Wall clock time and date at job start Tue Mar 31 2020 22:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36611 * 120.92173 * 2 1 4 4 C 1.39272 * 119.90576 * 180.02562 * 3 2 1 5 5 N 1.31142 * 121.77140 * 0.02562 * 4 3 2 6 6 C 1.33613 * 121.39491 * 359.95791 * 5 4 3 7 7 C 1.40760 * 120.83447 * 180.02562 * 6 5 4 8 8 C 1.35692 * 120.11554 * 180.02562 * 7 6 5 9 9 C 1.40631 * 120.92436 * 0.02562 * 8 7 6 10 10 C 1.47774 * 119.80537 * 179.97438 * 9 8 7 11 11 O 1.21563 * 119.99351 * 7.42484 * 10 9 8 12 12 N 1.34774 * 119.99954 * 187.42870 * 10 9 8 13 13 C 1.47018 * 125.65203 * 354.26062 * 12 10 9 14 14 C 1.54318 * 107.27088 * 181.09619 * 13 12 10 15 15 C 1.55150 * 102.94336 * 22.19559 * 14 13 12 16 16 H 1.08998 * 111.03726 * 82.58468 * 15 14 13 17 17 C 1.53001 * 111.00665 * 206.41951 * 15 14 13 18 18 N 1.46504 * 109.47325 * 178.64893 * 17 15 14 19 19 C 1.36937 * 119.99714 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00081 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99736 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00117 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00228 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46824 * 269.99545 * 23 21 19 25 25 H 1.48498 * 109.46990 * 29.98876 * 23 21 19 26 26 H 1.48499 * 109.47222 * 149.99926 * 23 21 19 27 27 C 1.47427 * 125.64551 * 174.30822 * 12 10 9 28 28 C 1.38546 * 120.39908 * 0.27098 * 9 8 7 29 29 C 1.40196 * 119.39786 * 359.46324 * 28 9 8 30 30 H 1.08999 * 109.47471 * 269.97761 * 1 2 3 31 31 H 1.09004 * 109.47311 * 29.97873 * 1 2 3 32 32 H 1.09002 * 109.47146 * 149.97735 * 1 2 3 33 33 H 1.07999 * 120.04765 * 359.97438 * 3 2 1 34 34 H 1.08007 * 119.11291 * 180.02562 * 4 3 2 35 35 H 1.07999 * 119.94047 * 0.04327 * 7 6 5 36 36 H 1.08003 * 119.53963 * 180.02562 * 8 7 6 37 37 H 1.08997 * 109.88309 * 300.51929 * 13 12 10 38 38 H 1.09005 * 109.87867 * 61.52877 * 13 12 10 39 39 H 1.09003 * 110.72287 * 263.83009 * 14 13 12 40 40 H 1.09002 * 110.71833 * 140.56041 * 14 13 12 41 41 H 1.09003 * 109.47165 * 58.65046 * 17 15 14 42 42 H 1.09001 * 109.47138 * 298.65372 * 17 15 14 43 43 H 0.96998 * 119.99659 * 359.97438 * 18 17 15 44 44 H 0.96996 * 120.00305 * 180.02562 * 22 21 19 45 45 H 1.09003 * 110.36692 * 36.99005 * 27 12 10 46 46 H 1.09004 * 110.45802 * 274.71785 * 27 12 10 47 47 H 1.08004 * 120.30458 * 179.70551 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2089 1.1719 0.0000 4 6 3.6014 1.1473 -0.0005 5 7 4.2721 0.0203 -0.0016 6 6 3.6479 -1.1611 -0.0013 7 6 4.3795 -2.3636 -0.0018 8 6 3.7306 -3.5553 -0.0021 9 6 2.3255 -3.6132 -0.0023 10 6 1.6443 -4.9245 -0.0031 11 8 2.2906 -5.9451 0.1324 12 7 0.3066 -4.9889 -0.1543 13 6 -0.6061 -3.8376 -0.2081 14 6 -2.0372 -4.3942 -0.3615 15 6 -1.9074 -5.8413 0.1827 16 1 -1.9742 -5.8577 1.2705 17 6 -2.9603 -6.7588 -0.4422 18 7 -2.7872 -8.1206 0.0695 19 6 -3.6212 -9.1216 -0.3520 20 1 -4.4068 -8.9071 -1.0613 21 6 -3.4575 -10.4117 0.1333 22 7 -2.5003 -10.6730 0.9983 23 14 -4.5946 -11.7775 -0.4421 24 1 -5.7720 -11.8541 0.4596 25 1 -5.0493 -11.4924 -1.8267 26 1 -3.8665 -13.0715 -0.4165 27 6 -0.4839 -6.2257 -0.2920 28 6 1.5759 -2.4480 -0.0080 29 6 2.2307 -1.2084 -0.0020 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6848 2.1162 -0.0004 34 1 4.1436 2.0814 -0.0001 35 1 5.4592 -2.3377 -0.0018 36 1 4.3012 -4.4723 -0.0021 37 1 -0.5295 -3.2605 0.7134 38 1 -0.3575 -3.2072 -1.0619 39 1 -2.3379 -4.4017 -1.4092 40 1 -2.7414 -3.8181 0.2387 41 1 -2.8437 -6.7604 -1.5260 42 1 -3.9560 -6.3976 -0.1846 43 1 -2.0814 -8.3132 0.7064 44 1 -2.3857 -11.5746 1.3372 45 1 -0.0721 -7.0117 0.3410 46 1 -0.5057 -6.5500 -1.3325 47 1 0.4969 -2.4942 -0.0129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752941491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:07 Heat of formation + Delta-G solvation = 54.838274 kcal Electronic energy + Delta-G solvation = -28517.754004 eV Core-core repulsion = 24666.364198 eV Total energy + Delta-G solvation = -3851.389805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.45110 -40.13507 -37.91332 -36.86024 -35.24828 -34.67814 -32.53064 -31.06857 -30.81730 -30.45128 -28.93452 -28.15007 -25.92159 -24.87734 -23.81666 -23.39735 -22.25268 -21.28524 -20.49101 -19.98409 -18.56939 -17.71171 -17.04148 -16.88606 -16.42288 -16.07353 -15.46699 -15.06951 -14.78565 -14.72210 -14.44102 -14.37910 -13.87763 -13.77445 -13.51766 -13.44859 -13.37116 -13.16302 -13.03671 -12.68259 -12.61755 -12.44878 -12.06761 -11.88339 -11.77302 -11.54746 -11.19778 -10.88544 -10.67103 -10.65069 -10.56804 -10.48683 -10.06995 -9.98633 -9.76473 -9.68698 -9.15389 -8.89508 -8.66175 -8.56388 -6.94651 -5.76627 -3.06547 -0.12896 0.36388 1.53873 2.18601 2.86900 3.13136 3.43560 3.48397 3.50726 3.77589 3.89689 4.07115 4.18652 4.23263 4.29316 4.46007 4.55951 4.66867 4.71664 4.76079 4.86830 4.92353 4.94512 5.03781 5.06850 5.14265 5.24464 5.29700 5.46064 5.51563 5.53270 5.57276 5.60030 5.73102 5.77933 5.86860 5.90140 5.93400 5.99822 6.06981 6.14050 6.19734 6.34610 6.36458 6.46755 6.63849 6.77220 7.44512 7.54097 7.68761 8.09759 8.41318 9.52605 10.09000 10.43117 11.45897 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.002218 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.310613 B =12621.301794 C =13641.329696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.014 4.014 3 C -0.187 4.187 4 C 0.141 3.859 5 N -0.483 5.483 6 C 0.145 3.855 7 C -0.103 4.103 8 C -0.051 4.051 9 C -0.119 4.119 10 C 0.567 3.433 11 O -0.528 6.528 12 N -0.611 5.611 13 C 0.088 3.912 14 C -0.128 4.128 15 C -0.105 4.105 16 H 0.086 0.914 17 C 0.165 3.835 18 N -0.733 5.733 19 C -0.243 4.243 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.282 1.282 26 H -0.291 1.291 27 C 0.115 3.885 28 C -0.097 4.097 29 C -0.111 4.111 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.160 0.840 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.022 0.978 42 H 0.025 0.975 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.233 28.571 -2.385 29.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.022 4.022 3 C -0.207 4.207 4 C -0.031 4.031 5 N -0.191 5.191 6 C 0.023 3.977 7 C -0.121 4.121 8 C -0.071 4.071 9 C -0.122 4.122 10 C 0.356 3.644 11 O -0.405 6.405 12 N -0.344 5.344 13 C -0.035 4.035 14 C -0.166 4.166 15 C -0.125 4.125 16 H 0.104 0.896 17 C 0.037 3.963 18 N -0.378 5.378 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.208 1.208 26 H -0.218 1.218 27 C -0.006 4.006 28 C -0.115 4.115 29 C -0.113 4.113 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.177 0.823 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.218 0.782 44 H 0.066 0.934 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 9.471 27.797 -2.401 29.464 hybrid contribution -1.187 -0.717 -0.043 1.387 sum 8.284 27.081 -2.443 28.425 Atomic orbital electron populations 1.20965 0.89746 1.03944 1.03567 1.20245 0.96767 0.92024 0.93191 1.21761 0.95624 0.98814 1.04506 1.22997 0.91558 0.96472 0.92043 1.68067 1.39967 0.97734 1.13359 1.19046 0.89713 0.92549 0.96358 1.20705 1.00620 0.89630 1.01154 1.20950 0.92779 0.98815 0.94585 1.19989 0.94450 0.92944 1.04855 1.17867 0.80586 0.88671 0.77239 1.90822 1.64252 1.36022 1.49431 1.48431 1.05315 1.09047 1.71645 1.22564 0.90651 0.89487 1.00796 1.22741 0.94399 0.96653 1.02848 1.22595 0.94585 0.94058 1.01264 0.89573 1.20585 0.94381 0.85548 0.95778 1.42367 1.39101 1.02918 1.53389 1.19194 1.09239 0.88251 1.20691 0.91150 1.24766 0.98916 0.97552 0.99684 1.69661 1.33644 1.20263 1.34343 0.86188 0.79943 0.81916 0.78102 1.21730 1.20761 1.21752 1.22396 0.89766 0.86170 1.02298 1.23086 1.02869 0.90490 0.95079 1.18692 0.94065 0.94003 1.04583 0.89698 0.90220 0.90641 0.84373 0.82295 0.84076 0.83821 0.90631 0.90698 0.89937 0.89655 0.96001 0.95750 0.78167 0.93427 0.89427 0.90677 0.81160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.58 9.60 36.00 0.35 -0.23 16 2 C -0.01 -0.11 5.92 -104.22 -0.62 -0.72 16 3 C -0.19 -1.21 9.72 -39.78 -0.39 -1.60 16 4 C 0.14 1.08 11.14 -17.46 -0.19 0.89 16 5 N -0.48 -5.19 10.33 -10.92 -0.11 -5.30 16 6 C 0.14 1.64 6.61 -84.78 -0.56 1.08 16 7 C -0.10 -1.12 9.95 -39.54 -0.39 -1.51 16 8 C -0.05 -0.60 9.48 -39.59 -0.38 -0.98 16 9 C -0.12 -1.50 5.87 -104.98 -0.62 -2.12 16 10 C 0.57 8.78 7.80 -12.36 -0.10 8.69 16 11 O -0.53 -10.23 16.56 5.31 0.09 -10.14 16 12 N -0.61 -8.48 3.33 -178.05 -0.59 -9.08 16 13 C 0.09 0.83 4.87 -3.07 -0.01 0.82 16 14 C -0.13 -1.27 6.42 -24.90 -0.16 -1.43 16 15 C -0.11 -1.55 3.10 -88.48 -0.27 -1.82 16 16 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 17 C 0.17 3.07 5.71 -4.04 -0.02 3.05 16 18 N -0.73 -18.11 5.45 -59.90 -0.33 -18.44 16 19 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 23 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 C 0.11 1.86 6.11 -2.53 -0.02 1.85 16 28 C -0.10 -0.99 7.91 -38.73 -0.31 -1.29 16 29 C -0.11 -1.13 5.74 -106.81 -0.61 -1.74 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.24 8.10 -51.93 -0.42 -0.18 16 32 H 0.07 0.31 6.46 -51.93 -0.34 -0.02 16 33 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 34 H 0.16 0.70 8.06 -52.48 -0.42 0.27 16 35 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.14 1.67 7.63 -52.48 -0.40 1.27 16 37 H 0.08 0.59 6.73 -51.93 -0.35 0.24 16 38 H 0.08 0.57 6.68 -51.93 -0.35 0.23 16 39 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.38 10.11 7.53 -40.82 -0.31 9.81 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.09 1.68 7.98 -51.93 -0.41 1.26 16 46 H 0.07 1.27 8.00 -51.93 -0.42 0.85 16 47 H 0.17 1.37 1.06 -60.72 -0.06 1.30 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -35.27 380.26 -10.46 -45.73 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.40 Total: 6.14 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -4.55 Total: -4.41 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.31 Total: -60.43 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.27 -10.46 -45.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752941491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.565 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds