Wall clock time and date at job start Tue Mar 31 2020 22:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39431 * 119.53895 * 2 1 4 4 C 1.35995 * 121.07954 * 179.97438 * 3 2 1 5 5 C 1.40824 * 119.73813 * 0.02562 * 4 3 2 6 6 N 1.33274 * 120.98084 * 180.25070 * 5 4 3 7 7 C 1.31873 * 121.29691 * 180.26029 * 6 5 4 8 8 C 1.48278 * 119.23935 * 179.76234 * 7 6 5 9 9 O 1.21499 * 119.99780 * 179.72593 * 8 7 6 10 10 N 1.34777 * 120.00257 * 359.72325 * 8 7 6 11 11 C 1.46497 * 120.00244 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47363 * 174.81240 * 11 10 8 13 13 N 1.46500 * 112.84702 * 311.21570 * 12 11 10 14 14 C 1.36942 * 119.99844 * 293.74020 * 13 12 11 15 15 H 1.07999 * 119.99896 * 354.42529 * 14 13 12 16 16 C 1.38817 * 119.99985 * 174.42361 * 14 13 12 17 17 N 1.31616 * 119.99943 * 180.02562 * 16 14 13 18 18 Si 1.86808 * 119.99852 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46893 * 90.00143 * 18 16 14 20 20 H 1.48495 * 109.46538 * 210.00137 * 18 16 14 21 21 H 1.48502 * 109.47004 * 329.99793 * 18 16 14 22 22 C 1.53785 * 113.69079 * 82.48012 * 12 11 10 23 23 C 1.53775 * 87.08041 * 139.99447 * 22 12 11 24 24 C 1.53773 * 113.61721 * 180.02562 * 12 11 10 25 25 C 1.40281 * 121.51947 * 359.47555 * 7 6 5 26 26 C 1.36507 * 119.81689 * 0.26626 * 25 7 6 27 27 C 1.40759 * 118.24508 * 359.97438 * 26 25 7 28 28 C 1.36134 * 119.53971 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47011 * 89.99723 * 1 2 3 30 30 H 1.08999 * 109.47306 * 209.99569 * 1 2 3 31 31 H 1.09002 * 109.47013 * 329.99615 * 1 2 3 32 32 H 1.07997 * 119.46263 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.13397 * 179.97438 * 4 3 2 34 34 H 0.97004 * 119.99496 * 359.97438 * 10 8 7 35 35 H 1.08999 * 109.46945 * 54.81036 * 11 10 8 36 36 H 1.08999 * 109.47107 * 294.81175 * 11 10 8 37 37 H 0.97008 * 120.00498 * 114.02466 * 13 12 11 38 38 H 0.96995 * 119.99915 * 179.97438 * 17 16 14 39 39 H 1.09004 * 113.61045 * 254.54764 * 22 12 11 40 40 H 1.08997 * 113.61304 * 25.44558 * 22 12 11 41 41 H 1.08998 * 113.61506 * 220.01988 * 23 22 12 42 42 H 1.08997 * 113.61590 * 89.11466 * 23 22 12 43 43 H 1.09004 * 113.61741 * 334.48175 * 24 12 11 44 44 H 1.09001 * 113.61468 * 105.38358 * 24 12 11 45 45 H 1.07998 * 120.09220 * 180.28149 * 25 7 6 46 46 H 1.07999 * 120.87561 * 179.97438 * 26 25 7 47 47 H 1.07995 * 120.17669 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.2131 0.0000 4 6 3.5539 1.2496 0.0005 5 6 4.2850 0.0461 0.0005 6 7 5.6177 0.0530 0.0060 7 6 6.3087 -1.0702 0.0009 8 6 7.7902 -1.0093 0.0021 9 8 8.4404 -2.0356 0.0025 10 7 8.4156 0.1846 0.0026 11 6 9.8793 0.2449 0.0031 12 6 10.3299 1.7012 -0.1268 13 7 9.6515 2.4118 -1.2135 14 6 9.8720 2.0446 -2.5142 15 1 10.6125 1.2930 -2.7450 16 6 9.1438 2.6383 -3.5361 17 7 9.3554 2.2850 -4.7861 18 14 7.8635 3.9388 -3.1368 19 1 8.5005 5.2802 -3.1476 20 1 6.7815 3.8964 -4.1530 21 1 7.2909 3.6734 -1.7926 22 6 10.3301 2.4691 1.2056 23 6 11.6432 3.1199 0.7400 24 6 11.8578 1.8748 -0.1368 25 6 5.6743 -2.3214 0.0005 26 6 4.3110 -2.3913 -0.0001 27 6 3.5823 -1.1870 0.0003 28 6 2.1782 -1.1844 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6382 2.1388 -0.0004 33 1 4.0708 2.1980 0.0001 34 1 7.8964 1.0040 0.0019 35 1 10.2669 -0.3317 -0.8367 36 1 10.2597 -0.1713 0.9360 37 1 9.0492 3.1451 -1.0121 38 1 8.8463 2.6996 -5.5001 39 1 9.5042 3.1737 1.3035 40 1 10.4464 1.8278 2.0792 41 1 12.3825 3.2279 1.5336 42 1 11.4976 4.0365 0.1683 43 1 12.3920 1.0709 0.3697 44 1 12.2652 2.0996 -1.1225 45 1 6.2629 -3.2269 0.0009 46 1 3.8050 -3.3453 -0.0009 47 1 1.6336 -2.1170 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733718498.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:48 Heat of formation + Delta-G solvation = 52.696367 kcal Electronic energy + Delta-G solvation = -29012.630797 eV Core-core repulsion = 25161.148111 eV Total energy + Delta-G solvation = -3851.482685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.06495 -39.50971 -38.58464 -37.23875 -34.16547 -33.55676 -33.19665 -32.26184 -30.53366 -30.38622 -28.29029 -26.86662 -25.31027 -24.43613 -23.77795 -23.15125 -22.22375 -21.60040 -20.27803 -18.52822 -18.07015 -17.77435 -17.52367 -16.91715 -15.73525 -15.46168 -15.18808 -14.89003 -14.56763 -14.46458 -14.28119 -14.26142 -14.17371 -13.84883 -13.52575 -13.24616 -13.16304 -12.88784 -12.65679 -12.60673 -12.39364 -11.82097 -11.72789 -11.60329 -11.43962 -11.34118 -11.14946 -10.88622 -10.71205 -10.44429 -10.29286 -10.15947 -10.04779 -9.66481 -9.48908 -9.43025 -8.88863 -8.84599 -8.49576 -8.31746 -7.33029 -5.77990 -3.15705 0.11929 0.58003 1.82374 2.42858 3.33169 3.35806 3.38046 3.43977 3.48573 4.07510 4.10475 4.37899 4.51782 4.57303 4.58331 4.80620 4.84740 4.96300 5.03727 5.10205 5.12067 5.21311 5.26461 5.28746 5.32463 5.35933 5.44063 5.58148 5.61450 5.71354 5.80776 5.86922 5.93879 5.99072 6.07111 6.13073 6.14190 6.23464 6.26494 6.28742 6.35838 6.48457 6.65956 6.67598 6.80729 6.89672 7.02154 7.63118 7.98502 8.05481 8.40361 8.59520 9.17376 9.89209 10.07040 11.39886 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010808 B = 0.003636 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.118702 B = 7698.792717 C = 8887.675741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C -0.106 4.106 4 C -0.078 4.078 5 C 0.121 3.879 6 N -0.437 5.437 7 C 0.124 3.876 8 C 0.562 3.438 9 O -0.545 6.545 10 N -0.677 5.677 11 C 0.119 3.881 12 C 0.178 3.822 13 N -0.724 5.724 14 C -0.239 4.239 15 H 0.091 0.909 16 C 0.011 3.989 17 N -0.930 5.930 18 Si 0.877 3.123 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.273 1.273 22 C -0.146 4.146 23 C -0.130 4.130 24 C -0.147 4.147 25 C -0.122 4.122 26 C -0.068 4.068 27 C -0.084 4.084 28 C -0.106 4.106 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.411 0.589 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.364 0.636 38 H 0.259 0.741 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.151 0.849 46 H 0.144 0.856 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.358 -4.613 14.388 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.078 4.078 3 C -0.126 4.126 4 C -0.096 4.096 5 C -0.003 4.003 6 N -0.149 5.149 7 C -0.030 4.030 8 C 0.346 3.654 9 O -0.422 6.422 10 N -0.325 5.325 11 C -0.007 4.007 12 C 0.086 3.914 13 N -0.366 5.366 14 C -0.368 4.368 15 H 0.109 0.891 16 C -0.186 4.186 17 N -0.577 5.577 18 Si 0.708 3.292 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.199 1.199 22 C -0.184 4.184 23 C -0.168 4.168 24 C -0.187 4.187 25 C -0.142 4.142 26 C -0.094 4.094 27 C -0.086 4.086 28 C -0.125 4.125 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.248 0.752 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.197 0.803 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.168 0.832 46 H 0.162 0.838 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.418 -4.558 14.156 20.030 hybrid contribution -1.614 0.592 -0.125 1.723 sum -15.032 -3.967 14.031 20.942 Atomic orbital electron populations 1.20850 0.90771 1.02995 1.02645 1.19739 0.96485 0.93009 0.98530 1.20805 0.93923 0.97849 1.00021 1.20931 0.93596 0.97135 0.97964 1.18859 0.88977 0.92940 0.99500 1.67878 1.07369 1.29960 1.09672 1.21497 0.94789 0.89383 0.97323 1.17839 0.85445 0.84392 0.77753 1.90740 1.65867 1.34088 1.51544 1.45590 1.08152 1.08159 1.70625 1.21884 0.78895 0.99037 1.00855 1.20772 0.92819 0.89512 0.88345 1.42404 1.53469 1.38483 1.02246 1.18916 1.17657 1.19644 0.80608 0.89082 1.24640 0.99097 0.99677 0.95139 1.69691 1.44146 1.45484 0.98373 0.86650 0.82480 0.82509 0.77589 1.21226 1.21901 1.19921 1.23245 0.98422 0.99685 0.97080 1.22655 0.96772 0.98398 0.98941 1.23274 0.97410 0.97131 1.00886 1.21764 0.95041 0.98980 0.98423 1.21410 0.93695 0.97670 0.96659 1.18931 0.94780 0.94010 1.00918 1.20804 0.92112 0.98228 1.01315 0.90821 0.91366 0.91265 0.85169 0.84293 0.75228 0.90900 0.92290 0.80285 0.93092 0.91854 0.90053 0.92474 0.90178 0.90963 0.90201 0.83166 0.83828 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.98 36.01 0.36 -0.36 16 2 C -0.08 -0.72 5.85 -104.93 -0.61 -1.34 16 3 C -0.11 -1.08 9.58 -39.94 -0.38 -1.46 16 4 C -0.08 -1.00 9.99 -39.41 -0.39 -1.39 16 5 C 0.12 1.81 6.61 -84.85 -0.56 1.25 16 6 N -0.44 -7.48 9.47 -7.54 -0.07 -7.55 16 7 C 0.12 2.12 6.75 -82.95 -0.56 1.56 16 8 C 0.56 10.80 7.81 -12.13 -0.09 10.70 16 9 O -0.54 -11.39 16.28 5.37 0.09 -11.30 16 10 N -0.68 -12.83 5.37 -61.11 -0.33 -13.16 16 11 C 0.12 2.21 5.03 -4.04 -0.02 2.19 16 12 C 0.18 3.23 0.90 -131.01 -0.12 3.11 16 13 N -0.72 -16.01 4.38 -46.48 -0.20 -16.22 16 14 C -0.24 -6.44 9.73 -15.06 -0.15 -6.59 16 15 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 16 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 17 N -0.93 -29.01 13.97 55.49 0.78 -28.24 16 18 Si 0.88 21.73 27.68 -169.99 -4.71 17.03 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 21 H -0.27 -6.30 6.61 56.52 0.37 -5.92 16 22 C -0.15 -2.17 7.37 -25.92 -0.19 -2.36 16 23 C -0.13 -1.93 7.99 -25.91 -0.21 -2.14 16 24 C -0.15 -2.47 7.28 -25.92 -0.19 -2.66 16 25 C -0.12 -1.71 9.54 -39.44 -0.38 -2.09 16 26 C -0.07 -0.80 9.88 -39.25 -0.39 -1.18 16 27 C -0.08 -1.07 5.75 -106.71 -0.61 -1.68 16 28 C -0.11 -1.06 9.37 -39.52 -0.37 -1.43 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 31 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 34 H 0.41 7.84 7.43 -40.82 -0.30 7.54 16 35 H 0.07 1.55 8.13 -51.93 -0.42 1.12 16 36 H 0.06 0.98 7.95 -51.93 -0.41 0.56 16 37 H 0.36 7.98 5.80 -40.82 -0.24 7.74 16 38 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 39 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 40 H 0.08 1.06 7.97 -51.93 -0.41 0.65 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 44 H 0.08 1.54 7.82 -51.93 -0.41 1.13 16 45 H 0.15 1.95 7.60 -52.49 -0.40 1.55 16 46 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 47 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 390.95 15.07 5.89 5.89 Total: -1.00 -33.25 390.95 -10.33 -43.58 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -6.82 Total: 15.62 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -4.96 Total: -5.65 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: 0.17 Total: -65.16 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.25 -10.33 -43.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733718498.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.277 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds