Wall clock time and date at job start Tue Mar 31 2020 22:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39312 * 119.11580 * 2 1 4 4 C 1.36574 * 119.90238 * 179.97438 * 3 2 1 5 5 C 1.40895 * 118.15621 * 0.02562 * 4 3 2 6 6 C 1.40182 * 121.21078 * 179.97438 * 5 4 3 7 7 C 1.38551 * 119.39966 * 179.68483 * 6 5 4 8 8 C 1.47768 * 119.80900 * 180.32897 * 7 6 5 9 9 O 1.21566 * 119.99776 * 22.50524 * 8 7 6 10 10 N 1.34768 * 120.00385 * 202.50762 * 8 7 6 11 11 C 1.47430 * 125.64595 * 6.13575 * 10 8 7 12 12 C 1.54912 * 104.82971 * 155.83970 * 11 10 8 13 13 C 1.55158 * 101.58076 * 37.01106 * 12 11 10 14 14 C 1.47022 * 125.65175 * 185.83768 * 10 8 7 15 15 H 1.08999 * 109.87953 * 300.50726 * 14 10 8 16 16 C 1.52997 * 109.88347 * 61.67334 * 14 10 8 17 17 N 1.46500 * 109.47114 * 283.98836 * 16 14 10 18 18 C 1.36939 * 120.00166 * 175.42491 * 17 16 14 19 19 H 1.08000 * 119.99706 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99969 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00297 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00074 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47140 * 59.99227 * 22 20 18 24 24 H 1.48496 * 109.47502 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46783 * 299.99658 * 22 20 18 26 26 C 1.40635 * 120.38450 * 0.61372 * 7 6 5 27 27 C 1.35694 * 120.92699 * 359.42003 * 26 7 6 28 28 C 1.40760 * 120.11106 * 0.25151 * 27 26 7 29 29 N 1.31120 * 119.11143 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46625 * 89.99845 * 1 2 3 31 31 H 1.08996 * 109.47080 * 209.99859 * 1 2 3 32 32 H 1.08994 * 109.46728 * 330.00319 * 1 2 3 33 33 H 1.08002 * 120.04944 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.91999 * 179.97438 * 4 3 2 35 35 H 1.08005 * 120.30122 * 0.02562 * 6 5 4 36 36 H 1.08994 * 110.37055 * 274.67784 * 11 10 8 37 37 H 1.08997 * 110.36853 * 37.00361 * 11 10 8 38 38 H 1.08999 * 111.00512 * 155.08404 * 12 11 10 39 39 H 1.08996 * 111.00666 * 278.93681 * 12 11 10 40 40 H 1.08995 * 110.72212 * 82.86648 * 13 12 11 41 41 H 1.09009 * 110.71654 * 205.95585 * 13 12 11 42 42 H 1.08995 * 109.47458 * 43.98964 * 16 14 10 43 43 H 1.09008 * 109.47282 * 163.99329 * 16 14 10 44 44 H 0.96998 * 120.00033 * 355.43452 * 17 16 14 45 45 H 0.96998 * 120.00080 * 180.02562 * 21 20 18 46 46 H 1.07999 * 119.52984 * 179.69265 * 26 7 6 47 47 H 1.07997 * 119.94531 * 180.27740 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5505 1.2358 0.0005 5 6 4.2324 0.0029 0.0005 6 6 5.6331 -0.0526 0.0005 7 6 6.2650 -1.2857 0.0071 8 6 7.7410 -1.3546 0.0145 9 8 8.3916 -0.4103 0.4180 10 7 8.3660 -2.4644 -0.4260 11 6 7.7123 -3.6254 -1.0570 12 6 8.8224 -4.2915 -1.9078 13 6 10.0678 -4.0956 -1.0034 14 6 9.8133 -2.7151 -0.3625 15 1 10.3478 -1.9432 -0.9161 16 6 10.2757 -2.7283 1.0958 17 7 10.3414 -1.3543 1.5997 18 6 10.6423 -1.1210 2.9151 19 1 10.8315 -1.9500 3.5810 20 6 10.7040 0.1809 3.3926 21 7 10.4739 1.1912 2.5810 22 14 11.1152 0.4992 5.1868 23 1 12.4562 -0.0597 5.4940 24 1 11.1187 1.9621 5.4419 25 1 10.0978 -0.1519 6.0508 26 6 5.5097 -2.4720 0.0008 27 6 4.1533 -2.4352 -0.0001 28 6 3.4804 -1.1988 0.0001 29 7 2.1450 -1.1456 -0.0005 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5138 33 1 1.6314 2.1444 -0.0004 34 1 4.0927 2.1699 0.0001 35 1 6.2145 0.8576 0.0009 36 1 7.3510 -4.3172 -0.2962 37 1 6.8908 -3.2983 -1.6944 38 1 8.6142 -5.3503 -2.0620 39 1 8.9465 -3.7766 -2.8604 40 1 10.1184 -4.8746 -0.2427 41 1 10.9797 -4.0819 -1.6005 42 1 9.5693 -3.3019 1.6958 43 1 11.2627 -3.1864 1.1600 44 1 10.1716 -0.6097 1.0016 45 1 10.5174 2.1010 2.9147 46 1 6.0166 -3.4257 0.0010 47 1 3.5890 -3.3560 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753601740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:09 Heat of formation + Delta-G solvation = 57.839990 kcal Electronic energy + Delta-G solvation = -29294.244292 eV Core-core repulsion = 25442.984651 eV Total energy + Delta-G solvation = -3851.259641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.02076 -39.89238 -37.53293 -36.60733 -34.24729 -33.63109 -32.43555 -31.21992 -31.16676 -30.13017 -28.82392 -27.96285 -25.14950 -23.99908 -23.81821 -22.69329 -22.14153 -21.51175 -20.91251 -19.07101 -18.42337 -17.39139 -16.75899 -16.47807 -16.26620 -15.55655 -14.96562 -14.85123 -14.57425 -14.44193 -14.06056 -13.84190 -13.72551 -13.46443 -13.17445 -13.14305 -13.04477 -12.90585 -12.82862 -12.47378 -12.37376 -12.13696 -11.69603 -11.56757 -11.44291 -11.31517 -11.12106 -10.87814 -10.67458 -10.65026 -10.59051 -10.46577 -9.94775 -9.62541 -9.53633 -9.07964 -8.75472 -8.66459 -8.29309 -8.10627 -6.60138 -5.47186 -2.75228 0.23093 0.63194 1.89410 2.52772 3.28225 3.55617 3.56378 3.59303 3.60686 3.99890 4.08045 4.44233 4.53708 4.56044 4.59047 4.70021 4.77092 4.86836 4.93821 4.99293 5.09521 5.17759 5.26548 5.31510 5.34008 5.37337 5.43896 5.55713 5.65537 5.74558 5.75473 5.78498 5.80358 5.87197 5.93265 5.99050 6.01400 6.07039 6.19907 6.24386 6.33606 6.43138 6.49268 6.62421 6.72739 6.84387 7.01622 7.79822 7.87734 7.94501 8.62637 8.81891 9.82950 10.48179 10.88632 11.73361 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009818 B = 0.003658 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.163179 B = 7652.912664 C = 9875.047249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.160 3.840 3 C -0.182 4.182 4 C -0.041 4.041 5 C -0.115 4.115 6 C -0.028 4.028 7 C -0.115 4.115 8 C 0.554 3.446 9 O -0.458 6.458 10 N -0.614 5.614 11 C 0.095 3.905 12 C -0.134 4.134 13 C -0.124 4.124 14 C 0.131 3.869 15 H 0.076 0.924 16 C 0.145 3.855 17 N -0.724 5.724 18 C -0.239 4.239 19 H 0.061 0.939 20 C -0.010 4.010 21 N -0.916 5.916 22 Si 0.897 3.103 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.289 1.289 26 C -0.085 4.085 27 C -0.107 4.107 28 C 0.145 3.855 29 N -0.481 5.481 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.017 0.983 43 H 0.019 0.981 44 H 0.400 0.600 45 H 0.249 0.751 46 H 0.146 0.854 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.228 -7.970 -12.702 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.007 3.993 3 C -0.202 4.202 4 C -0.067 4.067 5 C -0.117 4.117 6 C -0.048 4.048 7 C -0.119 4.119 8 C 0.341 3.659 9 O -0.328 6.328 10 N -0.351 5.351 11 C -0.028 4.028 12 C -0.172 4.172 13 C -0.163 4.163 14 C 0.028 3.972 15 H 0.094 0.906 16 C 0.016 3.984 17 N -0.375 5.375 18 C -0.371 4.371 19 H 0.079 0.921 20 C -0.207 4.207 21 N -0.564 5.564 22 Si 0.729 3.271 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.217 1.217 26 C -0.105 4.105 27 C -0.126 4.126 28 C 0.024 3.976 29 N -0.191 5.191 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.035 0.965 43 H 0.037 0.963 44 H 0.242 0.758 45 H 0.059 0.941 46 H 0.163 0.837 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.243 -8.166 -12.286 22.692 hybrid contribution 0.616 1.153 1.052 1.678 sum -16.627 -7.013 -11.233 21.257 Atomic orbital electron populations 1.20778 0.88699 1.03652 1.03195 1.21512 0.97096 0.88314 0.92356 1.21679 0.94974 0.99226 1.04299 1.21601 0.94479 0.97492 0.93096 1.18793 0.94396 0.94255 1.04302 1.21484 0.92200 0.98284 0.92830 1.20018 0.93776 0.93827 1.04235 1.17863 0.86594 0.82392 0.79014 1.90943 1.65198 1.34437 1.42250 1.48294 1.07850 1.17191 1.61762 1.22565 0.96289 0.88285 0.95642 1.22804 0.95018 1.00898 0.98484 1.22636 0.98242 0.96525 0.98866 1.21879 0.80621 0.96387 0.98271 0.90637 1.21018 0.96858 0.90287 0.90266 1.42849 1.84025 1.01207 1.09419 1.19101 1.39463 0.91556 0.86956 0.92128 1.24686 1.03111 0.95765 0.97117 1.69738 1.55621 0.97588 1.33465 0.86424 0.77990 0.76673 0.86003 1.21555 1.21843 1.21651 1.21584 0.93778 0.98848 0.96285 1.20615 0.93701 0.96331 1.01922 1.18931 0.88969 0.92971 0.96777 1.67864 1.08431 1.28712 1.14099 0.90183 0.90322 0.90514 0.84501 0.83907 0.83643 0.91398 0.90558 0.90057 0.90686 0.90322 0.90128 0.96533 0.96305 0.75793 0.94054 0.83699 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.14 36.01 0.37 -0.39 16 2 C 0.16 1.76 6.78 -82.49 -0.56 1.20 16 3 C -0.18 -1.83 9.64 -39.78 -0.38 -2.21 16 4 C -0.04 -0.48 9.89 -39.18 -0.39 -0.87 16 5 C -0.12 -1.65 5.74 -106.82 -0.61 -2.26 16 6 C -0.03 -0.45 9.34 -38.74 -0.36 -0.81 16 7 C -0.12 -1.89 5.70 -104.98 -0.60 -2.49 16 8 C 0.55 10.86 7.39 -12.37 -0.09 10.77 16 9 O -0.46 -11.46 13.08 5.31 0.07 -11.39 16 10 N -0.61 -10.07 3.06 -164.16 -0.50 -10.57 16 11 C 0.10 1.07 4.95 -2.52 -0.01 1.05 16 12 C -0.13 -1.25 7.08 -24.58 -0.17 -1.42 16 13 C -0.12 -1.45 6.43 -24.90 -0.16 -1.61 16 14 C 0.13 2.24 3.03 -66.96 -0.20 2.04 16 15 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 16 C 0.14 3.14 5.61 -4.04 -0.02 3.11 16 17 N -0.72 -20.13 4.51 -59.91 -0.27 -20.40 16 18 C -0.24 -7.27 9.99 -15.06 -0.15 -7.42 16 19 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 21 N -0.92 -29.81 13.06 55.49 0.72 -29.08 16 22 Si 0.90 23.90 29.55 -169.99 -5.02 18.87 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 25 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 26 C -0.09 -1.13 7.97 -39.59 -0.32 -1.45 16 27 C -0.11 -1.37 9.95 -39.54 -0.39 -1.77 16 28 C 0.14 2.06 6.61 -84.78 -0.56 1.50 16 29 N -0.48 -6.48 10.23 -7.16 -0.07 -6.55 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.15 2.38 7.79 -52.48 -0.41 1.97 16 36 H 0.07 0.68 6.82 -51.93 -0.35 0.33 16 37 H 0.08 0.76 6.74 -51.93 -0.35 0.41 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.87 7.86 -51.93 -0.41 0.47 16 41 H 0.08 0.84 8.14 -51.92 -0.42 0.41 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.41 8.08 -51.92 -0.42 -0.01 16 44 H 0.40 11.89 4.88 -40.82 -0.20 11.69 16 45 H 0.25 7.86 8.31 -40.82 -0.34 7.52 16 46 H 0.15 1.62 4.32 -52.49 -0.23 1.39 16 47 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -38.33 378.40 -10.65 -48.98 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.56 Total: 7.88 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -4.72 Total: -3.44 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -0.12 Total: -66.61 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.02 Total: 18.87 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.33 -10.65 -48.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753601740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.821 kcal (2) G-P(sol) polarization free energy of solvation -38.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds