Wall clock time and date at job start Tue Mar 31 2020 22:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30821 * 119.22993 * 2 1 4 4 C 1.33791 * 121.71871 * 180.02562 * 3 2 1 5 5 C 1.40528 * 120.82738 * 180.02562 * 4 3 2 6 6 C 1.36134 * 119.81827 * 179.97438 * 5 4 3 7 7 C 1.39350 * 121.09212 * 359.97243 * 6 5 4 8 8 C 1.36146 * 120.83571 * 0.04727 * 7 6 5 9 9 C 1.40553 * 119.61430 * 359.95195 * 8 7 6 10 10 C 1.40491 * 121.21779 * 180.27650 * 9 8 7 11 11 C 1.39047 * 117.96420 * 180.21468 * 10 9 8 12 12 C 1.47753 * 120.27373 * 179.79439 * 11 10 9 13 13 O 1.21563 * 120.00385 * 173.16840 * 12 11 10 14 14 N 1.34779 * 119.99729 * 353.16377 * 12 11 10 15 15 C 1.46502 * 120.00109 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47133 * 180.02562 * 15 14 12 17 17 N 1.46501 * 109.46744 * 180.02562 * 16 15 14 18 18 C 1.36933 * 120.00163 * 269.99876 * 17 16 15 19 19 H 1.08001 * 120.00097 * 148.38377 * 18 17 16 20 20 C 1.38808 * 119.99922 * 328.38247 * 18 17 16 21 21 N 1.31614 * 120.00168 * 337.38832 * 20 18 17 22 22 Si 1.86807 * 119.99860 * 157.38788 * 20 18 17 23 23 H 1.48508 * 109.47135 * 90.00010 * 22 20 18 24 24 H 1.48499 * 109.47035 * 209.99867 * 22 20 18 25 25 H 1.48501 * 109.47147 * 330.00285 * 22 20 18 26 26 C 1.46501 * 119.99956 * 90.00283 * 17 16 15 27 27 C 1.53003 * 117.50087 * 182.86876 * 26 17 16 28 28 C 1.53002 * 60.00111 * 252.50743 * 27 26 17 29 29 H 1.08997 * 109.47335 * 266.11483 * 1 2 3 30 30 H 1.09004 * 109.47340 * 26.10756 * 1 2 3 31 31 H 1.08998 * 109.47272 * 146.10619 * 1 2 3 32 32 H 1.08000 * 120.09436 * 359.97438 * 5 4 3 33 33 H 1.07999 * 119.45810 * 179.97438 * 6 5 4 34 34 H 1.07990 * 119.58276 * 180.02562 * 7 6 5 35 35 H 1.07994 * 120.18926 * 179.97438 * 8 7 6 36 36 H 1.08000 * 121.02112 * 0.02562 * 10 9 8 37 37 H 0.97001 * 120.00049 * 0.02562 * 14 12 11 38 38 H 1.09005 * 109.46957 * 60.00106 * 15 14 12 39 39 H 1.09000 * 109.46891 * 300.00483 * 15 14 12 40 40 H 1.08998 * 109.47076 * 60.00659 * 16 15 14 41 41 H 1.09000 * 109.47389 * 299.99888 * 16 15 14 42 42 H 0.97008 * 120.00005 * 175.02962 * 21 20 18 43 43 H 1.09004 * 115.54978 * 328.57553 * 26 17 16 44 44 H 1.08996 * 117.49813 * 359.97438 * 27 26 17 45 45 H 1.08999 * 117.49831 * 145.01742 * 27 26 17 46 46 H 1.08997 * 117.50092 * 252.51275 * 28 27 26 47 47 H 1.09000 * 117.51569 * 107.47683 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4825 1.1997 -0.0005 5 6 4.1495 2.4366 0.0000 6 6 5.5104 2.4717 0.0000 7 6 6.2606 1.2974 0.0001 8 6 5.6512 0.0800 -0.0009 9 6 4.2476 0.0059 -0.0008 10 6 3.5838 -1.2323 0.0040 11 6 2.1933 -1.2267 -0.0009 12 6 1.4433 -2.4997 -0.0007 13 8 0.2337 -2.4926 0.1203 14 7 2.1003 -3.6689 -0.1348 15 6 1.3568 -4.9312 -0.1340 16 6 2.3326 -6.0980 -0.2992 17 7 1.5889 -7.3602 -0.2991 18 6 1.3585 -8.0190 0.8790 19 1 0.4585 -8.6027 1.0042 20 6 2.2816 -7.9366 1.9124 21 7 3.5349 -7.6299 1.6523 22 14 1.7452 -8.2611 3.6721 23 1 1.9025 -9.7055 3.9792 24 1 2.5855 -7.4632 4.6008 25 1 0.3212 -7.8726 3.8351 26 6 1.0919 -7.9177 -1.5594 27 6 0.2651 -9.2030 -1.4861 28 6 1.6938 -9.2426 -2.0321 29 1 -0.3634 -0.0696 1.0253 30 1 -0.3634 0.9228 -0.4522 31 1 -0.3634 -0.8530 -0.5731 32 1 3.5841 3.3568 0.0005 33 1 6.0171 3.4255 0.0000 34 1 7.3390 1.3537 0.0005 35 1 6.2428 -0.8235 -0.0012 36 1 4.1365 -2.1601 0.0083 37 1 3.0655 -3.6746 -0.2310 38 1 0.6441 -4.9336 -0.9588 39 1 0.8210 -5.0367 0.8094 40 1 3.0449 -6.0955 0.5258 41 1 2.8686 -5.9926 -1.2424 42 1 4.1637 -7.5015 2.3797 43 1 0.8210 -7.1875 -2.3221 44 1 0.0913 -9.6340 -0.5002 45 1 -0.5500 -9.3185 -2.2004 46 1 1.8187 -9.3841 -3.1056 47 1 2.4599 -9.6992 -1.4054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753156552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:34 Heat of formation + Delta-G solvation = 72.061040 kcal Electronic energy + Delta-G solvation = -28387.546292 eV Core-core repulsion = 24536.903321 eV Total energy + Delta-G solvation = -3850.642970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.19848 -39.36728 -37.37301 -37.05553 -34.99357 -33.90905 -33.19095 -31.93721 -31.03648 -30.28757 -28.15143 -27.41208 -25.01906 -24.22477 -22.78484 -22.38050 -21.81233 -21.35249 -20.69867 -19.82660 -18.54513 -17.65263 -16.95402 -16.32383 -15.74726 -15.63229 -15.47389 -15.24208 -14.75525 -14.72475 -14.43804 -14.33433 -13.90360 -13.63921 -13.57875 -13.11924 -13.04908 -12.73047 -12.67499 -12.12021 -12.00035 -11.94161 -11.67939 -11.63619 -11.49278 -11.08893 -10.80146 -10.76287 -10.72468 -10.36714 -10.16135 -9.95865 -9.89960 -9.72094 -9.42791 -9.29830 -8.96637 -8.62360 -8.53399 -8.48231 -6.75354 -5.89866 -3.48619 0.01030 0.46301 1.64309 2.44622 3.25551 3.27854 3.34863 3.38441 3.43156 3.90620 4.02164 4.30251 4.37408 4.43988 4.50336 4.54550 4.84235 4.84995 4.92413 5.01878 5.18652 5.23506 5.24645 5.43345 5.52521 5.65476 5.70274 5.80523 5.83203 5.89341 5.96944 6.04007 6.05726 6.13043 6.13481 6.17254 6.22714 6.36683 6.43400 6.46139 6.54611 6.61372 6.77106 6.91469 6.98961 7.13462 7.49924 7.69528 7.71124 7.80142 8.32169 8.40943 9.01934 9.65869 10.17696 11.05326 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013119 B = 0.002629 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.737858 B =10647.444714 C =11066.969038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.214 3.786 3 N -0.486 5.486 4 C 0.148 3.852 5 C -0.102 4.102 6 C -0.092 4.092 7 C -0.127 4.127 8 C -0.083 4.083 9 C -0.119 4.119 10 C -0.015 4.015 11 C -0.181 4.181 12 C 0.555 3.445 13 O -0.531 6.531 14 N -0.711 5.711 15 C 0.100 3.900 16 C 0.129 3.871 17 N -0.547 5.547 18 C -0.253 4.253 19 H 0.071 0.929 20 C 0.007 3.993 21 N -0.886 5.886 22 Si 0.897 3.103 23 H -0.285 1.285 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.119 3.881 27 C -0.195 4.195 28 C -0.221 4.221 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.147 0.853 37 H 0.395 0.605 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.030 0.970 42 H 0.255 0.745 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.874 16.888 -5.235 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.061 3.939 3 N -0.195 5.195 4 C 0.027 3.973 5 C -0.121 4.121 6 C -0.112 4.112 7 C -0.145 4.145 8 C -0.102 4.102 9 C -0.121 4.121 10 C -0.041 4.041 11 C -0.186 4.186 12 C 0.341 3.659 13 O -0.410 6.410 14 N -0.362 5.362 15 C -0.025 4.025 16 C 0.002 3.998 17 N -0.264 5.264 18 C -0.382 4.382 19 H 0.088 0.912 20 C -0.193 4.193 21 N -0.529 5.529 22 Si 0.725 3.275 23 H -0.212 1.212 24 H -0.214 1.214 25 H -0.202 1.202 26 C 0.010 3.990 27 C -0.233 4.233 28 C -0.262 4.262 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.230 0.770 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.049 0.951 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.770 17.648 -5.016 18.730 hybrid contribution 0.913 -1.015 0.917 1.645 sum 4.683 16.633 -4.098 17.759 Atomic orbital electron populations 1.21184 0.87271 1.04277 1.04426 1.21619 0.97718 0.86207 0.88402 1.67910 1.08165 1.28196 1.15187 1.19015 0.89228 0.93007 0.96084 1.20805 0.94203 0.96375 1.00724 1.20968 0.93688 0.98812 0.97727 1.20922 1.00442 0.92269 1.00872 1.21097 0.92478 0.98833 0.97765 1.18779 0.94987 0.93614 1.04735 1.22072 0.93331 0.97822 0.90913 1.20956 0.94082 0.95699 1.07890 1.17930 0.87247 0.83247 0.77495 1.90706 1.13491 1.86813 1.49960 1.46036 1.11058 1.06455 1.72629 1.22380 0.96515 0.81763 1.01852 1.21244 0.93895 0.82377 1.02329 1.43265 1.62907 1.19171 1.01042 1.19149 1.01219 1.27741 0.90137 0.91176 1.25019 0.94030 1.00816 0.99412 1.69983 1.01477 1.50373 1.31055 0.86399 0.78445 0.77923 0.84697 1.21197 1.21414 1.20193 1.21232 1.00010 0.87458 0.90329 1.23041 0.93533 1.04491 1.02260 1.23361 0.96433 1.07696 0.98664 0.89786 0.91372 0.87213 0.84652 0.85241 0.85351 0.84807 0.83529 0.77025 0.92885 0.91273 0.86833 0.95115 0.93521 0.89381 0.88393 0.90583 0.91096 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 8.95 36.01 0.32 -1.20 16 2 C 0.21 3.08 6.82 -82.15 -0.56 2.52 16 3 N -0.49 -6.89 10.20 -6.94 -0.07 -6.97 16 4 C 0.15 1.89 6.61 -84.79 -0.56 1.33 16 5 C -0.10 -1.03 9.97 -39.48 -0.39 -1.43 16 6 C -0.09 -0.72 9.94 -39.92 -0.40 -1.12 16 7 C -0.13 -0.99 9.96 -39.92 -0.40 -1.38 16 8 C -0.08 -0.75 9.77 -39.46 -0.39 -1.14 16 9 C -0.12 -1.39 5.74 -106.82 -0.61 -2.01 16 10 C -0.01 -0.18 9.38 -38.43 -0.36 -0.54 16 11 C -0.18 -2.56 5.89 -104.83 -0.62 -3.18 16 12 C 0.56 9.05 7.69 -12.37 -0.10 8.96 16 13 O -0.53 -10.00 13.26 5.31 0.07 -9.93 16 14 N -0.71 -11.28 5.51 -61.28 -0.34 -11.62 16 15 C 0.10 1.91 6.00 -4.04 -0.02 1.89 16 16 C 0.13 2.71 5.45 -4.04 -0.02 2.68 16 17 N -0.55 -12.72 2.80 -165.66 -0.46 -13.18 16 18 C -0.25 -6.49 8.75 -15.06 -0.13 -6.62 16 19 H 0.07 1.81 6.40 -52.49 -0.34 1.47 16 20 C 0.01 0.17 4.99 -17.43 -0.09 0.08 16 21 N -0.89 -23.59 11.12 55.49 0.62 -22.97 16 22 Si 0.90 20.84 29.61 -169.99 -5.03 15.81 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.12 2.42 6.56 -67.93 -0.45 1.98 16 27 C -0.20 -3.71 9.79 -26.73 -0.26 -3.97 16 28 C -0.22 -4.29 10.36 -26.73 -0.28 -4.57 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.11 1.60 5.60 -51.93 -0.29 1.31 16 32 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.15 1.37 6.54 -52.49 -0.34 1.03 16 37 H 0.40 5.25 6.59 -40.82 -0.27 4.98 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.11 2.68 5.13 -51.93 -0.27 2.42 16 41 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 42 H 0.25 6.58 8.32 -40.82 -0.34 6.24 16 43 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 44 H 0.10 2.03 6.31 -51.93 -0.33 1.70 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 47 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 LS Contribution 386.76 15.07 5.83 5.83 Total: -1.00 -30.02 386.76 -11.16 -41.18 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.46 Total: 9.58 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -5.31 Total: -7.72 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.26 Total: -54.73 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.02 -11.16 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753156552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.237 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds