -0.59 -13.04 2.44 -172.32 -0.42 -13.46 16 19 C -0.26 -6.33 9.58 -15.06 -0.14 -6.47 16 20 H 0.06 1.52 7.89 -52.49 -0.41 1.11 16 21 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 22 N -0.90 -24.73 11.20 55.49 0.62 -24.11 16 23 Si 0.90 20.30 29.59 -169.99 -5.03 15.27 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.16 2.85 4.92 -3.71 -0.02 2.83 16 28 H 0.08 1.30 5.97 -51.93 -0.31 0.99 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.51 6.87 -51.93 -0.36 0.15 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.41 3.55 6.22 -40.82 -0.25 3.30 16 34 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.13 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.41 1.75 9.06 45.56 0.41 2.16 16 37 H 0.41 1.05 9.06 45.56 0.41 1.46 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.06 1.02 6.34 -51.93 -0.33 0.69 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 2.15 6.06 -51.93 -0.31 1.84 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 0.80 6.83 -51.93 -0.35 0.45 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -35.55 375.67 -6.37 -41.93 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.87 Total: 2.70 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -2.10 Total: 8.31 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.38 Total: -58.05 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.41 Total: -15.82 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.55 -6.37 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733461438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.853 kcal (2) G-P(sol) polarization free energy of solvation -35.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds