Wall clock time and date at job start Tue Mar 31 2020 22:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30821 * 119.23203 * 2 1 4 4 C 1.33795 * 121.72254 * 179.97438 * 3 2 1 5 5 C 1.40531 * 120.82073 * 179.97438 * 4 3 2 6 6 C 1.36137 * 119.81182 * 179.74603 * 5 4 3 7 7 C 1.39337 * 121.09186 * 0.25368 * 6 5 4 8 8 C 1.36141 * 120.84020 * 0.02562 * 7 6 5 9 9 C 1.40549 * 119.61932 * 359.97438 * 8 7 6 10 10 C 1.40488 * 121.23075 * 180.02562 * 9 8 7 11 11 C 1.39053 * 117.96072 * 179.21054 * 10 9 8 12 12 C 1.47763 * 120.26470 * 180.22905 * 11 10 9 13 13 O 1.21570 * 119.99937 * 186.32976 * 12 11 10 14 14 N 1.34772 * 120.00266 * 6.31918 * 12 11 10 15 15 C 1.46500 * 120.00017 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47321 * 180.02562 * 15 14 12 17 17 H 1.08995 * 109.47086 * 64.99196 * 16 15 14 18 18 N 1.46502 * 109.46436 * 305.00064 * 16 15 14 19 19 C 1.36942 * 119.99977 * 155.00267 * 18 16 15 20 20 H 1.08002 * 119.99396 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00067 * 179.97438 * 19 18 16 22 22 N 1.31618 * 120.00281 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99792 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46880 * 60.00000 * 23 21 19 25 25 H 1.48500 * 109.46977 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47255 * 300.00106 * 23 21 19 27 27 C 1.52997 * 109.47104 * 185.00026 * 16 15 14 28 28 C 1.52997 * 117.49778 * 248.74159 * 27 16 15 29 29 C 1.53006 * 117.49480 * 180.02562 * 27 16 15 30 30 H 1.09005 * 109.46733 * 96.69195 * 1 2 3 31 31 H 1.09003 * 109.47308 * 216.68641 * 1 2 3 32 32 H 1.08997 * 109.47545 * 336.69409 * 1 2 3 33 33 H 1.07998 * 120.09303 * 0.02562 * 5 4 3 34 34 H 1.07999 * 119.45269 * 180.28304 * 6 5 4 35 35 H 1.07999 * 119.58413 * 180.02562 * 7 6 5 36 36 H 1.08006 * 120.19288 * 179.97438 * 8 7 6 37 37 H 1.08000 * 121.01897 * 359.96113 * 10 9 8 38 38 H 0.96995 * 120.00129 * 0.02562 * 14 12 11 39 39 H 1.09004 * 109.47210 * 300.00038 * 15 14 12 40 40 H 1.08998 * 109.47231 * 60.00628 * 15 14 12 41 41 H 0.96996 * 120.00372 * 334.99729 * 18 16 15 42 42 H 0.96993 * 120.00302 * 179.97438 * 22 21 19 43 43 H 1.08999 * 115.55302 * 34.41578 * 27 16 15 44 44 H 1.09000 * 117.49966 * 359.97438 * 28 27 16 45 45 H 1.09000 * 117.49781 * 145.02459 * 28 27 16 46 46 H 1.08994 * 117.49636 * 214.97413 * 29 27 16 47 47 H 1.08996 * 117.49793 * 0.02562 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4825 1.1997 0.0005 5 6 4.1494 2.4367 0.0000 6 6 5.5103 2.4719 0.0057 7 6 6.2605 1.2978 0.0069 8 6 5.6512 0.0803 0.0018 9 6 4.2477 0.0059 -0.0042 10 6 3.5839 -1.2322 -0.0090 11 6 2.1934 -1.2266 0.0021 12 6 1.4435 -2.4998 0.0028 13 8 0.2325 -2.4920 -0.1037 14 7 2.1020 -3.6697 0.1211 15 6 1.3584 -4.9320 0.1212 16 6 2.3360 -6.0998 0.2681 17 1 2.8185 -6.0491 1.2441 18 7 3.3527 -6.0206 -0.7838 19 6 4.5811 -6.5950 -0.5933 20 1 4.8006 -7.1060 0.3325 21 6 5.5442 -6.5205 -1.5902 22 7 5.2766 -5.8982 -2.7187 23 14 7.2202 -7.3034 -1.3300 24 1 7.0551 -8.7610 -1.0989 25 1 8.0610 -7.0848 -2.5344 26 1 7.8770 -6.6864 -0.1498 27 6 1.5747 -7.4210 0.1433 28 6 1.4485 -8.2850 1.3997 29 6 2.3817 -8.7154 0.2636 30 1 -0.3633 -0.1198 -1.0207 31 1 -0.3634 -0.8241 0.6140 32 1 -0.3634 0.9438 0.4066 33 1 3.5839 3.3568 -0.0005 34 1 6.0168 3.4258 0.0099 35 1 7.3390 1.3541 0.0120 36 1 6.2429 -0.8232 0.0024 37 1 4.1366 -2.1601 -0.0089 38 1 3.0681 -3.6760 0.2062 39 1 0.6558 -4.9398 0.9546 40 1 0.8114 -5.0315 -0.8163 41 1 3.1557 -5.5615 -1.6152 42 1 5.9497 -5.8459 -3.4151 43 1 0.7338 -7.4154 -0.5502 44 1 1.9082 -7.9123 2.3150 45 1 0.5247 -8.8481 1.5325 46 1 2.0708 -9.5611 -0.3496 47 1 3.4548 -8.6256 0.4321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752460937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:17 Heat of formation + Delta-G solvation = 55.835533 kcal Electronic energy + Delta-G solvation = -28780.408371 eV Core-core repulsion = 24929.061810 eV Total energy + Delta-G solvation = -3851.346561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.08149 -39.39117 -37.71376 -37.01266 -34.85459 -33.83481 -33.29593 -31.84337 -31.16749 -30.19905 -28.23101 -27.56582 -24.90611 -23.70160 -22.69754 -22.48026 -22.00992 -21.73985 -20.56329 -19.71553 -18.44864 -17.71034 -17.18025 -16.75306 -15.68881 -15.53406 -15.40345 -15.05155 -14.64031 -14.59045 -14.49737 -14.28350 -13.80359 -13.66655 -13.47308 -13.22252 -13.05229 -12.93208 -12.84560 -12.21305 -12.00599 -11.83717 -11.55905 -11.42318 -11.38696 -11.21836 -10.94061 -10.91311 -10.78372 -10.57441 -10.22209 -9.99915 -9.86991 -9.64068 -9.40263 -9.26745 -9.05111 -8.90655 -8.60812 -8.34540 -7.13343 -5.89203 -3.19422 0.15062 0.58654 1.78688 2.55156 3.31250 3.33136 3.37108 3.39782 3.40742 4.02814 4.12673 4.35312 4.47652 4.52914 4.55547 4.65282 4.68764 5.00727 5.04975 5.14544 5.16273 5.32361 5.40985 5.45754 5.54529 5.59421 5.67031 5.69018 5.77529 5.80813 5.83970 5.86733 5.94637 5.98726 6.01743 6.12321 6.18962 6.24553 6.29160 6.34008 6.46667 6.50615 6.54527 6.71119 6.73042 6.81800 6.92400 7.57286 7.75965 7.88129 8.27332 8.41464 9.39664 9.93254 10.29528 11.32223 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009626 B = 0.003621 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.966669 B = 7731.544067 C =10166.669661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.213 3.787 3 N -0.488 5.488 4 C 0.149 3.851 5 C -0.106 4.106 6 C -0.090 4.090 7 C -0.130 4.130 8 C -0.078 4.078 9 C -0.119 4.119 10 C -0.006 4.006 11 C -0.187 4.187 12 C 0.560 3.440 13 O -0.539 6.539 14 N -0.706 5.706 15 C 0.119 3.881 16 C 0.192 3.808 17 H 0.055 0.945 18 N -0.717 5.717 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.007 4.007 22 N -0.928 5.928 23 Si 0.902 3.098 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.159 4.159 28 C -0.196 4.196 29 C -0.156 4.156 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.136 0.864 37 H 0.151 0.849 38 H 0.408 0.592 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.875 11.654 7.482 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.060 3.940 3 N -0.197 5.197 4 C 0.028 3.972 5 C -0.124 4.124 6 C -0.110 4.110 7 C -0.148 4.148 8 C -0.097 4.097 9 C -0.121 4.121 10 C -0.032 4.032 11 C -0.192 4.192 12 C 0.346 3.654 13 O -0.419 6.419 14 N -0.357 5.357 15 C -0.005 4.005 16 C 0.082 3.918 17 H 0.073 0.927 18 N -0.358 5.358 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.204 4.204 22 N -0.576 5.576 23 Si 0.733 3.267 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.181 4.181 28 C -0.234 4.234 29 C -0.193 4.193 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.154 0.846 37 H 0.169 0.831 38 H 0.246 0.754 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.935 12.410 7.442 14.996 hybrid contribution 2.011 -1.312 -0.394 2.433 sum -1.924 11.098 7.048 13.287 Atomic orbital electron populations 1.21102 0.87396 1.03732 1.04414 1.21572 0.97592 0.86267 0.88619 1.67894 1.08189 1.28127 1.15471 1.19001 0.89196 0.92993 0.96021 1.20775 0.94178 0.96302 1.01191 1.20959 0.93692 0.98752 0.97597 1.20917 1.00460 0.92241 1.01135 1.21169 0.92592 0.98973 0.96933 1.18789 0.95017 0.93580 1.04707 1.22195 0.93385 0.98128 0.89481 1.20840 0.94052 0.95421 1.08861 1.17899 0.87086 0.83336 0.77057 1.90697 1.13420 1.87115 1.50667 1.45902 1.11803 1.05369 1.72607 1.21651 0.94535 0.82373 1.01955 1.20066 0.88609 0.89189 0.93958 0.92673 1.42465 1.10554 1.66193 1.16630 1.19114 0.89187 1.28602 1.00246 0.91165 1.24709 0.98342 1.01012 0.96294 1.69643 1.34465 1.47128 1.06321 0.86362 0.84308 0.79255 0.76799 1.21219 1.21736 1.21293 1.23016 1.01511 0.94467 0.99068 1.22983 1.01572 1.05482 0.93363 1.22799 0.98870 0.97321 1.00304 0.89853 0.87621 0.91489 0.84735 0.85314 0.85363 0.84592 0.83110 0.75448 0.91316 0.91467 0.78039 0.93362 0.89092 0.89542 0.90053 0.90209 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 8.83 36.00 0.32 -1.15 16 2 C 0.21 3.21 6.82 -82.15 -0.56 2.65 16 3 N -0.49 -7.37 10.20 -6.94 -0.07 -7.44 16 4 C 0.15 2.11 6.61 -84.79 -0.56 1.55 16 5 C -0.11 -1.21 9.97 -39.47 -0.39 -1.60 16 6 C -0.09 -0.85 9.94 -39.93 -0.40 -1.24 16 7 C -0.13 -1.27 9.96 -39.93 -0.40 -1.67 16 8 C -0.08 -0.90 9.77 -39.46 -0.39 -1.29 16 9 C -0.12 -1.63 5.74 -106.82 -0.61 -2.25 16 10 C -0.01 -0.08 9.38 -38.43 -0.36 -0.44 16 11 C -0.19 -2.84 5.89 -104.83 -0.62 -3.45 16 12 C 0.56 9.11 7.70 -12.37 -0.10 9.01 16 13 O -0.54 -9.58 13.29 5.30 0.07 -9.51 16 14 N -0.71 -11.19 5.34 -61.27 -0.33 -11.52 16 15 C 0.12 1.91 5.21 -4.04 -0.02 1.89 16 16 C 0.19 3.37 2.70 -67.93 -0.18 3.19 16 17 H 0.06 0.98 7.84 -51.93 -0.41 0.57 16 18 N -0.72 -15.59 4.54 -53.42 -0.24 -15.83 16 19 C -0.24 -5.85 8.63 -15.06 -0.13 -5.98 16 20 H 0.07 1.67 6.91 -52.49 -0.36 1.31 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 22 N -0.93 -25.82 13.06 55.49 0.72 -25.09 16 23 Si 0.90 20.77 29.55 -169.99 -5.02 15.74 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 27 C -0.16 -2.64 5.35 -90.62 -0.49 -3.13 16 28 C -0.20 -2.85 10.19 -26.64 -0.27 -3.12 16 29 C -0.16 -2.66 9.79 -26.63 -0.26 -2.92 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.11 1.50 5.79 -51.93 -0.30 1.19 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.14 1.41 8.06 -52.48 -0.42 0.98 16 37 H 0.15 1.99 6.52 -52.49 -0.34 1.65 16 38 H 0.41 6.47 6.25 -40.82 -0.26 6.22 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.39 9.25 7.80 -40.82 -0.32 8.93 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 44 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.10 2.01 6.23 -51.93 -0.32 1.68 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -28.92 388.16 -11.04 -39.96 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -6.51 Total: 18.07 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -5.51 Total: -10.22 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.08 Total: -59.88 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.92 -11.04 -39.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752460937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.792 kcal (2) G-P(sol) polarization free energy of solvation -28.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds