Wall clock time and date at job start Tue Mar 31 2020 22:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36353 * 119.95535 * 2 1 4 4 C 1.38868 * 121.05710 * 180.02562 * 3 2 1 5 5 C 1.38750 * 120.72716 * 359.97438 * 4 3 2 6 6 C 1.47436 * 120.33280 * 179.97438 * 5 4 3 7 7 O 1.21599 * 120.00022 * 154.14239 * 6 5 4 8 8 N 1.34778 * 119.99917 * 334.13132 * 6 5 4 9 9 C 1.47421 * 125.64659 * 4.58542 * 8 6 5 10 10 C 1.54692 * 104.94283 * 204.06924 * 9 8 6 11 11 C 1.55161 * 101.67491 * 323.27856 * 10 9 8 12 12 C 1.47017 * 125.64690 * 184.88230 * 8 6 5 13 13 H 1.09000 * 109.88376 * 59.49762 * 12 8 6 14 14 C 1.52999 * 109.88814 * 298.32618 * 12 8 6 15 15 N 1.46501 * 109.46902 * 72.99698 * 14 12 8 16 16 C 1.36934 * 119.99782 * 187.39700 * 15 14 12 17 17 H 1.07995 * 120.00539 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99757 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00030 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99750 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47114 * 90.00295 * 20 18 16 22 22 H 1.48500 * 109.46871 * 210.00030 * 20 18 16 23 23 H 1.48496 * 109.47339 * 329.99898 * 20 18 16 24 24 C 1.41775 * 119.33102 * 359.97438 * 5 4 3 25 25 N 1.33357 * 121.04277 * 180.02562 * 24 5 4 26 26 C 1.31232 * 121.34749 * 180.02562 * 25 24 5 27 27 C 1.39229 * 121.69405 * 0.02562 * 26 25 24 28 28 C 1.36633 * 119.91568 * 359.97438 * 27 26 25 29 29 C 1.40443 * 119.96308 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47028 * 270.04097 * 1 2 3 31 31 H 1.08993 * 109.47322 * 30.04072 * 1 2 3 32 32 H 1.09006 * 109.46623 * 150.04410 * 1 2 3 33 33 H 1.07990 * 119.47263 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.64117 * 179.97438 * 4 3 2 35 35 H 1.08998 * 110.36854 * 322.99271 * 9 8 6 36 36 H 1.09000 * 110.37448 * 85.32091 * 9 8 6 37 37 H 1.08995 * 111.10971 * 205.10793 * 10 9 8 38 38 H 1.09003 * 110.85177 * 81.32493 * 10 9 8 39 39 H 1.09000 * 110.71928 * 276.97123 * 11 10 9 40 40 H 1.08998 * 110.72683 * 153.70061 * 11 10 9 41 41 H 1.09000 * 109.47187 * 192.99991 * 14 12 8 42 42 H 1.08997 * 109.46685 * 313.00160 * 14 12 8 43 43 H 0.96995 * 119.99924 * 7.39459 * 15 14 12 44 44 H 0.97002 * 120.00078 * 179.97438 * 19 18 16 45 45 H 1.08003 * 119.14866 * 180.28094 * 26 25 24 46 46 H 1.08001 * 120.04385 * 180.02562 * 27 26 25 47 47 H 1.07995 * 120.92274 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1814 0.0000 4 6 3.5763 1.2081 -0.0005 5 6 4.3080 0.0292 -0.0005 6 6 5.7819 0.0677 -0.0017 7 8 6.4147 -0.8635 0.4576 8 7 6.4277 1.1350 -0.5119 9 6 5.7903 2.3670 -1.0110 10 6 6.8094 2.9678 -2.0077 11 6 8.1582 2.6341 -1.3170 12 6 7.8841 1.2608 -0.6687 13 1 8.2576 0.4653 -1.3135 14 6 8.5632 1.1868 0.7003 15 7 8.5196 -0.1921 1.1932 16 6 8.9315 -0.4770 2.4677 17 1 9.2889 0.3147 3.1094 18 6 8.8897 -1.7835 2.9348 19 7 8.4546 -2.7485 2.1526 20 14 9.4523 -2.1723 4.6732 21 1 8.2987 -2.0662 5.6022 22 1 9.9997 -3.5519 4.7194 23 1 10.5057 -1.2079 5.0799 24 6 3.6241 -1.2127 0.0005 25 7 4.2933 -2.3662 0.0011 26 6 3.6664 -3.5191 0.0016 27 6 2.2762 -3.5958 0.0011 28 6 1.5306 -2.4509 0.0005 29 6 2.2084 -1.2167 0.0005 30 1 -0.3633 0.0007 1.0277 31 1 -0.3633 0.8895 -0.5144 32 1 -0.3633 -0.8905 -0.5132 33 1 1.6386 2.1112 -0.0004 34 1 4.0922 2.1568 -0.0009 35 1 4.8555 2.1314 -1.5196 36 1 5.6118 3.0614 -0.1899 37 1 6.6759 4.0453 -2.1040 38 1 6.7366 2.4788 -2.9791 39 1 8.3970 3.3784 -0.5573 40 1 8.9600 2.5606 -2.0517 41 1 9.6010 1.5074 0.6089 42 1 8.0416 1.8395 1.4003 43 1 8.1989 -0.9032 0.6168 44 1 8.4257 -3.6616 2.4790 45 1 4.2437 -4.4319 0.0066 46 1 1.7878 -4.5591 0.0019 47 1 0.4514 -2.4915 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754614772.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:32 Heat of formation + Delta-G solvation = 78.168330 kcal Electronic energy + Delta-G solvation = -30186.176203 eV Core-core repulsion = 26335.798065 eV Total energy + Delta-G solvation = -3850.378138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.96498 -39.53881 -37.17903 -36.72955 -34.42538 -33.66261 -31.72593 -31.05920 -30.72699 -30.42609 -28.63652 -27.36546 -25.02881 -24.16886 -23.56360 -23.17503 -21.99303 -21.10679 -20.51874 -18.71607 -18.30005 -17.13890 -16.87740 -16.48411 -16.19381 -15.48553 -14.75738 -14.59981 -14.52967 -14.13003 -14.03797 -13.75068 -13.44289 -13.31121 -13.27911 -13.17532 -13.08697 -12.79607 -12.61200 -12.30511 -12.11121 -11.90515 -11.61251 -11.36022 -11.31468 -11.29024 -11.01350 -10.70977 -10.60252 -10.51032 -10.36897 -10.26079 -9.83519 -9.42831 -9.16829 -8.71791 -8.57173 -8.49456 -8.03787 -7.92530 -6.41955 -5.32032 -2.59072 0.29464 0.90563 1.91872 2.86578 3.43916 3.62352 3.66376 3.68164 3.74324 4.33205 4.42932 4.48759 4.61595 4.71230 4.73958 4.79651 4.86458 4.91017 5.02635 5.06325 5.08579 5.24282 5.33668 5.35382 5.45109 5.46338 5.54094 5.62080 5.65426 5.79702 5.82764 5.92386 5.95009 5.95570 5.99797 6.07909 6.09522 6.20502 6.25985 6.34200 6.36874 6.54296 6.63614 6.79158 6.88386 6.96255 7.16679 7.99920 8.13595 8.27677 8.79441 9.12277 9.97460 10.65092 11.06643 11.87780 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009058 B = 0.004888 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.507792 B = 5727.489309 C = 7962.416176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.054 4.054 3 C -0.128 4.128 4 C -0.090 4.090 5 C -0.085 4.085 6 C 0.541 3.459 7 O -0.408 6.408 8 N -0.617 5.617 9 C 0.092 3.908 10 C -0.134 4.134 11 C -0.124 4.124 12 C 0.133 3.867 13 H 0.072 0.928 14 C 0.146 3.854 15 N -0.718 5.718 16 C -0.237 4.237 17 H 0.058 0.942 18 C -0.008 4.008 19 N -0.907 5.907 20 Si 0.892 3.108 21 H -0.295 1.295 22 H -0.294 1.294 23 H -0.286 1.286 24 C 0.163 3.837 25 N -0.424 5.424 26 C 0.132 3.868 27 C -0.174 4.174 28 C -0.069 4.069 29 C -0.107 4.107 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.015 0.985 42 H 0.016 0.984 43 H 0.402 0.598 44 H 0.246 0.754 45 H 0.160 0.840 46 H 0.135 0.865 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.185 9.610 -11.517 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.055 4.055 3 C -0.146 4.146 4 C -0.110 4.110 5 C -0.089 4.089 6 C 0.326 3.674 7 O -0.274 6.274 8 N -0.357 5.357 9 C -0.031 4.031 10 C -0.172 4.172 11 C -0.162 4.162 12 C 0.030 3.970 13 H 0.090 0.910 14 C 0.016 3.984 15 N -0.372 5.372 16 C -0.369 4.369 17 H 0.076 0.924 18 C -0.205 4.205 19 N -0.555 5.555 20 Si 0.724 3.276 21 H -0.223 1.223 22 H -0.221 1.221 23 H -0.212 1.212 24 C 0.040 3.960 25 N -0.130 5.130 26 C -0.041 4.041 27 C -0.194 4.194 28 C -0.095 4.095 29 C -0.110 4.110 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.147 0.853 34 H 0.164 0.836 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.032 0.968 42 H 0.034 0.966 43 H 0.246 0.754 44 H 0.057 0.943 45 H 0.177 0.823 46 H 0.153 0.847 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.863 9.050 -11.065 22.107 hybrid contribution -0.813 -0.411 1.072 1.407 sum -17.676 8.639 -9.993 22.066 Atomic orbital electron populations 1.20868 0.90789 1.03051 1.02714 1.19789 0.95964 0.92095 0.97622 1.20660 0.93901 0.97673 1.02340 1.21987 0.94135 0.98451 0.96455 1.20002 0.94199 0.91746 1.02980 1.17674 0.86169 0.83050 0.80499 1.91019 1.64825 1.33157 1.38398 1.48342 1.06762 1.15943 1.64633 1.22542 0.96914 0.87225 0.96459 1.22754 0.95125 1.00783 0.98518 1.22631 0.97303 0.96536 0.99767 1.21848 0.80256 0.96657 0.98222 0.91037 1.20955 0.95746 0.90402 0.91251 1.43006 1.77312 1.02546 1.14312 1.19097 1.34860 0.92282 0.90658 0.92408 1.24654 1.02575 0.96141 0.97126 1.69768 1.51986 0.99207 1.34544 0.86422 0.77957 0.77101 0.86129 1.22341 1.22077 1.21167 1.18653 0.88741 0.92174 0.96444 1.68366 1.38669 0.97177 1.08767 1.23206 0.91656 0.96615 0.92600 1.21965 0.95785 0.99385 1.02246 1.21406 1.00102 0.91371 0.96578 1.18642 0.93793 0.94241 1.04279 0.90673 0.91031 0.91232 0.85336 0.83609 0.90512 0.91736 0.90247 0.90842 0.90441 0.90288 0.96808 0.96601 0.75442 0.94335 0.82266 0.84701 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.53 36.01 0.34 -0.54 16 2 C -0.05 -0.62 5.89 -104.47 -0.62 -1.23 16 3 C -0.13 -1.42 9.57 -40.03 -0.38 -1.80 16 4 C -0.09 -1.22 7.93 -39.16 -0.31 -1.54 16 5 C -0.09 -1.56 5.76 -104.61 -0.60 -2.16 16 6 C 0.54 11.66 7.41 -12.51 -0.09 11.56 16 7 O -0.41 -11.10 11.57 5.28 0.06 -11.04 16 8 N -0.62 -10.98 3.07 -164.41 -0.50 -11.48 16 9 C 0.09 1.12 5.01 -2.65 -0.01 1.10 16 10 C -0.13 -1.35 7.07 -24.70 -0.17 -1.52 16 11 C -0.12 -1.55 6.46 -24.89 -0.16 -1.71 16 12 C 0.13 2.42 3.11 -66.95 -0.21 2.21 16 13 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 14 C 0.15 3.31 5.63 -4.04 -0.02 3.28 16 15 N -0.72 -20.74 4.11 -59.91 -0.25 -20.98 16 16 C -0.24 -7.44 9.99 -15.06 -0.15 -7.59 16 17 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.91 -30.38 13.06 55.49 0.72 -29.65 16 20 Si 0.89 24.55 29.55 -169.99 -5.02 19.53 16 21 H -0.30 -8.16 7.11 56.52 0.40 -7.76 16 22 H -0.29 -8.06 7.11 56.52 0.40 -7.66 16 23 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 24 C 0.16 3.02 6.59 -84.58 -0.56 2.47 16 25 N -0.42 -8.71 8.76 -10.76 -0.09 -8.80 16 26 C 0.13 2.13 11.15 -17.44 -0.19 1.93 16 27 C -0.17 -2.12 10.03 -39.79 -0.40 -2.52 16 28 C -0.07 -0.81 9.36 -39.19 -0.37 -1.18 16 29 C -0.11 -1.55 5.74 -106.82 -0.61 -2.16 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.07 0.45 6.42 -51.93 -0.33 0.12 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.15 1.66 4.37 -52.49 -0.23 1.43 16 35 H 0.08 0.83 6.00 -51.93 -0.31 0.51 16 36 H 0.06 0.71 7.38 -51.93 -0.38 0.33 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.01 0.32 8.12 -51.93 -0.42 -0.10 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.40 12.42 4.82 -40.91 -0.20 12.23 16 44 H 0.25 7.99 8.31 -40.82 -0.34 7.66 16 45 H 0.16 2.28 8.06 -52.48 -0.42 1.86 16 46 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 47 H 0.14 1.11 6.42 -52.49 -0.34 0.78 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -40.75 371.78 -10.49 -51.24 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.39 Total: 7.31 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -4.62 Total: -1.74 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -0.12 Total: -70.92 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.06 Total: -11.04 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.02 Total: 19.53 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -40.75 -10.49 -51.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754614772.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.410 kcal (2) G-P(sol) polarization free energy of solvation -40.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds