Wall clock time and date at job start Tue Mar 31 2020 22:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39431 * 119.53895 * 2 1 4 4 C 1.35995 * 121.07954 * 179.97438 * 3 2 1 5 5 C 1.40824 * 119.73813 * 0.02562 * 4 3 2 6 6 N 1.33274 * 120.98084 * 180.25070 * 5 4 3 7 7 C 1.31873 * 121.29691 * 180.26029 * 6 5 4 8 8 C 1.48278 * 119.23935 * 179.76234 * 7 6 5 9 9 O 1.21499 * 119.99780 * 179.72593 * 8 7 6 10 10 N 1.34777 * 120.00257 * 359.72325 * 8 7 6 11 11 C 1.46497 * 120.00244 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47363 * 174.81240 * 11 10 8 13 13 N 1.46500 * 112.84702 * 311.21570 * 12 11 10 14 14 C 1.36942 * 119.99844 * 293.74020 * 13 12 11 15 15 H 1.07999 * 119.99896 * 354.42529 * 14 13 12 16 16 C 1.38817 * 119.99985 * 174.42361 * 14 13 12 17 17 N 1.31616 * 119.99943 * 180.02562 * 16 14 13 18 18 Si 1.86808 * 119.99852 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46893 * 90.00143 * 18 16 14 20 20 H 1.48495 * 109.46538 * 210.00137 * 18 16 14 21 21 H 1.48502 * 109.47004 * 329.99793 * 18 16 14 22 22 C 1.53785 * 113.69079 * 82.48012 * 12 11 10 23 23 C 1.53775 * 87.08041 * 139.99447 * 22 12 11 24 24 C 1.53773 * 113.61721 * 180.02562 * 12 11 10 25 25 C 1.40281 * 121.51947 * 359.47555 * 7 6 5 26 26 C 1.36507 * 119.81689 * 0.26626 * 25 7 6 27 27 C 1.40759 * 118.24508 * 359.97438 * 26 25 7 28 28 C 1.36134 * 119.53971 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47011 * 89.99723 * 1 2 3 30 30 H 1.08999 * 109.47306 * 209.99569 * 1 2 3 31 31 H 1.09002 * 109.47013 * 329.99615 * 1 2 3 32 32 H 1.07997 * 119.46263 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.13397 * 179.97438 * 4 3 2 34 34 H 0.97004 * 119.99496 * 359.97438 * 10 8 7 35 35 H 1.08999 * 109.46945 * 54.81036 * 11 10 8 36 36 H 1.08999 * 109.47107 * 294.81175 * 11 10 8 37 37 H 0.97008 * 120.00498 * 114.02466 * 13 12 11 38 38 H 0.96995 * 119.99915 * 179.97438 * 17 16 14 39 39 H 1.09004 * 113.61045 * 254.54764 * 22 12 11 40 40 H 1.08997 * 113.61304 * 25.44558 * 22 12 11 41 41 H 1.08998 * 113.61506 * 220.01988 * 23 22 12 42 42 H 1.08997 * 113.61590 * 89.11466 * 23 22 12 43 43 H 1.09004 * 113.61741 * 334.48175 * 24 12 11 44 44 H 1.09001 * 113.61468 * 105.38358 * 24 12 11 45 45 H 1.07998 * 120.09220 * 180.28149 * 25 7 6 46 46 H 1.07999 * 120.87561 * 179.97438 * 26 25 7 47 47 H 1.07995 * 120.17669 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.2131 0.0000 4 6 3.5539 1.2496 0.0005 5 6 4.2850 0.0461 0.0005 6 7 5.6177 0.0530 0.0060 7 6 6.3087 -1.0702 0.0009 8 6 7.7902 -1.0093 0.0021 9 8 8.4404 -2.0356 0.0025 10 7 8.4156 0.1846 0.0026 11 6 9.8793 0.2449 0.0031 12 6 10.3299 1.7012 -0.1268 13 7 9.6515 2.4118 -1.2135 14 6 9.8720 2.0446 -2.5142 15 1 10.6125 1.2930 -2.7450 16 6 9.1438 2.6383 -3.5361 17 7 9.3554 2.2850 -4.7861 18 14 7.8635 3.9388 -3.1368 19 1 8.5005 5.2802 -3.1476 20 1 6.7815 3.8964 -4.1530 21 1 7.2909 3.6734 -1.7926 22 6 10.3301 2.4691 1.2056 23 6 11.6432 3.1199 0.7400 24 6 11.8578 1.8748 -0.1368 25 6 5.6743 -2.3214 0.0005 26 6 4.3110 -2.3913 -0.0001 27 6 3.5823 -1.1870 0.0003 28 6 2.1782 -1.1844 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6382 2.1388 -0.0004 33 1 4.0708 2.1980 0.0001 34 1 7.8964 1.0040 0.0019 35 1 10.2669 -0.3317 -0.8367 36 1 10.2597 -0.1713 0.9360 37 1 9.0492 3.1451 -1.0121 38 1 8.8463 2.6996 -5.5001 39 1 9.5042 3.1737 1.3035 40 1 10.4464 1.8278 2.0792 41 1 12.3825 3.2279 1.5336 42 1 11.4976 4.0365 0.1683 43 1 12.3920 1.0709 0.3697 44 1 12.2652 2.0996 -1.1225 45 1 6.2629 -3.2269 0.0009 46 1 3.8050 -3.3453 -0.0009 47 1 1.6336 -2.1170 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733718498.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:47 Heat of formation + Delta-G solvation = 30.914847 kcal Electronic energy + Delta-G solvation = -29013.575314 eV Core-core repulsion = 25161.148111 eV Total energy + Delta-G solvation = -3852.427203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.09700 -40.90874 -39.95256 -38.24982 -35.58521 -35.23323 -34.56337 -33.13859 -32.54445 -31.31148 -29.52663 -27.93569 -26.69551 -25.66929 -25.27535 -24.34698 -23.17224 -22.88105 -21.66845 -19.99166 -19.70412 -19.15910 -18.92272 -17.85742 -17.09181 -16.66309 -16.59660 -16.34293 -16.14473 -15.76311 -15.41908 -15.33184 -15.21132 -15.03999 -14.74972 -14.52919 -14.30264 -14.18385 -14.05563 -13.89717 -13.24252 -13.17505 -13.11333 -13.01016 -12.51728 -12.48192 -12.40129 -12.27121 -12.21128 -11.82375 -11.69487 -11.67423 -11.59955 -11.43552 -10.97360 -10.87409 -10.60024 -10.07872 -9.74875 -9.32981 -9.21678 -8.01756 -5.35943 -0.87704 -0.38141 0.87661 1.33880 1.35373 1.37921 1.44165 2.06094 2.21183 2.46971 2.95384 3.04050 3.28751 3.42873 3.52551 3.64375 3.72379 3.75283 3.84752 3.92689 3.98488 4.02942 4.14360 4.16859 4.30969 4.39746 4.57677 4.64719 4.70931 4.73272 4.81896 4.88449 4.90056 4.90688 4.95885 4.99206 5.03893 5.12069 5.20331 5.28507 5.28900 5.35124 5.44164 5.45514 5.53129 5.64018 5.82865 5.83784 6.21914 6.38675 6.69573 7.07723 7.11002 7.82244 8.00719 9.19965 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010808 B = 0.003636 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.118702 B = 7698.792717 C = 8887.675741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.074 4.074 3 C -0.092 4.092 4 C -0.108 4.108 5 C 0.091 3.909 6 N -0.463 5.463 7 C 0.094 3.906 8 C 0.556 3.444 9 O -0.572 6.572 10 N -0.679 5.679 11 C 0.125 3.875 12 C 0.158 3.842 13 N -0.723 5.723 14 C -0.209 4.209 15 H 0.052 0.948 16 C -0.061 4.061 17 N -0.985 5.985 18 Si 0.946 3.054 19 H -0.277 1.277 20 H -0.305 1.305 21 H -0.247 1.247 22 C -0.128 4.128 23 C -0.119 4.119 24 C -0.148 4.148 25 C -0.139 4.139 26 C -0.048 4.048 27 C -0.094 4.094 28 C -0.104 4.104 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.158 0.842 33 H 0.133 0.867 34 H 0.410 0.590 35 H 0.034 0.966 36 H 0.084 0.916 37 H 0.368 0.632 38 H 0.254 0.746 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.044 0.956 45 H 0.154 0.846 46 H 0.188 0.812 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.825 -4.263 17.260 25.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.074 4.074 3 C -0.112 4.112 4 C -0.127 4.127 5 C -0.033 4.033 6 N -0.175 5.175 7 C -0.059 4.059 8 C 0.341 3.659 9 O -0.452 6.452 10 N -0.327 5.327 11 C -0.001 4.001 12 C 0.067 3.933 13 N -0.365 5.365 14 C -0.340 4.340 15 H 0.070 0.930 16 C -0.252 4.252 17 N -0.636 5.636 18 Si 0.774 3.226 19 H -0.203 1.203 20 H -0.233 1.233 21 H -0.171 1.171 22 C -0.165 4.165 23 C -0.156 4.156 24 C -0.188 4.188 25 C -0.160 4.160 26 C -0.074 4.074 27 C -0.096 4.096 28 C -0.122 4.122 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.176 0.824 33 H 0.151 0.849 34 H 0.247 0.753 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.202 0.798 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.115 0.885 44 H 0.063 0.937 45 H 0.171 0.829 46 H 0.206 0.794 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.865 -4.201 17.104 24.385 hybrid contribution -0.631 0.419 -0.985 1.243 sum -17.496 -3.782 16.118 24.088 Atomic orbital electron populations 1.20932 0.87966 1.04535 1.03619 1.20203 0.98440 0.92330 0.96477 1.21210 0.92944 0.99708 0.97324 1.21046 0.94863 0.96411 1.00354 1.19287 0.88482 0.94848 1.00638 1.67738 1.08874 1.30282 1.10652 1.21284 0.93447 0.90900 1.00266 1.18316 0.86798 0.83926 0.76825 1.90695 1.66902 1.34757 1.52867 1.45631 1.08160 1.08234 1.70714 1.21840 0.79001 0.98862 1.00425 1.21163 0.93434 0.89315 0.89399 1.42301 1.53899 1.38935 1.01415 1.18750 1.15227 1.17120 0.82860 0.93038 1.25408 1.02088 1.02846 0.94905 1.69887 1.46168 1.47892 0.99647 0.85530 0.79269 0.79693 0.78109 1.20332 1.23283 1.17120 1.23209 0.98573 0.99270 0.95461 1.22593 0.97558 0.96543 0.98933 1.23307 0.96047 0.99422 1.00027 1.21837 0.96390 0.97856 0.99941 1.21872 0.92549 0.99223 0.93743 1.19253 0.96293 0.93443 1.00657 1.21208 0.90794 1.00144 1.00103 0.89905 0.89696 0.90023 0.82433 0.84926 0.75314 0.94795 0.89807 0.79832 0.93695 0.91145 0.87257 0.89177 0.91515 0.88513 0.93698 0.82860 0.79434 0.81684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.98 71.24 0.71 -0.14 16 2 C -0.07 -1.10 5.85 -20.07 -0.12 -1.22 16 3 C -0.09 -1.63 9.58 22.04 0.21 -1.42 16 4 C -0.11 -2.71 9.99 22.38 0.22 -2.48 16 5 C 0.09 2.72 6.61 40.47 0.27 2.98 16 6 N -0.46 -16.34 9.47 -177.76 -1.68 -18.02 16 7 C 0.09 3.33 6.75 42.31 0.29 3.62 16 8 C 0.56 22.46 7.81 86.91 0.68 23.14 16 9 O -0.57 -25.21 16.28 -3.71 -0.06 -25.27 16 10 N -0.68 -26.72 5.37 -465.56 -2.50 -29.22 16 11 C 0.12 4.76 5.03 86.38 0.43 5.19 16 12 C 0.16 5.73 0.90 4.13 0.00 5.73 16 13 N -0.72 -32.50 4.38 -300.96 -1.32 -33.82 16 14 C -0.21 -11.79 9.73 84.03 0.82 -10.97 16 15 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 16 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 17 N -0.99 -64.68 13.97 21.65 0.30 -64.37 16 18 Si 0.95 46.12 27.68 68.60 1.90 48.02 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.31 -15.47 7.11 99.48 0.71 -14.77 16 21 H -0.25 -10.79 6.61 99.48 0.66 -10.13 16 22 C -0.13 -3.46 7.37 31.12 0.23 -3.23 16 23 C -0.12 -3.25 7.99 31.12 0.25 -3.00 16 24 C -0.15 -4.94 7.28 31.12 0.23 -4.71 16 25 C -0.14 -3.97 9.54 22.36 0.21 -3.75 16 26 C -0.05 -1.03 9.88 22.48 0.22 -0.81 16 27 C -0.09 -2.21 5.75 -21.22 -0.12 -2.34 16 28 C -0.10 -1.68 9.37 22.31 0.21 -1.47 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.41 8.07 -2.39 -0.02 0.39 16 31 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 32 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 34 H 0.41 16.10 7.43 -92.71 -0.69 15.41 16 35 H 0.03 1.54 8.13 -2.39 -0.02 1.52 16 36 H 0.08 2.75 7.95 -2.39 -0.02 2.73 16 37 H 0.37 15.92 5.80 -92.70 -0.54 15.38 16 38 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 39 H 0.07 1.86 8.09 -2.39 -0.02 1.84 16 40 H 0.11 2.42 7.97 -2.39 -0.02 2.40 16 41 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 42 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.10 2.73 8.10 -2.39 -0.02 2.71 16 44 H 0.04 1.80 7.82 -2.39 -0.02 1.78 16 45 H 0.15 4.09 7.60 -2.91 -0.02 4.07 16 46 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 47 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -79.24 390.95 1.57 -77.67 By element: Atomic # 1 Polarization: 43.35 SS G_CDS: -0.28 Total: 43.08 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 5.21 Total: 1.94 kcal Atomic # 7 Polarization: -140.23 SS G_CDS: -5.20 Total: -145.43 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.06 Total: -25.27 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.90 Total: 48.02 kcal Total: -79.24 1.57 -77.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733718498.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.581 kcal (2) G-P(sol) polarization free energy of solvation -79.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds