Wall clock time and date at job start Tue Mar 31 2020 22:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.45960 * 2 1 4 4 C 1.36933 * 120.00220 * 59.99519 * 3 2 1 5 5 H 1.07994 * 120.00185 * 0.02562 * 4 3 2 6 6 C 1.38816 * 119.99915 * 179.97438 * 4 3 2 7 7 N 1.31617 * 119.99765 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99735 * 0.02562 * 6 4 3 9 9 H 1.48510 * 109.47097 * 269.99669 * 8 6 4 10 10 H 1.48493 * 109.47652 * 29.99732 * 8 6 4 11 11 H 1.48503 * 109.46969 * 150.00313 * 8 6 4 12 12 C 1.53041 * 109.45912 * 119.97212 * 2 1 3 13 13 C 1.53161 * 109.32592 * 181.39076 * 12 2 1 14 14 N 1.46936 * 108.76419 * 305.34725 * 13 12 2 15 15 C 1.34774 * 120.63001 * 233.63217 * 14 13 12 16 16 O 1.21547 * 119.99450 * 174.22412 * 15 14 13 17 17 C 1.47895 * 120.00255 * 354.22524 * 15 14 13 18 18 C 1.38895 * 121.11530 * 306.07153 * 17 15 14 19 19 C 1.39264 * 119.58289 * 179.97438 * 18 17 15 20 20 N 1.30997 * 121.88355 * 0.02730 * 19 18 17 21 21 C 1.33537 * 121.82655 * 359.97324 * 20 19 18 22 22 C 1.40719 * 120.96905 * 180.02562 * 21 20 19 23 23 C 1.36064 * 119.73926 * 179.20095 * 22 21 20 24 24 C 1.39347 * 121.05205 * 0.80234 * 23 22 21 25 25 C 1.36254 * 120.84066 * 359.45622 * 24 23 22 26 26 C 1.40107 * 119.63973 * 359.97438 * 25 24 23 27 27 C 1.46923 * 118.73667 * 53.61583 * 14 13 12 28 28 C 1.53042 * 109.45852 * 240.02371 * 2 1 3 29 29 H 1.08995 * 109.47414 * 60.00180 * 1 2 3 30 30 H 1.09004 * 109.47057 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46805 * 299.99928 * 1 2 3 32 32 H 0.97003 * 119.99421 * 239.99910 * 3 2 1 33 33 H 0.96999 * 119.99515 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.49507 * 301.32101 * 12 2 1 35 35 H 1.08994 * 109.50578 * 61.41736 * 12 2 1 36 36 H 1.09008 * 109.59165 * 185.56868 * 13 12 2 37 37 H 1.08998 * 109.59830 * 65.13315 * 13 12 2 38 38 H 1.08000 * 120.20739 * 0.02562 * 18 17 15 39 39 H 1.07996 * 119.06171 * 180.02562 * 19 18 17 40 40 H 1.08004 * 120.12628 * 359.97438 * 22 21 20 41 41 H 1.07995 * 119.47017 * 180.26048 * 23 22 21 42 42 H 1.07996 * 119.58296 * 179.48103 * 24 23 22 43 43 H 1.07999 * 120.17938 * 180.02562 * 25 24 23 44 44 H 1.08996 * 109.58650 * 186.60586 * 27 14 13 45 45 H 1.09004 * 109.59118 * 66.17329 * 27 14 13 46 46 H 1.09000 * 109.49624 * 298.57604 * 28 2 1 47 47 H 1.08997 * 109.49785 * 58.64603 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6871 2.2245 1.0269 5 1 1.0665 1.8711 1.8371 6 6 2.1500 3.5332 1.0271 7 7 1.8322 4.3434 2.0145 8 14 3.2239 4.1441 -0.3739 9 1 4.6517 3.9016 -0.0452 10 1 2.8726 3.4174 -1.6202 11 1 3.0014 5.5993 -0.5698 12 6 2.0399 -0.7209 1.2500 13 6 3.5711 -0.6888 1.2646 14 7 4.0676 -1.2494 0.0004 15 6 4.9610 -2.2585 0.0006 16 8 5.2847 -2.7837 -1.0466 17 6 5.5474 -2.7267 1.2751 18 6 6.1724 -1.8427 2.1452 19 6 6.7132 -2.3182 3.3372 20 7 6.6521 -3.5842 3.6684 21 6 6.0669 -4.4905 2.8814 22 6 6.0110 -5.8459 3.2552 23 6 5.3943 -6.7456 2.4418 24 6 4.8284 -6.3503 1.2313 25 6 4.8680 -5.0475 0.8341 26 6 5.4848 -4.0921 1.6525 27 6 3.5714 -0.6891 -1.2640 28 6 2.0399 -0.7210 -1.2500 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.5757 1.6986 -0.7276 33 1 2.1554 5.2580 2.0144 34 1 1.6574 -0.2207 2.1398 35 1 1.6977 -1.7556 1.2384 36 1 3.9413 -1.2848 2.0989 37 1 3.9142 0.3406 1.3676 38 1 6.2377 -0.7931 1.8993 39 1 7.1969 -1.6234 4.0078 40 1 6.4450 -6.1688 4.1901 41 1 5.3502 -7.7840 2.7350 42 1 4.3520 -7.0857 0.6001 43 1 4.4257 -4.7528 -0.1060 44 1 3.9416 -1.2852 -2.0980 45 1 3.9145 0.3404 -1.3672 46 1 1.6976 -1.7558 -1.2381 47 1 1.6570 -0.2213 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733865204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:04 Heat of formation + Delta-G solvation = 24.643496 kcal Electronic energy + Delta-G solvation = -30077.069890 eV Core-core repulsion = 26224.370741 eV Total energy + Delta-G solvation = -3852.699149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.30957 -41.02197 -39.34571 -38.10646 -36.20031 -34.76352 -34.11768 -32.23592 -31.62353 -31.59666 -31.01461 -29.27551 -26.38423 -25.50298 -24.75339 -24.40741 -24.26102 -23.18624 -21.15641 -19.82563 -19.77010 -19.17326 -18.55341 -18.20644 -17.43792 -16.57774 -16.47264 -16.33806 -15.93505 -15.66715 -15.33899 -15.32970 -15.19207 -15.03176 -14.89630 -14.60919 -14.51115 -14.39297 -13.88129 -13.68415 -13.54843 -12.96174 -12.81562 -12.76568 -12.69480 -12.64521 -12.55759 -12.37066 -12.22135 -12.04037 -11.86536 -11.68919 -11.64798 -11.33416 -11.16290 -10.88792 -10.52117 -9.83705 -9.80474 -9.32197 -9.20660 -7.93199 -5.24853 -0.89390 -0.26135 0.68447 1.40237 1.41178 1.43354 1.48789 1.77741 1.94489 2.53447 3.01020 3.11485 3.28372 3.38626 3.53355 3.59993 3.65383 3.81912 3.85288 3.86519 4.06988 4.11242 4.17152 4.19687 4.32808 4.37857 4.46266 4.48588 4.55318 4.59503 4.72502 4.77267 4.81283 4.93506 4.98442 4.99003 5.03311 5.04860 5.10676 5.21819 5.25259 5.32401 5.42450 5.44341 5.52250 5.57341 5.83044 5.90040 6.20594 6.31015 6.77535 6.85185 7.17066 7.93096 8.11556 9.28324 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.003519 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.965387 B = 7954.319389 C = 8528.454654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.195 3.805 3 N -0.742 5.742 4 C -0.200 4.200 5 H 0.065 0.935 6 C -0.060 4.060 7 N -0.985 5.985 8 Si 0.936 3.064 9 H -0.283 1.283 10 H -0.254 1.254 11 H -0.307 1.307 12 C -0.128 4.128 13 C 0.120 3.880 14 N -0.587 5.587 15 C 0.563 3.437 16 O -0.564 6.564 17 C -0.078 4.078 18 C -0.138 4.138 19 C 0.130 3.870 20 N -0.477 5.477 21 C 0.106 3.894 22 C -0.103 4.103 23 C -0.090 4.090 24 C -0.103 4.103 25 C -0.116 4.116 26 C -0.086 4.086 27 C 0.113 3.887 28 C -0.123 4.123 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.362 0.638 33 H 0.253 0.747 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.155 0.845 39 H 0.198 0.802 40 H 0.154 0.846 41 H 0.169 0.831 42 H 0.157 0.843 43 H 0.121 0.879 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 -21.769 -1.211 22.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.106 3.894 3 N -0.386 5.386 4 C -0.331 4.331 5 H 0.083 0.917 6 C -0.251 4.251 7 N -0.637 5.637 8 Si 0.766 3.234 9 H -0.209 1.209 10 H -0.178 1.178 11 H -0.234 1.234 12 C -0.168 4.168 13 C -0.002 4.002 14 N -0.318 5.318 15 C 0.351 3.649 16 O -0.444 6.444 17 C -0.090 4.090 18 C -0.158 4.158 19 C -0.041 4.041 20 N -0.185 5.185 21 C -0.016 4.016 22 C -0.121 4.121 23 C -0.109 4.109 24 C -0.121 4.121 25 C -0.134 4.134 26 C -0.088 4.088 27 C -0.009 4.009 28 C -0.161 4.161 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.196 0.804 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.172 0.828 39 H 0.215 0.785 40 H 0.171 0.829 41 H 0.187 0.813 42 H 0.175 0.825 43 H 0.139 0.861 44 H 0.112 0.888 45 H 0.083 0.917 46 H 0.105 0.895 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.086 -22.351 -0.825 23.462 hybrid contribution 0.135 1.874 -1.365 2.322 sum 7.221 -20.478 -2.190 21.824 Atomic orbital electron populations 1.22112 0.96251 1.00856 1.01132 1.19783 0.92913 0.83271 0.93446 1.42909 1.61499 1.08796 1.25359 1.18862 1.23451 0.91398 0.99419 0.91722 1.25266 1.03017 0.96935 0.99923 1.69854 1.52371 1.06606 1.34847 0.85689 0.79453 0.76968 0.81313 1.20919 1.17842 1.23416 1.22192 0.94561 1.00088 0.99980 1.21750 0.95110 0.99084 0.84298 1.48090 1.41345 1.33658 1.08737 1.18304 0.79050 0.79228 0.88275 1.90747 1.62568 1.57546 1.33512 1.20356 0.99797 0.94197 0.94615 1.22637 0.97518 1.01248 0.94411 1.23412 0.94353 0.92139 0.94234 1.67877 1.15086 1.03071 1.32470 1.19224 0.96535 0.95391 0.90444 1.21138 0.99890 0.89565 1.01503 1.21360 0.95018 1.01494 0.93077 1.21374 0.98135 0.95509 0.97053 1.21143 0.99171 0.94044 0.99087 1.18772 1.00667 0.92751 0.96623 1.21662 0.94884 0.98628 0.85737 1.22077 0.94016 1.01715 0.98316 0.93217 0.91346 0.94638 0.80364 0.93821 0.91974 0.91072 0.89652 0.91237 0.82772 0.78547 0.82862 0.81337 0.82541 0.86082 0.88775 0.91746 0.89530 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 8.44 71.98 0.61 -3.96 16 2 C 0.20 6.31 0.74 3.63 0.00 6.31 16 3 N -0.74 -30.09 3.94 -303.22 -1.19 -31.28 16 4 C -0.20 -10.15 9.16 84.04 0.77 -9.38 16 5 H 0.06 3.62 6.93 -2.91 -0.02 3.60 16 6 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 7 N -0.99 -60.33 13.97 21.65 0.30 -60.03 16 8 Si 0.94 43.28 27.73 68.60 1.90 45.18 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.25 -10.54 6.52 99.48 0.65 -9.89 16 11 H -0.31 -14.87 7.11 99.48 0.71 -14.16 16 12 C -0.13 -3.98 4.70 30.66 0.14 -3.83 16 13 C 0.12 3.57 5.38 86.35 0.46 4.04 16 14 N -0.59 -17.08 2.97 -822.28 -2.44 -19.52 16 15 C 0.56 17.12 6.52 86.80 0.57 17.69 16 16 O -0.56 -19.73 15.24 -3.86 -0.06 -19.78 16 17 C -0.08 -2.16 4.65 -19.68 -0.09 -2.26 16 18 C -0.14 -3.25 7.90 22.67 0.18 -3.07 16 19 C 0.13 2.78 11.14 85.06 0.95 3.73 16 20 N -0.48 -11.75 10.30 -188.74 -1.94 -13.69 16 21 C 0.11 2.62 6.61 40.34 0.27 2.89 16 22 C -0.10 -1.92 9.99 22.37 0.22 -1.70 16 23 C -0.09 -1.30 9.94 22.03 0.22 -1.08 16 24 C -0.10 -1.75 9.96 22.07 0.22 -1.53 16 25 C -0.12 -2.77 9.26 22.26 0.21 -2.57 16 26 C -0.09 -2.28 5.76 -21.09 -0.12 -2.40 16 27 C 0.11 3.17 6.17 86.36 0.53 3.71 16 28 C -0.12 -3.25 4.96 30.67 0.15 -3.09 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.03 1.30 7.27 -2.39 -0.02 1.28 16 32 H 0.36 14.53 4.32 -92.71 -0.40 14.13 16 33 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 34 H 0.06 2.20 7.31 -2.38 -0.02 2.18 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.09 2.33 5.39 -2.38 -0.01 2.32 16 37 H 0.07 2.41 7.74 -2.39 -0.02 2.39 16 38 H 0.15 3.29 7.80 -2.91 -0.02 3.27 16 39 H 0.20 2.78 8.06 -2.91 -0.02 2.76 16 40 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 42 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 43 H 0.12 3.17 6.51 -2.91 -0.02 3.15 16 44 H 0.09 2.58 7.00 -2.39 -0.02 2.57 16 45 H 0.06 1.92 6.94 -2.38 -0.02 1.90 16 46 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -69.34 370.11 2.86 -66.48 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.54 Total: 32.02 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 5.75 Total: 0.63 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -5.28 Total: -124.52 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.06 Total: -19.78 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.90 Total: 45.18 kcal Total: -69.34 2.86 -66.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733865204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.122 kcal (2) G-P(sol) polarization free energy of solvation -69.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds