Wall clock time and date at job start Tue Mar 31 2020 22:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36353 * 119.95535 * 2 1 4 4 C 1.38868 * 121.05710 * 180.02562 * 3 2 1 5 5 C 1.38750 * 120.72716 * 359.97438 * 4 3 2 6 6 C 1.47436 * 120.33280 * 179.97438 * 5 4 3 7 7 O 1.21599 * 120.00022 * 154.14239 * 6 5 4 8 8 N 1.34778 * 119.99917 * 334.13132 * 6 5 4 9 9 C 1.47421 * 125.64659 * 4.58542 * 8 6 5 10 10 C 1.54692 * 104.94283 * 204.06924 * 9 8 6 11 11 C 1.55161 * 101.67491 * 323.27856 * 10 9 8 12 12 C 1.47017 * 125.64690 * 184.88230 * 8 6 5 13 13 H 1.09000 * 109.88376 * 59.49762 * 12 8 6 14 14 C 1.52999 * 109.88814 * 298.32618 * 12 8 6 15 15 N 1.46501 * 109.46902 * 72.99698 * 14 12 8 16 16 C 1.36934 * 119.99782 * 187.39700 * 15 14 12 17 17 H 1.07995 * 120.00539 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99757 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00030 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99750 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47114 * 90.00295 * 20 18 16 22 22 H 1.48500 * 109.46871 * 210.00030 * 20 18 16 23 23 H 1.48496 * 109.47339 * 329.99898 * 20 18 16 24 24 C 1.41775 * 119.33102 * 359.97438 * 5 4 3 25 25 N 1.33357 * 121.04277 * 180.02562 * 24 5 4 26 26 C 1.31232 * 121.34749 * 180.02562 * 25 24 5 27 27 C 1.39229 * 121.69405 * 0.02562 * 26 25 24 28 28 C 1.36633 * 119.91568 * 359.97438 * 27 26 25 29 29 C 1.40443 * 119.96308 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47028 * 270.04097 * 1 2 3 31 31 H 1.08993 * 109.47322 * 30.04072 * 1 2 3 32 32 H 1.09006 * 109.46623 * 150.04410 * 1 2 3 33 33 H 1.07990 * 119.47263 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.64117 * 179.97438 * 4 3 2 35 35 H 1.08998 * 110.36854 * 322.99271 * 9 8 6 36 36 H 1.09000 * 110.37448 * 85.32091 * 9 8 6 37 37 H 1.08995 * 111.10971 * 205.10793 * 10 9 8 38 38 H 1.09003 * 110.85177 * 81.32493 * 10 9 8 39 39 H 1.09000 * 110.71928 * 276.97123 * 11 10 9 40 40 H 1.08998 * 110.72683 * 153.70061 * 11 10 9 41 41 H 1.09000 * 109.47187 * 192.99991 * 14 12 8 42 42 H 1.08997 * 109.46685 * 313.00160 * 14 12 8 43 43 H 0.96995 * 119.99924 * 7.39459 * 15 14 12 44 44 H 0.97002 * 120.00078 * 179.97438 * 19 18 16 45 45 H 1.08003 * 119.14866 * 180.28094 * 26 25 24 46 46 H 1.08001 * 120.04385 * 180.02562 * 27 26 25 47 47 H 1.07995 * 120.92274 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1814 0.0000 4 6 3.5763 1.2081 -0.0005 5 6 4.3080 0.0292 -0.0005 6 6 5.7819 0.0677 -0.0017 7 8 6.4147 -0.8635 0.4576 8 7 6.4277 1.1350 -0.5119 9 6 5.7903 2.3670 -1.0110 10 6 6.8094 2.9678 -2.0077 11 6 8.1582 2.6341 -1.3170 12 6 7.8841 1.2608 -0.6687 13 1 8.2576 0.4653 -1.3135 14 6 8.5632 1.1868 0.7003 15 7 8.5196 -0.1921 1.1932 16 6 8.9315 -0.4770 2.4677 17 1 9.2889 0.3147 3.1094 18 6 8.8897 -1.7835 2.9348 19 7 8.4546 -2.7485 2.1526 20 14 9.4523 -2.1723 4.6732 21 1 8.2987 -2.0662 5.6022 22 1 9.9997 -3.5519 4.7194 23 1 10.5057 -1.2079 5.0799 24 6 3.6241 -1.2127 0.0005 25 7 4.2933 -2.3662 0.0011 26 6 3.6664 -3.5191 0.0016 27 6 2.2762 -3.5958 0.0011 28 6 1.5306 -2.4509 0.0005 29 6 2.2084 -1.2167 0.0005 30 1 -0.3633 0.0007 1.0277 31 1 -0.3633 0.8895 -0.5144 32 1 -0.3633 -0.8905 -0.5132 33 1 1.6386 2.1112 -0.0004 34 1 4.0922 2.1568 -0.0009 35 1 4.8555 2.1314 -1.5196 36 1 5.6118 3.0614 -0.1899 37 1 6.6759 4.0453 -2.1040 38 1 6.7366 2.4788 -2.9791 39 1 8.3970 3.3784 -0.5573 40 1 8.9600 2.5606 -2.0517 41 1 9.6010 1.5074 0.6089 42 1 8.0416 1.8395 1.4003 43 1 8.1989 -0.9032 0.6168 44 1 8.4257 -3.6616 2.4790 45 1 4.2437 -4.4319 0.0066 46 1 1.7878 -4.5591 0.0019 47 1 0.4514 -2.4915 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754614772.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:31 Heat of formation + Delta-G solvation = 49.171006 kcal Electronic energy + Delta-G solvation = -30187.433622 eV Core-core repulsion = 26335.798065 eV Total energy + Delta-G solvation = -3851.635557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.07675 -40.84389 -38.25629 -38.11582 -36.25773 -35.01528 -33.32995 -32.67220 -31.75863 -31.52809 -30.29550 -28.26803 -26.76038 -25.34572 -24.70063 -24.62416 -23.70172 -22.19095 -21.70068 -20.11992 -19.43217 -18.96432 -18.01878 -17.86391 -17.46829 -16.84550 -16.58020 -15.92183 -15.62999 -15.55712 -15.21802 -15.07253 -14.84071 -14.72057 -14.50226 -14.29699 -14.19384 -14.03644 -13.81206 -13.61188 -13.21697 -13.12025 -12.99109 -12.89039 -12.74894 -12.62531 -12.35231 -12.26429 -12.21622 -11.96714 -11.63483 -11.59895 -11.47538 -11.32663 -10.88517 -10.55391 -9.98680 -9.77822 -9.43684 -9.07313 -8.73173 -7.75448 -5.03579 -0.74628 -0.14815 0.84475 1.36788 1.41860 1.49728 1.84434 2.12948 2.36651 2.58734 3.16987 3.39222 3.47799 3.51245 3.65876 3.71010 3.80723 3.86518 3.96343 3.96608 4.04854 4.11659 4.27121 4.37740 4.43417 4.44793 4.48329 4.60634 4.67643 4.79398 4.82388 4.85668 4.87457 4.90750 4.93385 5.00003 5.01019 5.10720 5.16819 5.18541 5.23186 5.24715 5.40886 5.44953 5.48224 5.61168 5.71714 5.90240 6.38900 6.76270 7.15238 7.42818 7.65794 8.40526 8.68855 9.45098 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009058 B = 0.004888 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.507792 B = 5727.489309 C = 7962.416176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.037 4.037 3 C -0.132 4.132 4 C -0.066 4.066 5 C -0.143 4.143 6 C 0.529 3.471 7 O -0.487 6.487 8 N -0.619 5.619 9 C 0.082 3.918 10 C -0.118 4.118 11 C -0.113 4.113 12 C 0.132 3.868 13 H 0.039 0.961 14 C 0.144 3.856 15 N -0.735 5.735 16 C -0.248 4.248 17 H 0.061 0.939 18 C -0.075 4.075 19 N -0.946 5.946 20 Si 0.966 3.034 21 H -0.296 1.296 22 H -0.293 1.293 23 H -0.267 1.267 24 C 0.130 3.870 25 N -0.499 5.499 26 C 0.110 3.890 27 C -0.173 4.173 28 C -0.053 4.053 29 C -0.126 4.126 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.177 0.823 34 H 0.167 0.833 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.022 0.978 42 H 0.009 0.991 43 H 0.389 0.611 44 H 0.240 0.760 45 H 0.155 0.845 46 H 0.176 0.824 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.112 13.077 -12.042 28.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.038 4.038 3 C -0.149 4.149 4 C -0.086 4.086 5 C -0.147 4.147 6 C 0.317 3.683 7 O -0.358 6.358 8 N -0.357 5.357 9 C -0.039 4.039 10 C -0.155 4.155 11 C -0.151 4.151 12 C 0.028 3.972 13 H 0.057 0.943 14 C 0.016 3.984 15 N -0.387 5.387 16 C -0.380 4.380 17 H 0.079 0.921 18 C -0.268 4.268 19 N -0.595 5.595 20 Si 0.795 3.205 21 H -0.224 1.224 22 H -0.219 1.219 23 H -0.191 1.191 24 C 0.007 3.993 25 N -0.207 5.207 26 C -0.062 4.062 27 C -0.193 4.193 28 C -0.079 4.079 29 C -0.129 4.129 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.194 0.806 34 H 0.184 0.816 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.140 0.860 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.039 0.961 42 H 0.027 0.973 43 H 0.231 0.769 44 H 0.048 0.952 45 H 0.172 0.828 46 H 0.193 0.807 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -20.797 12.619 -11.625 26.961 hybrid contribution 0.299 -1.403 1.181 1.858 sum -20.499 11.216 -10.444 25.594 Atomic orbital electron populations 1.21021 0.87006 1.05168 1.04104 1.20381 0.98423 0.90855 0.94129 1.21165 0.92723 0.99637 1.01409 1.22306 0.95494 0.97414 0.93357 1.19952 0.92452 0.93773 1.08557 1.18458 0.87887 0.82691 0.79308 1.90950 1.66616 1.36044 1.42205 1.48471 1.06755 1.16942 1.63483 1.22938 0.98068 0.85115 0.97792 1.22781 0.92039 1.03199 0.97503 1.22624 0.99584 0.92669 1.00236 1.21822 0.80714 0.99380 0.95253 0.94258 1.21152 0.96431 0.87244 0.93596 1.43281 1.77017 1.04821 1.13542 1.19536 1.34003 0.92559 0.91928 0.92087 1.25555 1.03551 0.96047 1.01692 1.70023 1.53774 0.99122 1.36625 0.85255 0.77621 0.77031 0.80563 1.22382 1.21917 1.19140 1.19035 0.90937 0.91625 0.97714 1.68230 1.41521 0.99083 1.11841 1.23464 0.94074 0.95669 0.92982 1.22241 0.93758 1.01739 1.01556 1.21972 1.02176 0.89939 0.93791 1.19014 0.92265 0.96878 1.04709 0.89294 0.88423 0.89766 0.80614 0.81591 0.88806 0.89787 0.85973 0.90458 0.89240 0.88611 0.96069 0.97291 0.76894 0.95163 0.82799 0.80690 0.79713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.53 71.24 0.68 -0.38 16 2 C -0.04 -0.71 5.89 -19.77 -0.12 -0.83 16 3 C -0.13 -2.43 9.57 21.98 0.21 -2.22 16 4 C -0.07 -1.70 7.93 22.54 0.18 -1.52 16 5 C -0.14 -5.53 5.76 -19.86 -0.11 -5.64 16 6 C 0.53 24.80 7.41 86.67 0.64 25.44 16 7 O -0.49 -29.43 11.57 -4.03 -0.05 -29.48 16 8 N -0.62 -22.99 3.07 -792.33 -2.43 -25.42 16 9 C 0.08 1.83 5.01 86.78 0.43 2.27 16 10 C -0.12 -1.98 7.07 31.91 0.23 -1.75 16 11 C -0.11 -2.64 6.46 31.79 0.21 -2.43 16 12 C 0.13 5.04 3.11 45.34 0.14 5.19 16 13 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 14 C 0.14 6.89 5.63 86.38 0.49 7.37 16 15 N -0.73 -45.58 4.11 -343.46 -1.41 -46.99 16 16 C -0.25 -16.39 9.99 84.04 0.84 -15.55 16 17 H 0.06 3.87 7.83 -2.91 -0.02 3.85 16 18 C -0.08 -5.06 5.50 84.86 0.47 -4.59 16 19 N -0.95 -67.88 13.06 21.65 0.28 -67.60 16 20 Si 0.97 52.99 29.55 68.60 2.03 55.02 16 21 H -0.30 -16.12 7.11 99.48 0.71 -15.41 16 22 H -0.29 -15.83 7.11 99.48 0.71 -15.12 16 23 H -0.27 -13.63 7.11 99.48 0.71 -12.92 16 24 C 0.13 5.13 6.59 40.61 0.27 5.40 16 25 N -0.50 -22.88 8.76 -187.97 -1.65 -24.52 16 26 C 0.11 3.91 11.15 85.02 0.95 4.86 16 27 C -0.17 -4.17 10.03 22.13 0.22 -3.95 16 28 C -0.05 -1.14 9.36 22.52 0.21 -0.93 16 29 C -0.13 -3.53 5.74 -21.29 -0.12 -3.65 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.10 0.47 8.08 -2.39 -0.02 0.45 16 32 H 0.08 0.57 6.42 -2.38 -0.02 0.55 16 33 H 0.18 1.58 8.06 -2.92 -0.02 1.56 16 34 H 0.17 3.37 4.37 -2.91 -0.01 3.35 16 35 H 0.09 1.79 6.00 -2.39 -0.01 1.78 16 36 H 0.08 1.58 7.38 -2.39 -0.02 1.56 16 37 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.91 7.85 -2.39 -0.02 1.89 16 40 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.02 0.99 8.12 -2.39 -0.02 0.97 16 42 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.39 26.39 4.82 -94.13 -0.45 25.94 16 44 H 0.24 16.65 8.31 -92.71 -0.77 15.88 16 45 H 0.15 5.16 8.06 -2.91 -0.02 5.14 16 46 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 47 H 0.19 2.05 6.42 -2.91 -0.02 2.03 16 Total: -1.00 -103.86 371.78 3.13 -100.73 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.55 Total: 31.19 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.80 Total: 7.07 kcal Atomic # 7 Polarization: -159.33 SS G_CDS: -5.20 Total: -164.54 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.05 Total: -29.48 kcal Atomic # 14 Polarization: 52.99 SS G_CDS: 2.03 Total: 55.02 kcal Total: -103.86 3.13 -100.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754614772.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.902 kcal (2) G-P(sol) polarization free energy of solvation -103.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds