Wall clock time and date at job start Tue Mar 31 2020 22:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39318 * 119.11345 * 2 1 4 4 C 1.36581 * 119.90126 * 180.02562 * 3 2 1 5 5 C 1.40889 * 118.16099 * 0.02562 * 4 3 2 6 6 C 1.40180 * 121.22652 * 180.02562 * 5 4 3 7 7 C 1.38553 * 119.40652 * 179.97438 * 6 5 4 8 8 C 1.47765 * 119.80425 * 179.97438 * 7 6 5 9 9 O 1.21567 * 119.99985 * 344.13910 * 8 7 6 10 10 N 1.34770 * 119.99950 * 164.14136 * 8 7 6 11 11 C 1.47426 * 125.64739 * 355.57665 * 10 8 7 12 12 C 1.54907 * 104.93121 * 204.05084 * 11 10 8 13 13 C 1.55278 * 101.52852 * 323.13286 * 12 11 10 14 14 C 1.47022 * 125.64934 * 175.55063 * 10 8 7 15 15 H 1.09000 * 109.88192 * 59.39514 * 14 10 8 16 16 C 1.52996 * 109.88790 * 298.38146 * 14 10 8 17 17 N 1.46500 * 109.47191 * 75.69078 * 16 14 10 18 18 C 1.36937 * 119.99982 * 187.58637 * 17 16 14 19 19 H 1.07998 * 120.00101 * 14.70977 * 18 17 16 20 20 C 1.38810 * 119.99890 * 194.71345 * 18 17 16 21 21 N 1.31617 * 120.00018 * 195.75342 * 20 18 17 22 22 Si 1.86804 * 120.00055 * 15.75010 * 20 18 17 23 23 H 1.48500 * 109.46891 * 93.63895 * 22 20 18 24 24 H 1.48493 * 109.47311 * 213.63917 * 22 20 18 25 25 H 1.48500 * 109.46962 * 333.64347 * 22 20 18 26 26 C 1.40628 * 120.38992 * 0.25934 * 7 6 5 27 27 C 1.35708 * 120.91728 * 359.48906 * 26 7 6 28 28 C 1.40763 * 120.11489 * 0.48538 * 27 26 7 29 29 N 1.31117 * 119.11715 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46985 * 89.99721 * 1 2 3 31 31 H 1.08999 * 109.47125 * 210.00316 * 1 2 3 32 32 H 1.08997 * 109.47001 * 329.99975 * 1 2 3 33 33 H 1.07994 * 120.04584 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.91849 * 180.02562 * 4 3 2 35 35 H 1.08008 * 120.29574 * 0.02562 * 6 5 4 36 36 H 1.09002 * 110.37099 * 322.94968 * 11 10 8 37 37 H 1.09010 * 110.36774 * 85.16156 * 11 10 8 38 38 H 1.09007 * 111.00049 * 81.11976 * 12 11 10 39 39 H 1.08999 * 111.01264 * 204.97031 * 12 11 10 40 40 H 1.09010 * 110.61743 * 277.00604 * 13 12 11 41 41 H 1.08999 * 110.76205 * 153.77712 * 13 12 11 42 42 H 1.08998 * 109.47521 * 195.69345 * 16 14 10 43 43 H 1.09012 * 109.46672 * 315.69202 * 16 14 10 44 44 H 0.97001 * 119.99302 * 7.58187 * 17 16 14 45 45 H 0.97006 * 119.99721 * 179.97438 * 21 20 18 46 46 H 1.07990 * 119.54072 * 179.72365 * 26 7 6 47 47 H 1.07999 * 119.94241 * 180.26097 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2172 0.0000 4 6 3.5505 1.2359 -0.0005 5 6 4.2325 0.0031 -0.0016 6 6 5.6331 -0.0526 -0.0017 7 6 6.2649 -1.2857 -0.0022 8 6 7.7410 -1.3547 -0.0029 9 8 8.3953 -0.3714 -0.2906 10 7 8.3618 -2.5077 0.3155 11 6 7.6988 -3.7432 0.7710 12 6 8.7847 -4.5087 1.5675 13 6 10.0593 -4.1897 0.7398 14 6 9.8124 -2.7420 0.2658 15 1 10.3239 -2.0412 0.9256 16 6 10.3184 -2.5704 -1.1679 17 7 10.3805 -1.1441 -1.4964 18 6 10.6569 -0.7481 -2.7778 19 1 10.5951 -1.4594 -3.5881 20 6 11.0167 0.5676 -3.0352 21 7 10.9811 1.0307 -4.2667 22 14 11.5514 1.6810 -1.6338 23 1 13.0306 1.6433 -1.5085 24 1 11.1136 3.0723 -1.9123 25 1 10.9352 1.2123 -0.3666 26 6 5.5097 -2.4720 -0.0082 27 6 4.1532 -2.4350 -0.0032 28 6 3.4804 -1.1986 -0.0021 29 7 2.1450 -1.1455 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6312 2.1444 -0.0004 34 1 4.0926 2.1700 -0.0001 35 1 6.2146 0.8576 -0.0005 36 1 6.8530 -3.5044 1.4157 37 1 7.3684 -4.3337 -0.0837 38 1 8.8715 -4.1202 2.5823 39 1 8.5807 -5.5793 1.5769 40 1 10.1431 -4.8653 -0.1116 41 1 10.9500 -4.2440 1.3657 42 1 11.3130 -3.0074 -1.2569 43 1 9.6380 -3.0725 -1.8558 44 1 10.2257 -0.4803 -0.8063 45 1 11.2322 1.9503 -4.4465 46 1 6.0164 -3.4257 -0.0131 47 1 3.5888 -3.3558 -0.0036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754619493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:12 Heat of formation + Delta-G solvation = 38.538978 kcal Electronic energy + Delta-G solvation = -29327.703011 eV Core-core repulsion = 25475.606415 eV Total energy + Delta-G solvation = -3852.096596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.11846 -41.20520 -38.75360 -37.96679 -36.40616 -34.62341 -33.85101 -33.24177 -32.26279 -31.23488 -30.75502 -28.92073 -26.94484 -25.37879 -24.80689 -24.07896 -23.15201 -22.93134 -21.99022 -20.54220 -19.89834 -19.32459 -18.27009 -17.75495 -17.34004 -16.81442 -16.60556 -16.29861 -15.80474 -15.67399 -15.49801 -15.25605 -14.92855 -14.88790 -14.76726 -14.39930 -14.09315 -14.02273 -13.87984 -13.75024 -13.68335 -13.46198 -13.11696 -13.06092 -12.96608 -12.73785 -12.54555 -12.29593 -12.14606 -11.99452 -11.78341 -11.72881 -11.58983 -11.51872 -10.93144 -10.86909 -10.57363 -9.77324 -9.69261 -9.31116 -9.11301 -8.07705 -5.32504 -0.84577 -0.38156 0.81557 1.30656 1.34545 1.40283 1.47070 1.93726 2.24167 2.49194 2.99381 3.12548 3.21247 3.39561 3.50414 3.53418 3.65443 3.69923 3.81118 3.91707 3.98400 4.01242 4.16063 4.22288 4.28055 4.34664 4.39253 4.54171 4.64273 4.72495 4.76758 4.79481 4.80575 4.83470 4.85457 4.92145 4.97726 5.01854 5.10941 5.16442 5.17249 5.19170 5.21294 5.39560 5.46662 5.53876 5.73236 5.76997 6.19988 6.52025 6.84537 7.07791 7.25138 7.98691 8.20593 9.14536 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010753 B = 0.003673 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.209977 B = 7621.429133 C = 9606.467469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.159 3.841 3 C -0.170 4.170 4 C -0.056 4.056 5 C -0.134 4.134 6 C -0.041 4.041 7 C -0.140 4.140 8 C 0.556 3.444 9 O -0.555 6.555 10 N -0.609 5.609 11 C 0.077 3.923 12 C -0.118 4.118 13 C -0.115 4.115 14 C 0.127 3.873 15 H 0.057 0.943 16 C 0.141 3.859 17 N -0.750 5.750 18 C -0.226 4.226 19 H 0.044 0.956 20 C -0.056 4.056 21 N -0.978 5.978 22 Si 0.951 3.049 23 H -0.278 1.278 24 H -0.297 1.297 25 H -0.268 1.268 26 C -0.091 4.091 27 C -0.101 4.101 28 C 0.130 3.870 29 N -0.502 5.502 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.176 0.824 34 H 0.157 0.843 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.121 0.879 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.037 0.963 43 H 0.017 0.983 44 H 0.378 0.622 45 H 0.256 0.744 46 H 0.179 0.821 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.024 -10.836 18.029 29.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.006 3.994 3 C -0.190 4.190 4 C -0.082 4.082 5 C -0.136 4.136 6 C -0.060 4.060 7 C -0.143 4.143 8 C 0.346 3.654 9 O -0.433 6.433 10 N -0.343 5.343 11 C -0.043 4.043 12 C -0.156 4.156 13 C -0.153 4.153 14 C 0.023 3.977 15 H 0.075 0.925 16 C 0.014 3.986 17 N -0.401 5.401 18 C -0.358 4.358 19 H 0.062 0.938 20 C -0.247 4.247 21 N -0.628 5.628 22 Si 0.780 3.220 23 H -0.205 1.205 24 H -0.224 1.224 25 H -0.194 1.194 26 C -0.110 4.110 27 C -0.119 4.119 28 C 0.009 3.991 29 N -0.213 5.213 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.193 0.807 34 H 0.174 0.826 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.119 0.881 42 H 0.055 0.945 43 H 0.035 0.965 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.195 0.805 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -21.034 -11.143 17.683 29.653 hybrid contribution 1.281 2.203 -0.176 2.554 sum -19.753 -8.940 17.508 27.868 Atomic orbital electron populations 1.20921 0.85736 1.05031 1.04442 1.22302 0.99082 0.88028 0.89955 1.22127 0.94343 1.00623 1.01877 1.21893 0.95593 0.97252 0.93454 1.18939 0.93626 0.95781 1.05302 1.21463 0.93209 0.97774 0.93600 1.19897 0.91997 0.95408 1.07008 1.18355 0.87811 0.82339 0.76914 1.90715 1.67010 1.36732 1.48878 1.48440 1.07780 1.12032 1.66052 1.23131 0.97615 0.84345 0.99248 1.22869 0.92012 1.02292 0.98423 1.22676 1.00343 0.91141 1.01144 1.21972 0.80728 0.99659 0.95331 0.92498 1.21276 0.97790 0.85275 0.94284 1.43236 1.85232 1.03543 1.08092 1.18972 1.36328 0.94915 0.85572 0.93757 1.25484 1.02602 0.98549 0.98111 1.69954 1.56100 1.15982 1.20783 0.85424 0.78269 0.77735 0.80604 1.20494 1.22384 1.19351 1.22009 0.94010 0.98890 0.96093 1.20950 0.93603 0.96949 1.00392 1.19278 0.89705 0.93432 0.96699 1.67966 1.07833 1.29998 1.15478 0.88897 0.90258 0.87761 0.80697 0.82551 0.85482 0.88187 0.89162 0.89925 0.86090 0.89206 0.88131 0.94539 0.96492 0.78253 0.93511 0.80456 0.81872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.14 71.24 0.72 -0.34 16 2 C 0.16 2.96 6.78 42.93 0.29 3.25 16 3 C -0.17 -2.86 9.64 22.14 0.21 -2.65 16 4 C -0.06 -1.23 9.89 22.53 0.22 -1.01 16 5 C -0.13 -3.72 5.74 -21.29 -0.12 -3.84 16 6 C -0.04 -1.30 9.34 22.82 0.21 -1.09 16 7 C -0.14 -4.47 5.80 -20.10 -0.12 -4.59 16 8 C 0.56 21.31 7.48 86.76 0.65 21.96 16 9 O -0.55 -27.48 12.93 -3.93 -0.05 -27.53 16 10 N -0.61 -18.50 3.07 -791.51 -2.43 -20.93 16 11 C 0.08 1.35 4.91 86.85 0.43 1.78 16 12 C -0.12 -1.46 7.10 32.03 0.23 -1.23 16 13 C -0.11 -2.11 6.44 31.83 0.21 -1.90 16 14 C 0.13 3.98 3.04 45.34 0.14 4.12 16 15 H 0.06 1.99 8.11 -2.39 -0.02 1.97 16 16 C 0.14 5.93 5.61 86.38 0.48 6.42 16 17 N -0.75 -41.05 3.94 -343.45 -1.35 -42.40 16 18 C -0.23 -14.58 10.41 84.03 0.87 -13.71 16 19 H 0.04 3.07 8.06 -2.91 -0.02 3.05 16 20 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 21 N -0.98 -68.03 13.97 21.65 0.30 -67.72 16 22 Si 0.95 52.91 28.20 68.60 1.93 54.85 16 23 H -0.28 -14.76 7.11 99.48 0.71 -14.05 16 24 H -0.30 -16.40 7.11 99.48 0.71 -15.70 16 25 H -0.27 -14.62 6.12 99.48 0.61 -14.02 16 26 C -0.09 -2.15 8.03 22.27 0.18 -1.98 16 27 C -0.10 -2.28 9.95 22.30 0.22 -2.06 16 28 C 0.13 3.44 6.61 40.36 0.27 3.71 16 29 N -0.50 -12.16 10.23 -176.58 -1.81 -13.96 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.51 8.07 -2.39 -0.02 0.49 16 33 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.13 4.36 7.70 -2.91 -0.02 4.33 16 36 H 0.10 1.44 6.25 -2.39 -0.01 1.43 16 37 H 0.09 1.32 7.10 -2.38 -0.02 1.30 16 38 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.09 1.54 7.85 -2.38 -0.02 1.52 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.04 1.48 8.09 -2.39 -0.02 1.46 16 43 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.38 21.20 3.29 -92.71 -0.30 20.89 16 45 H 0.26 16.90 8.31 -92.70 -0.77 16.13 16 46 H 0.18 3.12 3.71 -2.92 -0.01 3.10 16 47 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -92.35 374.63 2.76 -89.59 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.60 Total: 24.46 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 5.56 Total: 3.65 kcal Atomic # 7 Polarization: -139.73 SS G_CDS: -5.28 Total: -145.02 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.05 Total: -27.53 kcal Atomic # 14 Polarization: 52.91 SS G_CDS: 1.93 Total: 54.85 kcal Total: -92.35 2.76 -89.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754619493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.128 kcal (2) G-P(sol) polarization free energy of solvation -92.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds