Wall clock time and date at job start Tue Mar 31 2020 22:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30821 * 119.23203 * 2 1 4 4 C 1.33795 * 121.72254 * 179.97438 * 3 2 1 5 5 C 1.40531 * 120.82073 * 179.97438 * 4 3 2 6 6 C 1.36137 * 119.81182 * 179.74603 * 5 4 3 7 7 C 1.39337 * 121.09186 * 0.25368 * 6 5 4 8 8 C 1.36141 * 120.84020 * 0.02562 * 7 6 5 9 9 C 1.40549 * 119.61932 * 359.97438 * 8 7 6 10 10 C 1.40488 * 121.23075 * 180.02562 * 9 8 7 11 11 C 1.39053 * 117.96072 * 179.21054 * 10 9 8 12 12 C 1.47763 * 120.26470 * 180.22905 * 11 10 9 13 13 O 1.21570 * 119.99937 * 186.32976 * 12 11 10 14 14 N 1.34772 * 120.00266 * 6.31918 * 12 11 10 15 15 C 1.46500 * 120.00017 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47321 * 180.02562 * 15 14 12 17 17 H 1.08995 * 109.47086 * 64.99196 * 16 15 14 18 18 N 1.46502 * 109.46436 * 305.00064 * 16 15 14 19 19 C 1.36942 * 119.99977 * 155.00267 * 18 16 15 20 20 H 1.08002 * 119.99396 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00067 * 179.97438 * 19 18 16 22 22 N 1.31618 * 120.00281 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99792 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46880 * 60.00000 * 23 21 19 25 25 H 1.48500 * 109.46977 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47255 * 300.00106 * 23 21 19 27 27 C 1.52997 * 109.47104 * 185.00026 * 16 15 14 28 28 C 1.52997 * 117.49778 * 248.74159 * 27 16 15 29 29 C 1.53006 * 117.49480 * 180.02562 * 27 16 15 30 30 H 1.09005 * 109.46733 * 96.69195 * 1 2 3 31 31 H 1.09003 * 109.47308 * 216.68641 * 1 2 3 32 32 H 1.08997 * 109.47545 * 336.69409 * 1 2 3 33 33 H 1.07998 * 120.09303 * 0.02562 * 5 4 3 34 34 H 1.07999 * 119.45269 * 180.28304 * 6 5 4 35 35 H 1.07999 * 119.58413 * 180.02562 * 7 6 5 36 36 H 1.08006 * 120.19288 * 179.97438 * 8 7 6 37 37 H 1.08000 * 121.01897 * 359.96113 * 10 9 8 38 38 H 0.96995 * 120.00129 * 0.02562 * 14 12 11 39 39 H 1.09004 * 109.47210 * 300.00038 * 15 14 12 40 40 H 1.08998 * 109.47231 * 60.00628 * 15 14 12 41 41 H 0.96996 * 120.00372 * 334.99729 * 18 16 15 42 42 H 0.96993 * 120.00302 * 179.97438 * 22 21 19 43 43 H 1.08999 * 115.55302 * 34.41578 * 27 16 15 44 44 H 1.09000 * 117.49966 * 359.97438 * 28 27 16 45 45 H 1.09000 * 117.49781 * 145.02459 * 28 27 16 46 46 H 1.08994 * 117.49636 * 214.97413 * 29 27 16 47 47 H 1.08996 * 117.49793 * 0.02562 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4825 1.1997 0.0005 5 6 4.1494 2.4367 0.0000 6 6 5.5103 2.4719 0.0057 7 6 6.2605 1.2978 0.0069 8 6 5.6512 0.0803 0.0018 9 6 4.2477 0.0059 -0.0042 10 6 3.5839 -1.2322 -0.0090 11 6 2.1934 -1.2266 0.0021 12 6 1.4435 -2.4998 0.0028 13 8 0.2325 -2.4920 -0.1037 14 7 2.1020 -3.6697 0.1211 15 6 1.3584 -4.9320 0.1212 16 6 2.3360 -6.0998 0.2681 17 1 2.8185 -6.0491 1.2441 18 7 3.3527 -6.0206 -0.7838 19 6 4.5811 -6.5950 -0.5933 20 1 4.8006 -7.1060 0.3325 21 6 5.5442 -6.5205 -1.5902 22 7 5.2766 -5.8982 -2.7187 23 14 7.2202 -7.3034 -1.3300 24 1 7.0551 -8.7610 -1.0989 25 1 8.0610 -7.0848 -2.5344 26 1 7.8770 -6.6864 -0.1498 27 6 1.5747 -7.4210 0.1433 28 6 1.4485 -8.2850 1.3997 29 6 2.3817 -8.7154 0.2636 30 1 -0.3633 -0.1198 -1.0207 31 1 -0.3634 -0.8241 0.6140 32 1 -0.3634 0.9438 0.4066 33 1 3.5839 3.3568 -0.0005 34 1 6.0168 3.4258 0.0099 35 1 7.3390 1.3541 0.0120 36 1 6.2429 -0.8232 0.0024 37 1 4.1366 -2.1601 -0.0089 38 1 3.0681 -3.6760 0.2062 39 1 0.6558 -4.9398 0.9546 40 1 0.8114 -5.0315 -0.8163 41 1 3.1557 -5.5615 -1.6152 42 1 5.9497 -5.8459 -3.4151 43 1 0.7338 -7.4154 -0.5502 44 1 1.9082 -7.9123 2.3150 45 1 0.5247 -8.8481 1.5325 46 1 2.0708 -9.5611 -0.3496 47 1 3.4548 -8.6256 0.4321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752460937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:16 Heat of formation + Delta-G solvation = 39.949741 kcal Electronic energy + Delta-G solvation = -28781.097231 eV Core-core repulsion = 24929.061810 eV Total energy + Delta-G solvation = -3852.035421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13557 -40.60666 -39.06695 -38.04163 -36.19274 -35.32007 -34.58711 -32.85710 -32.73851 -31.32120 -29.64403 -28.68085 -26.12334 -25.33752 -23.96642 -23.54685 -23.04551 -22.98147 -21.84443 -21.08357 -19.65983 -19.10016 -18.54456 -17.85780 -16.92943 -16.70698 -16.70422 -16.46345 -16.01128 -15.72222 -15.59366 -15.49344 -15.11379 -15.07192 -14.81514 -14.41431 -14.36296 -13.98662 -13.97294 -13.63143 -13.11021 -12.95869 -12.85793 -12.71320 -12.65311 -12.42960 -12.41862 -12.34587 -12.24519 -12.02118 -11.71493 -11.62357 -11.07057 -10.98741 -10.90793 -10.77462 -10.47156 -10.12330 -9.70758 -9.28047 -8.99087 -7.87411 -5.15242 -0.86067 -0.42218 0.81255 1.50325 1.50703 1.52437 1.57146 2.10426 2.19199 2.58650 3.01865 3.08823 3.13359 3.44801 3.49091 3.50938 3.59779 3.78230 3.81091 4.00340 4.04410 4.19036 4.20030 4.30627 4.36835 4.38863 4.40707 4.57384 4.58752 4.66200 4.69085 4.77233 4.84707 4.87095 4.91813 4.93223 5.03642 5.13744 5.17355 5.25770 5.34486 5.41733 5.43878 5.46163 5.49442 5.54505 5.63112 5.85099 6.31645 6.47401 6.79290 7.12247 7.40478 8.11018 8.36819 9.34841 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009626 B = 0.003621 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.966669 B = 7731.544067 C =10166.669661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.196 3.804 3 N -0.498 5.498 4 C 0.127 3.873 5 C -0.120 4.120 6 C -0.074 4.074 7 C -0.119 4.119 8 C -0.095 4.095 9 C -0.134 4.134 10 C -0.005 4.005 11 C -0.204 4.204 12 C 0.561 3.439 13 O -0.558 6.558 14 N -0.705 5.705 15 C 0.128 3.872 16 C 0.197 3.803 17 H 0.058 0.942 18 N -0.723 5.723 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.065 4.065 22 N -0.965 5.965 23 Si 0.956 3.044 24 H -0.285 1.285 25 H -0.304 1.304 26 H -0.277 1.277 27 C -0.172 4.172 28 C -0.162 4.162 29 C -0.175 4.175 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.148 0.852 34 H 0.168 0.832 35 H 0.161 0.839 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.408 0.592 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.373 0.627 42 H 0.247 0.753 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.084 0.916 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.949 12.514 9.033 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.043 3.957 3 N -0.208 5.208 4 C 0.005 3.995 5 C -0.139 4.139 6 C -0.093 4.093 7 C -0.136 4.136 8 C -0.114 4.114 9 C -0.136 4.136 10 C -0.032 4.032 11 C -0.209 4.209 12 C 0.348 3.652 13 O -0.439 6.439 14 N -0.355 5.355 15 C 0.004 3.996 16 C 0.088 3.912 17 H 0.076 0.924 18 N -0.363 5.363 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.258 4.258 22 N -0.616 5.616 23 Si 0.787 3.213 24 H -0.212 1.212 25 H -0.231 1.231 26 H -0.203 1.203 27 C -0.193 4.193 28 C -0.200 4.200 29 C -0.212 4.212 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.166 0.834 34 H 0.186 0.814 35 H 0.178 0.822 36 H 0.162 0.838 37 H 0.171 0.829 38 H 0.245 0.755 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.205 0.795 42 H 0.056 0.944 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.124 0.876 46 H 0.103 0.897 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.027 13.253 9.050 16.331 hybrid contribution 1.776 -1.502 -0.808 2.462 sum -1.252 11.751 8.242 14.408 Atomic orbital electron populations 1.21010 0.86701 1.04022 1.04071 1.21760 0.98242 0.86362 0.89336 1.67900 1.09005 1.28017 1.15842 1.19459 0.89076 0.94326 0.96590 1.21051 0.95306 0.95725 1.01774 1.21429 0.92891 1.00357 0.94639 1.21372 1.02195 0.91484 0.98579 1.21381 0.91710 1.00470 0.97818 1.18995 0.96187 0.93200 1.05232 1.22287 0.93114 0.98730 0.89026 1.20756 0.94470 0.94940 1.10762 1.18063 0.86921 0.83697 0.76482 1.90680 1.14154 1.87423 1.51634 1.45871 1.11719 1.05338 1.72600 1.21556 0.94216 0.81835 1.02023 1.20159 0.88078 0.90407 0.92575 0.92370 1.42564 1.10906 1.65819 1.17003 1.19407 0.89725 1.26320 0.99721 0.90544 1.25305 1.01292 1.02651 0.96519 1.69792 1.34983 1.49638 1.07195 0.85471 0.81129 0.78417 0.76277 1.21185 1.23059 1.20276 1.22918 1.01587 0.93537 1.01274 1.23052 1.01441 1.03118 0.92347 1.22748 0.97957 0.97779 1.02716 0.90165 0.88567 0.90114 0.83417 0.81415 0.82151 0.83810 0.82889 0.75491 0.89652 0.92597 0.79529 0.94401 0.88769 0.88561 0.87579 0.89719 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.78 8.83 71.23 0.63 -2.15 16 2 C 0.20 6.09 6.82 43.27 0.30 6.38 16 3 N -0.50 -15.22 10.20 -175.86 -1.79 -17.02 16 4 C 0.13 3.54 6.61 40.28 0.27 3.80 16 5 C -0.12 -2.51 9.97 22.34 0.22 -2.29 16 6 C -0.07 -1.13 9.94 22.05 0.22 -0.91 16 7 C -0.12 -1.94 9.96 22.05 0.22 -1.72 16 8 C -0.10 -2.08 9.77 22.35 0.22 -1.86 16 9 C -0.13 -3.67 5.74 -21.29 -0.12 -3.79 16 10 C -0.01 -0.15 9.38 23.01 0.22 0.06 16 11 C -0.20 -6.43 5.89 -20.00 -0.12 -6.54 16 12 C 0.56 18.76 7.70 86.76 0.67 19.43 16 13 O -0.56 -20.29 13.29 -3.94 -0.05 -20.35 16 14 N -0.70 -22.70 5.34 -466.04 -2.49 -25.18 16 15 C 0.13 4.06 5.21 86.38 0.45 4.51 16 16 C 0.20 6.77 2.70 44.99 0.12 6.89 16 17 H 0.06 1.99 7.84 -2.39 -0.02 1.97 16 18 N -0.72 -31.65 4.54 -322.94 -1.47 -33.12 16 19 C -0.22 -10.70 8.63 84.03 0.72 -9.97 16 20 H 0.08 3.59 6.91 -2.91 -0.02 3.57 16 21 C -0.07 -3.41 5.50 84.86 0.47 -2.94 16 22 N -0.97 -54.96 13.06 21.65 0.28 -54.68 16 23 Si 0.96 43.03 29.55 68.60 2.03 45.06 16 24 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 26 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 27 C -0.17 -5.48 5.35 -10.79 -0.06 -5.54 16 28 C -0.16 -4.25 10.19 30.66 0.31 -3.94 16 29 C -0.17 -5.76 9.79 30.66 0.30 -5.46 16 30 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.10 2.82 5.79 -2.39 -0.01 2.80 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 35 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.15 4.21 6.52 -2.91 -0.02 4.19 16 38 H 0.41 13.21 6.25 -92.71 -0.58 12.63 16 39 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.37 18.30 7.80 -92.71 -0.72 17.57 16 42 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 43 H 0.09 2.96 8.11 -2.39 -0.02 2.94 16 44 H 0.10 2.37 8.05 -2.39 -0.02 2.35 16 45 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 47 H 0.08 3.06 6.23 -2.39 -0.01 3.04 16 Total: -1.00 -63.25 388.16 1.26 -61.99 By element: Atomic # 1 Polarization: 49.62 SS G_CDS: -0.29 Total: 49.33 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 5.03 Total: -6.03 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -5.46 Total: -130.00 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -63.25 1.26 -61.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752460937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.941 kcal (2) G-P(sol) polarization free energy of solvation -63.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds