Wall clock time and date at job start Tue Mar 31 2020 22:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36611 * 120.92173 * 2 1 4 4 C 1.39272 * 119.90576 * 180.02562 * 3 2 1 5 5 N 1.31142 * 121.77140 * 0.02562 * 4 3 2 6 6 C 1.33613 * 121.39491 * 359.95791 * 5 4 3 7 7 C 1.40760 * 120.83447 * 180.02562 * 6 5 4 8 8 C 1.35692 * 120.11554 * 180.02562 * 7 6 5 9 9 C 1.40631 * 120.92436 * 0.02562 * 8 7 6 10 10 C 1.47774 * 119.80537 * 179.97438 * 9 8 7 11 11 O 1.21563 * 119.99351 * 7.42484 * 10 9 8 12 12 N 1.34774 * 119.99954 * 187.42870 * 10 9 8 13 13 C 1.47018 * 125.65203 * 354.26062 * 12 10 9 14 14 C 1.54318 * 107.27088 * 181.09619 * 13 12 10 15 15 C 1.55150 * 102.94336 * 22.19559 * 14 13 12 16 16 H 1.08998 * 111.03726 * 82.58468 * 15 14 13 17 17 C 1.53001 * 111.00665 * 206.41951 * 15 14 13 18 18 N 1.46504 * 109.47325 * 178.64893 * 17 15 14 19 19 C 1.36937 * 119.99714 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00081 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99736 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00117 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00228 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46824 * 269.99545 * 23 21 19 25 25 H 1.48498 * 109.46990 * 29.98876 * 23 21 19 26 26 H 1.48499 * 109.47222 * 149.99926 * 23 21 19 27 27 C 1.47427 * 125.64551 * 174.30822 * 12 10 9 28 28 C 1.38546 * 120.39908 * 0.27098 * 9 8 7 29 29 C 1.40196 * 119.39786 * 359.46324 * 28 9 8 30 30 H 1.08999 * 109.47471 * 269.97761 * 1 2 3 31 31 H 1.09004 * 109.47311 * 29.97873 * 1 2 3 32 32 H 1.09002 * 109.47146 * 149.97735 * 1 2 3 33 33 H 1.07999 * 120.04765 * 359.97438 * 3 2 1 34 34 H 1.08007 * 119.11291 * 180.02562 * 4 3 2 35 35 H 1.07999 * 119.94047 * 0.04327 * 7 6 5 36 36 H 1.08003 * 119.53963 * 180.02562 * 8 7 6 37 37 H 1.08997 * 109.88309 * 300.51929 * 13 12 10 38 38 H 1.09005 * 109.87867 * 61.52877 * 13 12 10 39 39 H 1.09003 * 110.72287 * 263.83009 * 14 13 12 40 40 H 1.09002 * 110.71833 * 140.56041 * 14 13 12 41 41 H 1.09003 * 109.47165 * 58.65046 * 17 15 14 42 42 H 1.09001 * 109.47138 * 298.65372 * 17 15 14 43 43 H 0.96998 * 119.99659 * 359.97438 * 18 17 15 44 44 H 0.96996 * 120.00305 * 180.02562 * 22 21 19 45 45 H 1.09003 * 110.36692 * 36.99005 * 27 12 10 46 46 H 1.09004 * 110.45802 * 274.71785 * 27 12 10 47 47 H 1.08004 * 120.30458 * 179.70551 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2089 1.1719 0.0000 4 6 3.6014 1.1473 -0.0005 5 7 4.2721 0.0203 -0.0016 6 6 3.6479 -1.1611 -0.0013 7 6 4.3795 -2.3636 -0.0018 8 6 3.7306 -3.5553 -0.0021 9 6 2.3255 -3.6132 -0.0023 10 6 1.6443 -4.9245 -0.0031 11 8 2.2906 -5.9451 0.1324 12 7 0.3066 -4.9889 -0.1543 13 6 -0.6061 -3.8376 -0.2081 14 6 -2.0372 -4.3942 -0.3615 15 6 -1.9074 -5.8413 0.1827 16 1 -1.9742 -5.8577 1.2705 17 6 -2.9603 -6.7588 -0.4422 18 7 -2.7872 -8.1206 0.0695 19 6 -3.6212 -9.1216 -0.3520 20 1 -4.4068 -8.9071 -1.0613 21 6 -3.4575 -10.4117 0.1333 22 7 -2.5003 -10.6730 0.9983 23 14 -4.5946 -11.7775 -0.4421 24 1 -5.7720 -11.8541 0.4596 25 1 -5.0493 -11.4924 -1.8267 26 1 -3.8665 -13.0715 -0.4165 27 6 -0.4839 -6.2257 -0.2920 28 6 1.5759 -2.4480 -0.0080 29 6 2.2307 -1.2084 -0.0020 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6848 2.1162 -0.0004 34 1 4.1436 2.0814 -0.0001 35 1 5.4592 -2.3377 -0.0018 36 1 4.3012 -4.4723 -0.0021 37 1 -0.5295 -3.2605 0.7134 38 1 -0.3575 -3.2072 -1.0619 39 1 -2.3379 -4.4017 -1.4092 40 1 -2.7414 -3.8181 0.2387 41 1 -2.8437 -6.7604 -1.5260 42 1 -3.9560 -6.3976 -0.1846 43 1 -2.0814 -8.3132 0.7064 44 1 -2.3857 -11.5746 1.3372 45 1 -0.0721 -7.0117 0.3410 46 1 -0.5057 -6.5500 -1.3325 47 1 0.4969 -2.4942 -0.0129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752941491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:06 Heat of formation + Delta-G solvation = 31.624527 kcal Electronic energy + Delta-G solvation = -28518.760627 eV Core-core repulsion = 24666.364198 eV Total energy + Delta-G solvation = -3852.396429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.23821 -41.13015 -39.05019 -37.75877 -36.55957 -35.69835 -34.07768 -32.37001 -31.62340 -31.53366 -30.06381 -28.76425 -27.27096 -26.10705 -24.77210 -24.49648 -23.53203 -22.08225 -21.51371 -21.17694 -19.46484 -19.07816 -18.45888 -17.77891 -17.34983 -17.02268 -16.60612 -16.43686 -15.95871 -15.55830 -15.50146 -15.31304 -15.10680 -14.96922 -14.74813 -14.51007 -14.16874 -14.06253 -13.86645 -13.78833 -13.48122 -13.35247 -13.12575 -13.03354 -12.74845 -12.73296 -12.60334 -12.36276 -12.14958 -12.10186 -11.81111 -11.62970 -11.52469 -11.18929 -11.18254 -10.93302 -10.44275 -9.98355 -9.73404 -9.30325 -8.99491 -7.94482 -5.23765 -0.85443 -0.36976 0.82820 1.31976 1.46930 1.49173 1.57544 1.76852 2.18483 2.56204 3.03109 3.16179 3.32871 3.39143 3.40739 3.52894 3.59763 3.70780 3.81586 3.87853 3.98349 4.02617 4.16668 4.21439 4.27705 4.31898 4.46106 4.50401 4.54601 4.62158 4.75115 4.77882 4.79833 4.83543 4.84605 4.86260 4.98993 5.02732 5.04374 5.12595 5.20456 5.22684 5.27004 5.34647 5.42280 5.48744 5.50948 5.77170 6.27186 6.35091 6.90012 6.93747 7.33161 8.10399 8.30829 9.29227 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.002218 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.310613 B =12621.301794 C =13641.329696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.014 4.014 3 C -0.181 4.181 4 C 0.144 3.856 5 N -0.518 5.518 6 C 0.128 3.872 7 C -0.108 4.108 8 C -0.064 4.064 9 C -0.146 4.146 10 C 0.561 3.439 11 O -0.586 6.586 12 N -0.609 5.609 13 C 0.078 3.922 14 C -0.112 4.112 15 C -0.097 4.097 16 H 0.079 0.921 17 C 0.163 3.837 18 N -0.750 5.750 19 C -0.241 4.241 20 H 0.081 0.919 21 C -0.082 4.082 22 N -0.973 5.973 23 Si 0.975 3.025 24 H -0.285 1.285 25 H -0.267 1.267 26 H -0.300 1.300 27 C 0.118 3.882 28 C -0.072 4.072 29 C -0.129 4.129 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.177 0.823 34 H 0.191 0.809 35 H 0.148 0.852 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.121 0.879 41 H 0.027 0.973 42 H 0.039 0.961 43 H 0.371 0.629 44 H 0.249 0.751 45 H 0.042 0.958 46 H 0.063 0.937 47 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.652 33.290 -3.288 33.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.022 4.022 3 C -0.201 4.201 4 C -0.027 4.027 5 N -0.228 5.228 6 C 0.007 3.993 7 C -0.126 4.126 8 C -0.085 4.085 9 C -0.149 4.149 10 C 0.352 3.648 11 O -0.468 6.468 12 N -0.341 5.341 13 C -0.042 4.042 14 C -0.150 4.150 15 C -0.117 4.117 16 H 0.097 0.903 17 C 0.036 3.964 18 N -0.393 5.393 19 C -0.373 4.373 20 H 0.099 0.901 21 C -0.274 4.274 22 N -0.624 5.624 23 Si 0.804 3.196 24 H -0.212 1.212 25 H -0.191 1.191 26 H -0.227 1.227 27 C -0.005 4.005 28 C -0.090 4.090 29 C -0.131 4.131 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.195 0.805 34 H 0.208 0.792 35 H 0.166 0.834 36 H 0.149 0.851 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.139 0.861 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.202 0.798 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.081 0.919 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 6.835 32.603 -3.339 33.479 hybrid contribution -0.369 -1.920 0.208 1.966 sum 6.466 30.683 -3.132 31.513 Atomic orbital electron populations 1.21125 0.87158 1.05448 1.04790 1.20668 0.98594 0.91090 0.91872 1.22206 0.95129 1.00132 1.02607 1.23702 0.92816 0.96630 0.89588 1.68092 1.40982 0.98313 1.15387 1.19243 0.90660 0.92828 0.96594 1.20779 1.01072 0.89560 1.01212 1.20876 0.92935 0.98823 0.95872 1.19762 0.94595 0.92163 1.08369 1.18417 0.80900 0.89209 0.76245 1.90777 1.65596 1.38124 1.52307 1.48471 1.05280 1.09634 1.70736 1.22975 0.89374 0.88387 1.03462 1.22776 0.95301 0.92844 1.04043 1.22428 0.91894 0.96708 1.00664 0.90302 1.20797 0.96248 0.83348 0.95973 1.42661 1.38278 1.05073 1.53240 1.19670 1.08988 0.89014 1.19618 0.90077 1.25636 1.00878 1.00226 1.00625 1.69842 1.35949 1.20226 1.36392 0.85116 0.77838 0.78377 0.78295 1.21219 1.19122 1.22702 1.22144 0.91269 0.86534 1.00530 1.23279 1.03663 0.89514 0.92576 1.18919 0.93826 0.95076 1.05283 0.88395 0.88044 0.89932 0.80537 0.79196 0.83413 0.85137 0.87963 0.87694 0.88594 0.86107 0.95500 0.94318 0.79762 0.94178 0.93938 0.91918 0.78808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.45 9.60 71.23 0.68 0.23 16 2 C -0.01 -0.16 5.92 -19.61 -0.12 -0.27 16 3 C -0.18 -1.50 9.72 22.14 0.22 -1.29 16 4 C 0.14 1.73 11.14 85.04 0.95 2.68 16 5 N -0.52 -10.42 10.33 -188.46 -1.95 -12.36 16 6 C 0.13 2.82 6.61 40.37 0.27 3.09 16 7 C -0.11 -2.48 9.95 22.30 0.22 -2.25 16 8 C -0.06 -1.67 9.48 22.26 0.21 -1.46 16 9 C -0.15 -3.79 5.87 -20.10 -0.12 -3.90 16 10 C 0.56 18.42 7.80 86.77 0.68 19.10 16 11 O -0.59 -25.09 16.56 -3.91 -0.06 -25.15 16 12 N -0.61 -17.02 3.33 -835.51 -2.78 -19.80 16 13 C 0.08 1.23 4.87 86.73 0.42 1.65 16 14 C -0.11 -1.76 6.42 31.78 0.20 -1.55 16 15 C -0.10 -2.76 3.10 -9.41 -0.03 -2.79 16 16 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 17 C 0.16 5.90 5.71 86.38 0.49 6.40 16 18 N -0.75 -37.77 5.45 -343.44 -1.87 -39.64 16 19 C -0.24 -13.40 9.99 84.03 0.84 -12.57 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 21 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 22 N -0.97 -61.44 13.06 21.65 0.28 -61.15 16 23 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 27 C 0.12 4.00 6.11 86.85 0.53 4.53 16 28 C -0.07 -1.33 7.91 22.82 0.18 -1.15 16 29 C -0.13 -2.32 5.74 -21.28 -0.12 -2.44 16 30 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.10 -0.03 8.10 -2.39 -0.02 -0.04 16 32 H 0.08 0.19 6.46 -2.39 -0.02 0.17 16 33 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 34 H 0.19 0.90 8.06 -2.91 -0.02 0.88 16 35 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 36 H 0.13 3.55 7.63 -2.91 -0.02 3.53 16 37 H 0.10 1.13 6.73 -2.39 -0.02 1.11 16 38 H 0.11 1.11 6.68 -2.38 -0.02 1.09 16 39 H 0.10 1.33 8.04 -2.39 -0.02 1.31 16 40 H 0.12 1.16 8.14 -2.39 -0.02 1.15 16 41 H 0.03 0.97 8.10 -2.39 -0.02 0.95 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.37 20.47 7.53 -92.71 -0.70 19.77 16 44 H 0.25 15.34 8.31 -92.71 -0.77 14.56 16 45 H 0.04 1.80 7.98 -2.39 -0.02 1.78 16 46 H 0.06 2.24 8.00 -2.38 -0.02 2.22 16 47 H 0.20 2.37 1.06 -10.64 -0.01 2.36 16 Total: -1.00 -83.53 380.26 1.92 -81.61 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.30 Total: 24.11 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 5.97 Total: 3.67 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -6.32 Total: -132.96 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.06 Total: -25.15 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -83.53 1.92 -81.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752941491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.234 kcal (2) G-P(sol) polarization free energy of solvation -83.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds