Wall clock time and date at job start Tue Mar 31 2020 22:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.88588 * 2 1 4 4 C 1.34777 * 119.99929 * 59.29329 * 3 2 1 5 5 O 1.21289 * 120.00240 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99955 * 179.72278 * 4 3 2 7 7 C 1.50702 * 109.47093 * 180.27645 * 6 4 3 8 8 C 1.36247 * 120.26203 * 265.00468 * 7 6 4 9 9 C 1.39335 * 121.02423 * 179.97438 * 8 7 6 10 10 C 1.36206 * 121.07992 * 359.95613 * 9 8 7 11 11 C 1.40331 * 119.51587 * 0.02562 * 10 9 8 12 12 C 1.40443 * 122.07688 * 179.97438 * 11 10 9 13 13 N 1.31244 * 119.87879 * 180.02562 * 12 11 10 14 14 C 1.32614 * 122.78176 * 0.02562 * 13 12 11 15 15 C 1.36167 * 121.88057 * 359.97438 * 14 13 12 16 16 C 1.40192 * 120.25576 * 84.72374 * 7 6 4 17 17 C 1.55154 * 111.00760 * 236.11574 * 2 1 3 18 18 C 1.54427 * 102.89416 * 206.40602 * 17 2 1 19 19 N 1.47015 * 107.28078 * 22.19129 * 18 17 2 20 20 C 1.36937 * 125.64833 * 181.02299 * 19 18 17 21 21 H 1.08001 * 119.99828 * 173.93980 * 20 19 18 22 22 C 1.38812 * 120.00075 * 353.94137 * 20 19 18 23 23 N 1.31622 * 119.99689 * 6.83153 * 22 20 19 24 24 Si 1.86799 * 120.00173 * 186.82765 * 22 20 19 25 25 H 1.48510 * 109.46793 * 94.98504 * 24 22 20 26 26 H 1.48498 * 109.47453 * 214.98500 * 24 22 20 27 27 H 1.48496 * 109.47371 * 334.98948 * 24 22 20 28 28 C 1.47423 * 108.70384 * 1.05696 * 19 18 17 29 29 H 1.09006 * 109.46983 * 60.70600 * 1 2 3 30 30 H 1.09003 * 109.46983 * 180.69264 * 1 2 3 31 31 H 1.08999 * 109.47374 * 300.70169 * 1 2 3 32 32 H 0.97001 * 120.00275 * 239.29460 * 3 2 1 33 33 H 1.09000 * 109.47510 * 300.27749 * 6 4 3 34 34 H 1.08997 * 109.46802 * 60.28089 * 6 4 3 35 35 H 1.08005 * 119.49256 * 359.97228 * 8 7 6 36 36 H 1.07994 * 119.45968 * 179.97438 * 9 8 7 37 37 H 1.08003 * 120.24211 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.05937 * 0.04392 * 12 11 10 39 39 H 1.08000 * 119.05591 * 179.97438 * 14 13 12 40 40 H 1.08005 * 120.66332 * 180.02562 * 15 14 13 41 41 H 1.08992 * 110.72385 * 324.75380 * 17 2 1 42 42 H 1.09007 * 110.71507 * 88.02391 * 17 2 1 43 43 H 1.08998 * 109.87936 * 262.76667 * 18 17 2 44 44 H 1.08999 * 109.87609 * 141.61072 * 18 17 2 45 45 H 0.96996 * 119.99670 * 180.02562 * 23 22 20 46 46 H 1.09001 * 110.36597 * 217.03406 * 28 19 18 47 47 H 1.08998 * 110.36506 * 94.71299 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7357 2.2108 1.0036 5 8 1.0187 1.8353 1.9069 6 6 2.2780 3.6169 1.0068 7 6 1.7836 4.3431 2.2312 8 6 0.6681 5.1224 2.1637 9 6 0.1967 5.8005 3.2860 10 6 0.8356 5.7048 4.4851 11 6 1.9878 4.9110 4.5932 12 6 2.6887 4.7746 5.8025 13 7 3.7620 4.0211 5.8547 14 6 4.2317 3.3664 4.8014 15 6 3.6250 3.4330 3.5841 16 6 2.4647 4.2175 3.4501 17 6 2.0862 -0.8075 -1.2024 18 6 3.4684 -1.2732 -0.6950 19 7 3.4275 -1.2419 0.7743 20 6 4.4642 -1.5649 1.6086 21 1 4.3663 -1.4166 2.6739 22 6 5.6409 -2.0828 1.0851 23 7 5.8128 -2.1383 -0.2186 24 14 6.9805 -2.7008 2.2310 25 1 6.8346 -4.1668 2.4178 26 1 8.3111 -2.4070 1.6409 27 1 6.8606 -2.0200 3.5453 28 6 2.0852 -0.8062 1.2006 29 1 -0.3633 0.5029 -0.8963 30 1 -0.3633 -1.0276 0.0124 31 1 -0.3634 0.5247 0.8836 32 1 2.6260 1.6690 -0.7223 33 1 3.3675 3.5861 1.0178 34 1 1.9382 4.1393 0.1126 35 1 0.1409 5.2161 1.2257 36 1 -0.6898 6.4117 3.2038 37 1 0.4586 6.2366 5.3462 38 1 2.3449 5.2885 6.6880 39 1 5.1207 2.7633 4.9122 40 1 4.0242 2.8912 2.7394 41 1 1.4473 -1.6630 -1.4211 42 1 2.1916 -0.1693 -2.0798 43 1 4.2433 -0.5984 -1.0587 44 1 3.6667 -2.2883 -1.0388 45 1 6.6348 -2.5006 -0.5844 46 1 2.1553 -0.1714 2.0839 47 1 1.4523 -1.6702 1.4026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754676045.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:20 Heat of formation + Delta-G solvation = 45.455140 kcal Electronic energy + Delta-G solvation = -29842.871127 eV Core-core repulsion = 25991.074438 eV Total energy + Delta-G solvation = -3851.796689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.00275 -39.75181 -37.73392 -37.02157 -33.99000 -33.81046 -31.99607 -31.32210 -30.59159 -29.92459 -28.70053 -27.49690 -25.67138 -24.20613 -23.68812 -23.59423 -21.91071 -20.51171 -20.00886 -19.02687 -18.04999 -17.29425 -16.99139 -16.73822 -16.50888 -15.56694 -15.14743 -14.69749 -14.65203 -14.44407 -14.25159 -13.83336 -13.79462 -13.68866 -13.35191 -13.25710 -12.80204 -12.68883 -12.33598 -12.04241 -11.97006 -11.91566 -11.81148 -11.66503 -11.59009 -11.03381 -10.92353 -10.87494 -10.40597 -10.37542 -10.13075 -10.06636 -10.00307 -9.66457 -9.46591 -9.28651 -9.05834 -8.64277 -8.52929 -8.02144 -6.80057 -5.73077 -3.03792 0.34149 0.91002 1.89104 2.93875 2.99603 3.40192 3.46699 3.47713 3.54272 4.10894 4.33098 4.47774 4.50603 4.60149 4.72130 4.84834 4.95020 5.00008 5.07064 5.20415 5.22486 5.33084 5.37890 5.39723 5.45694 5.60243 5.65538 5.72043 5.76983 5.80085 5.96772 6.01041 6.03161 6.12989 6.14878 6.28337 6.35171 6.38773 6.44978 6.53575 6.63987 6.67022 6.79316 6.81756 7.13176 7.50594 7.58194 7.79294 7.89718 8.00546 8.25307 8.58261 9.22719 9.82984 10.49619 11.39362 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010934 B = 0.004059 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.305341 B = 6897.316958 C = 8881.381837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 N -0.702 5.702 4 C 0.517 3.483 5 O -0.530 6.530 6 C -0.109 4.109 7 C -0.047 4.047 8 C -0.093 4.093 9 C -0.117 4.117 10 C -0.092 4.092 11 C -0.112 4.112 12 C 0.138 3.862 13 N -0.488 5.488 14 C 0.076 3.924 15 C -0.142 4.142 16 C -0.007 4.007 17 C -0.147 4.147 18 C 0.178 3.822 19 N -0.603 5.603 20 C -0.222 4.222 21 H 0.076 0.924 22 C -0.007 4.007 23 N -0.922 5.922 24 Si 0.907 3.093 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.133 3.867 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.398 0.602 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.160 0.840 39 H 0.154 0.846 40 H 0.138 0.862 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.046 0.954 45 H 0.251 0.749 46 H 0.051 0.949 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.614 16.928 0.790 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.071 3.929 3 N -0.353 5.353 4 C 0.303 3.697 5 O -0.407 6.407 6 C -0.149 4.149 7 C -0.047 4.047 8 C -0.112 4.112 9 C -0.135 4.135 10 C -0.112 4.112 11 C -0.114 4.114 12 C -0.034 4.034 13 N -0.196 5.196 14 C -0.067 4.067 15 C -0.162 4.162 16 C -0.012 4.012 17 C -0.185 4.185 18 C 0.053 3.947 19 N -0.329 5.329 20 C -0.351 4.351 21 H 0.093 0.907 22 C -0.203 4.203 23 N -0.570 5.570 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.006 3.994 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.232 0.768 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.177 0.823 39 H 0.172 0.828 40 H 0.156 0.844 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -10.334 16.364 2.145 19.473 hybrid contribution 0.649 -0.324 -0.738 1.035 sum -9.685 16.040 1.407 18.790 Atomic orbital electron populations 1.22002 0.94420 1.02121 1.02313 1.21471 0.92531 0.80833 0.98099 1.45808 1.51588 1.12267 1.25596 1.20198 0.81042 0.86463 0.82025 1.90684 1.37271 1.77365 1.35385 1.20729 1.03144 0.93789 0.97208 1.19043 0.95685 0.96858 0.93137 1.20776 0.95062 0.96355 0.99000 1.20823 1.00036 0.99854 0.92776 1.20920 0.94238 0.97866 0.98138 1.18983 0.97714 0.99820 0.94844 1.23140 0.90334 0.94191 0.95763 1.67411 1.12961 1.07037 1.32149 1.22205 0.99612 0.96715 0.88147 1.21995 0.95431 0.98770 0.99980 1.17945 0.94743 0.95517 0.92979 1.23242 1.00513 0.98898 0.95885 1.21168 0.89871 0.99932 0.83755 1.44433 1.07534 1.79186 1.01730 1.19050 0.91882 1.34709 0.89436 0.90661 1.24765 0.98128 1.01444 0.95959 1.69959 1.26374 1.51237 1.09438 0.86170 0.81293 0.78992 0.79815 1.21656 1.21815 1.20621 1.21856 0.87557 0.94860 0.95085 0.93264 0.91981 0.90778 0.76840 0.87704 0.87904 0.85810 0.85708 0.85177 0.82270 0.82842 0.84375 0.90935 0.91793 0.94043 0.93599 0.93874 0.93038 0.95854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.57 37.16 0.32 -1.96 16 2 C 0.16 2.71 0.82 -129.67 -0.11 2.60 16 3 N -0.70 -10.70 5.18 -45.62 -0.24 -10.94 16 4 C 0.52 7.96 7.20 -10.98 -0.08 7.88 16 5 O -0.53 -10.02 12.84 5.55 0.07 -9.95 16 6 C -0.11 -1.27 5.28 -29.03 -0.15 -1.42 16 7 C -0.05 -0.60 4.38 -104.60 -0.46 -1.06 16 8 C -0.09 -1.01 9.58 -39.89 -0.38 -1.39 16 9 C -0.12 -1.13 9.94 -39.90 -0.40 -1.53 16 10 C -0.09 -0.93 9.81 -39.53 -0.39 -1.32 16 11 C -0.11 -1.43 5.74 -106.86 -0.61 -2.05 16 12 C 0.14 1.72 11.05 -16.97 -0.19 1.53 16 13 N -0.49 -7.25 10.30 -13.15 -0.14 -7.38 16 14 C 0.08 1.14 11.07 -17.96 -0.20 0.94 16 15 C -0.14 -2.14 9.36 -39.40 -0.37 -2.51 16 16 C -0.01 -0.09 5.75 -106.81 -0.61 -0.71 16 17 C -0.15 -2.54 5.99 -24.84 -0.15 -2.69 16 18 C 0.18 4.10 5.37 -3.01 -0.02 4.09 16 19 N -0.60 -15.19 3.39 -170.02 -0.58 -15.77 16 20 C -0.22 -6.21 10.26 -15.06 -0.15 -6.37 16 21 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 22 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 23 N -0.92 -26.54 10.36 55.49 0.58 -25.97 16 24 Si 0.91 22.21 29.56 -169.99 -5.02 17.18 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.13 2.91 6.13 -2.53 -0.02 2.89 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 31 H 0.07 1.24 6.23 -51.93 -0.32 0.92 16 32 H 0.40 5.24 8.50 -40.82 -0.35 4.90 16 33 H 0.10 1.16 6.79 -51.93 -0.35 0.81 16 34 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 35 H 0.12 1.07 8.05 -52.48 -0.42 0.64 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 39 H 0.15 2.10 8.06 -52.49 -0.42 1.67 16 40 H 0.14 2.07 6.65 -52.48 -0.35 1.72 16 41 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 42 H 0.06 0.94 8.07 -51.92 -0.42 0.52 16 43 H 0.04 1.04 7.55 -51.93 -0.39 0.64 16 44 H 0.05 1.20 7.37 -51.93 -0.38 0.81 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.05 1.22 6.58 -51.93 -0.34 0.88 16 47 H 0.02 0.53 8.03 -51.93 -0.42 0.11 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -34.10 379.28 -10.33 -44.43 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.66 Total: 6.01 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -4.06 Total: -3.34 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.37 Total: -60.06 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.10 -10.33 -44.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754676045.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.890 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds