Wall clock time and date at job start Tue Mar 31 2020 22:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39318 * 119.11345 * 2 1 4 4 C 1.36581 * 119.90126 * 180.02562 * 3 2 1 5 5 C 1.40889 * 118.16099 * 0.02562 * 4 3 2 6 6 C 1.40180 * 121.22652 * 180.02562 * 5 4 3 7 7 C 1.38553 * 119.40652 * 179.97438 * 6 5 4 8 8 C 1.47765 * 119.80425 * 179.97438 * 7 6 5 9 9 O 1.21567 * 119.99985 * 344.13910 * 8 7 6 10 10 N 1.34770 * 119.99950 * 164.14136 * 8 7 6 11 11 C 1.47426 * 125.64739 * 355.57665 * 10 8 7 12 12 C 1.54907 * 104.93121 * 204.05084 * 11 10 8 13 13 C 1.55278 * 101.52852 * 323.13286 * 12 11 10 14 14 C 1.47022 * 125.64934 * 175.55063 * 10 8 7 15 15 H 1.09000 * 109.88192 * 59.39514 * 14 10 8 16 16 C 1.52996 * 109.88790 * 298.38146 * 14 10 8 17 17 N 1.46500 * 109.47191 * 75.69078 * 16 14 10 18 18 C 1.36937 * 119.99982 * 187.58637 * 17 16 14 19 19 H 1.07998 * 120.00101 * 14.70977 * 18 17 16 20 20 C 1.38810 * 119.99890 * 194.71345 * 18 17 16 21 21 N 1.31617 * 120.00018 * 195.75342 * 20 18 17 22 22 Si 1.86804 * 120.00055 * 15.75010 * 20 18 17 23 23 H 1.48500 * 109.46891 * 93.63895 * 22 20 18 24 24 H 1.48493 * 109.47311 * 213.63917 * 22 20 18 25 25 H 1.48500 * 109.46962 * 333.64347 * 22 20 18 26 26 C 1.40628 * 120.38992 * 0.25934 * 7 6 5 27 27 C 1.35708 * 120.91728 * 359.48906 * 26 7 6 28 28 C 1.40763 * 120.11489 * 0.48538 * 27 26 7 29 29 N 1.31117 * 119.11715 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46985 * 89.99721 * 1 2 3 31 31 H 1.08999 * 109.47125 * 210.00316 * 1 2 3 32 32 H 1.08997 * 109.47001 * 329.99975 * 1 2 3 33 33 H 1.07994 * 120.04584 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.91849 * 180.02562 * 4 3 2 35 35 H 1.08008 * 120.29574 * 0.02562 * 6 5 4 36 36 H 1.09002 * 110.37099 * 322.94968 * 11 10 8 37 37 H 1.09010 * 110.36774 * 85.16156 * 11 10 8 38 38 H 1.09007 * 111.00049 * 81.11976 * 12 11 10 39 39 H 1.08999 * 111.01264 * 204.97031 * 12 11 10 40 40 H 1.09010 * 110.61743 * 277.00604 * 13 12 11 41 41 H 1.08999 * 110.76205 * 153.77712 * 13 12 11 42 42 H 1.08998 * 109.47521 * 195.69345 * 16 14 10 43 43 H 1.09012 * 109.46672 * 315.69202 * 16 14 10 44 44 H 0.97001 * 119.99302 * 7.58187 * 17 16 14 45 45 H 0.97006 * 119.99721 * 179.97438 * 21 20 18 46 46 H 1.07990 * 119.54072 * 179.72365 * 26 7 6 47 47 H 1.07999 * 119.94241 * 180.26097 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2172 0.0000 4 6 3.5505 1.2359 -0.0005 5 6 4.2325 0.0031 -0.0016 6 6 5.6331 -0.0526 -0.0017 7 6 6.2649 -1.2857 -0.0022 8 6 7.7410 -1.3547 -0.0029 9 8 8.3953 -0.3714 -0.2906 10 7 8.3618 -2.5077 0.3155 11 6 7.6988 -3.7432 0.7710 12 6 8.7847 -4.5087 1.5675 13 6 10.0593 -4.1897 0.7398 14 6 9.8124 -2.7420 0.2658 15 1 10.3239 -2.0412 0.9256 16 6 10.3184 -2.5704 -1.1679 17 7 10.3805 -1.1441 -1.4964 18 6 10.6569 -0.7481 -2.7778 19 1 10.5951 -1.4594 -3.5881 20 6 11.0167 0.5676 -3.0352 21 7 10.9811 1.0307 -4.2667 22 14 11.5514 1.6810 -1.6338 23 1 13.0306 1.6433 -1.5085 24 1 11.1136 3.0723 -1.9123 25 1 10.9352 1.2123 -0.3666 26 6 5.5097 -2.4720 -0.0082 27 6 4.1532 -2.4350 -0.0032 28 6 3.4804 -1.1986 -0.0021 29 7 2.1450 -1.1455 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6312 2.1444 -0.0004 34 1 4.0926 2.1700 -0.0001 35 1 6.2146 0.8576 -0.0005 36 1 6.8530 -3.5044 1.4157 37 1 7.3684 -4.3337 -0.0837 38 1 8.8715 -4.1202 2.5823 39 1 8.5807 -5.5793 1.5769 40 1 10.1431 -4.8653 -0.1116 41 1 10.9500 -4.2440 1.3657 42 1 11.3130 -3.0074 -1.2569 43 1 9.6380 -3.0725 -1.8558 44 1 10.2257 -0.4803 -0.8063 45 1 11.2322 1.9503 -4.4465 46 1 6.0164 -3.4257 -0.0131 47 1 3.5888 -3.3558 -0.0036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754619493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:13 Heat of formation + Delta-G solvation = 65.113549 kcal Electronic energy + Delta-G solvation = -29326.550651 eV Core-core repulsion = 25475.606415 eV Total energy + Delta-G solvation = -3850.944236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.13342 -40.07221 -37.64934 -36.80165 -34.45394 -33.71608 -32.55900 -31.39468 -31.30671 -30.24546 -29.28641 -28.06398 -25.43759 -24.11275 -23.91441 -22.63270 -22.23524 -21.37401 -21.03066 -19.25268 -18.63969 -17.60385 -17.08075 -16.64490 -16.34014 -15.67172 -15.09176 -14.92907 -14.66045 -14.41791 -14.18054 -14.01914 -13.93698 -13.70351 -13.24617 -13.15916 -13.14389 -13.09770 -12.65670 -12.51704 -12.47176 -12.28049 -11.95669 -11.70390 -11.63719 -11.59877 -11.37482 -10.86357 -10.79793 -10.71983 -10.62165 -10.37476 -9.97186 -9.69540 -9.57578 -9.26803 -8.84296 -8.64724 -8.41935 -8.24370 -6.88358 -5.61059 -2.89820 0.13033 0.54252 1.79935 2.40631 3.10591 3.42220 3.57689 3.62707 3.69309 3.92699 3.98468 4.35582 4.40824 4.44830 4.49426 4.61679 4.73978 4.83464 4.84295 4.88359 4.98975 5.06711 5.18633 5.21753 5.26499 5.28555 5.30370 5.41777 5.58038 5.63552 5.67909 5.68347 5.70524 5.74726 5.83595 5.89068 5.89393 5.92208 6.08373 6.09784 6.20660 6.27915 6.32333 6.37332 6.62925 6.72634 6.86612 7.72423 7.74841 8.24716 8.51782 8.63419 9.53458 10.24004 10.49211 11.57505 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010753 B = 0.003673 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.209977 B = 7621.429133 C = 9606.467469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.163 3.837 3 C -0.181 4.181 4 C -0.041 4.041 5 C -0.117 4.117 6 C -0.026 4.026 7 C -0.120 4.120 8 C 0.566 3.434 9 O -0.488 6.488 10 N -0.610 5.610 11 C 0.090 3.910 12 C -0.134 4.134 13 C -0.124 4.124 14 C 0.127 3.873 15 H 0.074 0.926 16 C 0.146 3.854 17 N -0.745 5.745 18 C -0.236 4.236 19 H 0.077 0.923 20 C 0.009 3.991 21 N -0.932 5.932 22 Si 0.881 3.119 23 H -0.291 1.291 24 H -0.296 1.296 25 H -0.271 1.271 26 C -0.094 4.094 27 C -0.105 4.105 28 C 0.147 3.853 29 N -0.481 5.481 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.027 0.973 43 H 0.028 0.972 44 H 0.380 0.620 45 H 0.256 0.744 46 H 0.154 0.846 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.739 -9.038 15.506 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.010 3.990 3 C -0.201 4.201 4 C -0.067 4.067 5 C -0.119 4.119 6 C -0.046 4.046 7 C -0.124 4.124 8 C 0.354 3.646 9 O -0.361 6.361 10 N -0.346 5.346 11 C -0.033 4.033 12 C -0.172 4.172 13 C -0.162 4.162 14 C 0.024 3.976 15 H 0.092 0.908 16 C 0.018 3.982 17 N -0.396 5.396 18 C -0.366 4.366 19 H 0.095 0.905 20 C -0.186 4.186 21 N -0.580 5.580 22 Si 0.711 3.289 23 H -0.219 1.219 24 H -0.223 1.223 25 H -0.197 1.197 26 C -0.114 4.114 27 C -0.124 4.124 28 C 0.025 3.975 29 N -0.191 5.191 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.044 0.956 43 H 0.046 0.954 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.171 0.829 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.736 -9.252 15.107 25.785 hybrid contribution 0.773 1.691 0.647 1.969 sum -17.963 -7.560 15.755 25.061 Atomic orbital electron populations 1.20790 0.88612 1.03622 1.03373 1.21536 0.97157 0.88285 0.92051 1.21697 0.94962 0.99288 1.04128 1.21599 0.94518 0.97457 0.93092 1.18787 0.94335 0.94326 1.04447 1.21477 0.92275 0.98228 0.92570 1.19940 0.93436 0.93976 1.04999 1.17772 0.86621 0.82343 0.77818 1.90785 1.65556 1.34327 1.45463 1.48297 1.07590 1.11227 1.67515 1.22715 0.96421 0.86251 0.97894 1.22841 0.94855 1.00425 0.99098 1.22662 0.98126 0.95295 1.00161 1.21967 0.80362 0.96238 0.99036 0.90760 1.21036 0.97361 0.88670 0.91143 1.43138 1.85600 1.00901 1.09956 1.18945 1.37844 0.95442 0.84347 0.90493 1.24762 1.01536 0.96759 0.95588 1.69811 1.54113 1.15457 1.18604 0.86517 0.78383 0.80140 0.83813 1.21891 1.22319 1.19727 1.21866 0.93952 0.99211 0.96338 1.20648 0.93707 0.96375 1.01667 1.18955 0.89009 0.92970 0.96521 1.67876 1.08377 1.28721 1.14134 0.90036 0.90292 0.90487 0.84414 0.83904 0.83702 0.90013 0.90916 0.90645 0.89802 0.90060 0.89973 0.95556 0.95446 0.77989 0.93435 0.82918 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.14 36.01 0.37 -0.35 16 2 C 0.16 1.70 6.78 -82.50 -0.56 1.14 16 3 C -0.18 -1.72 9.64 -39.78 -0.38 -2.11 16 4 C -0.04 -0.45 9.89 -39.18 -0.39 -0.84 16 5 C -0.12 -1.59 5.74 -106.82 -0.61 -2.20 16 6 C -0.03 -0.39 9.34 -38.74 -0.36 -0.75 16 7 C -0.12 -1.86 5.80 -104.99 -0.61 -2.46 16 8 C 0.57 10.43 7.48 -12.37 -0.09 10.33 16 9 O -0.49 -11.38 12.93 5.31 0.07 -11.31 16 10 N -0.61 -9.38 3.07 -164.15 -0.50 -9.89 16 11 C 0.09 0.91 4.91 -2.53 -0.01 0.90 16 12 C -0.13 -1.12 7.10 -24.52 -0.17 -1.29 16 13 C -0.12 -1.33 6.44 -24.83 -0.16 -1.49 16 14 C 0.13 2.03 3.04 -66.95 -0.20 1.83 16 15 H 0.07 1.29 8.11 -51.93 -0.42 0.87 16 16 C 0.15 3.03 5.61 -4.04 -0.02 3.01 16 17 N -0.74 -19.68 3.94 -59.91 -0.24 -19.92 16 18 C -0.24 -7.27 10.41 -15.06 -0.16 -7.42 16 19 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 20 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 21 N -0.93 -31.20 13.97 55.49 0.78 -30.43 16 22 Si 0.88 24.56 28.20 -169.99 -4.79 19.76 16 23 H -0.29 -7.99 7.11 56.52 0.40 -7.58 16 24 H -0.30 -8.28 7.11 56.52 0.40 -7.88 16 25 H -0.27 -7.41 6.12 56.52 0.35 -7.06 16 26 C -0.09 -1.16 8.03 -39.59 -0.32 -1.48 16 27 C -0.11 -1.27 9.95 -39.53 -0.39 -1.66 16 28 C 0.15 1.99 6.61 -84.78 -0.56 1.43 16 29 N -0.48 -6.19 10.23 -7.17 -0.07 -6.26 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.15 2.21 7.70 -52.48 -0.40 1.81 16 36 H 0.08 0.72 6.25 -51.93 -0.32 0.39 16 37 H 0.07 0.66 7.10 -51.92 -0.37 0.29 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.83 7.85 -51.92 -0.41 0.43 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.54 8.09 -51.93 -0.42 0.12 16 43 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.38 10.30 3.29 -40.82 -0.13 10.17 16 45 H 0.26 8.15 8.31 -40.82 -0.34 7.81 16 46 H 0.15 1.52 3.71 -52.49 -0.19 1.33 16 47 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -39.34 374.63 -10.37 -49.71 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.51 Total: 5.90 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -4.74 Total: -3.22 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: -0.04 Total: -66.49 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.07 Total: -11.31 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -4.79 Total: 19.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.34 -10.37 -49.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754619493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.821 kcal (2) G-P(sol) polarization free energy of solvation -39.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds