Wall clock time and date at job start Tue Mar 31 2020 22:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.88588 * 2 1 4 4 C 1.34777 * 119.99929 * 59.29329 * 3 2 1 5 5 O 1.21289 * 120.00240 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99955 * 179.72278 * 4 3 2 7 7 C 1.50702 * 109.47093 * 180.27645 * 6 4 3 8 8 C 1.36247 * 120.26203 * 265.00468 * 7 6 4 9 9 C 1.39335 * 121.02423 * 179.97438 * 8 7 6 10 10 C 1.36206 * 121.07992 * 359.95613 * 9 8 7 11 11 C 1.40331 * 119.51587 * 0.02562 * 10 9 8 12 12 C 1.40443 * 122.07688 * 179.97438 * 11 10 9 13 13 N 1.31244 * 119.87879 * 180.02562 * 12 11 10 14 14 C 1.32614 * 122.78176 * 0.02562 * 13 12 11 15 15 C 1.36167 * 121.88057 * 359.97438 * 14 13 12 16 16 C 1.40192 * 120.25576 * 84.72374 * 7 6 4 17 17 C 1.55154 * 111.00760 * 236.11574 * 2 1 3 18 18 C 1.54427 * 102.89416 * 206.40602 * 17 2 1 19 19 N 1.47015 * 107.28078 * 22.19129 * 18 17 2 20 20 C 1.36937 * 125.64833 * 181.02299 * 19 18 17 21 21 H 1.08001 * 119.99828 * 173.93980 * 20 19 18 22 22 C 1.38812 * 120.00075 * 353.94137 * 20 19 18 23 23 N 1.31622 * 119.99689 * 6.83153 * 22 20 19 24 24 Si 1.86799 * 120.00173 * 186.82765 * 22 20 19 25 25 H 1.48510 * 109.46793 * 94.98504 * 24 22 20 26 26 H 1.48498 * 109.47453 * 214.98500 * 24 22 20 27 27 H 1.48496 * 109.47371 * 334.98948 * 24 22 20 28 28 C 1.47423 * 108.70384 * 1.05696 * 19 18 17 29 29 H 1.09006 * 109.46983 * 60.70600 * 1 2 3 30 30 H 1.09003 * 109.46983 * 180.69264 * 1 2 3 31 31 H 1.08999 * 109.47374 * 300.70169 * 1 2 3 32 32 H 0.97001 * 120.00275 * 239.29460 * 3 2 1 33 33 H 1.09000 * 109.47510 * 300.27749 * 6 4 3 34 34 H 1.08997 * 109.46802 * 60.28089 * 6 4 3 35 35 H 1.08005 * 119.49256 * 359.97228 * 8 7 6 36 36 H 1.07994 * 119.45968 * 179.97438 * 9 8 7 37 37 H 1.08003 * 120.24211 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.05937 * 0.04392 * 12 11 10 39 39 H 1.08000 * 119.05591 * 179.97438 * 14 13 12 40 40 H 1.08005 * 120.66332 * 180.02562 * 15 14 13 41 41 H 1.08992 * 110.72385 * 324.75380 * 17 2 1 42 42 H 1.09007 * 110.71507 * 88.02391 * 17 2 1 43 43 H 1.08998 * 109.87936 * 262.76667 * 18 17 2 44 44 H 1.08999 * 109.87609 * 141.61072 * 18 17 2 45 45 H 0.96996 * 119.99670 * 180.02562 * 23 22 20 46 46 H 1.09001 * 110.36597 * 217.03406 * 28 19 18 47 47 H 1.08998 * 110.36506 * 94.71299 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7357 2.2108 1.0036 5 8 1.0187 1.8353 1.9069 6 6 2.2780 3.6169 1.0068 7 6 1.7836 4.3431 2.2312 8 6 0.6681 5.1224 2.1637 9 6 0.1967 5.8005 3.2860 10 6 0.8356 5.7048 4.4851 11 6 1.9878 4.9110 4.5932 12 6 2.6887 4.7746 5.8025 13 7 3.7620 4.0211 5.8547 14 6 4.2317 3.3664 4.8014 15 6 3.6250 3.4330 3.5841 16 6 2.4647 4.2175 3.4501 17 6 2.0862 -0.8075 -1.2024 18 6 3.4684 -1.2732 -0.6950 19 7 3.4275 -1.2419 0.7743 20 6 4.4642 -1.5649 1.6086 21 1 4.3663 -1.4166 2.6739 22 6 5.6409 -2.0828 1.0851 23 7 5.8128 -2.1383 -0.2186 24 14 6.9805 -2.7008 2.2310 25 1 6.8346 -4.1668 2.4178 26 1 8.3111 -2.4070 1.6409 27 1 6.8606 -2.0200 3.5453 28 6 2.0852 -0.8062 1.2006 29 1 -0.3633 0.5029 -0.8963 30 1 -0.3633 -1.0276 0.0124 31 1 -0.3634 0.5247 0.8836 32 1 2.6260 1.6690 -0.7223 33 1 3.3675 3.5861 1.0178 34 1 1.9382 4.1393 0.1126 35 1 0.1409 5.2161 1.2257 36 1 -0.6898 6.4117 3.2038 37 1 0.4586 6.2366 5.3462 38 1 2.3449 5.2885 6.6880 39 1 5.1207 2.7633 4.9122 40 1 4.0242 2.8912 2.7394 41 1 1.4473 -1.6630 -1.4211 42 1 2.1916 -0.1693 -2.0798 43 1 4.2433 -0.5984 -1.0587 44 1 3.6667 -2.2883 -1.0388 45 1 6.6348 -2.5006 -0.5844 46 1 2.1553 -0.1714 2.0839 47 1 1.4523 -1.6702 1.4026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754676045.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:19 Heat of formation + Delta-G solvation = 23.865572 kcal Electronic energy + Delta-G solvation = -29843.807321 eV Core-core repulsion = 25991.074438 eV Total energy + Delta-G solvation = -3852.732883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.97633 -41.05179 -39.05063 -38.17330 -35.66226 -34.80855 -33.65214 -32.35273 -31.88626 -31.24384 -30.34171 -28.45226 -27.53229 -25.45132 -25.13162 -24.54323 -23.07195 -22.14072 -21.30137 -20.41625 -19.00511 -18.96616 -18.06390 -17.85607 -17.70880 -17.08415 -16.66474 -16.20966 -15.83268 -15.57961 -15.53864 -15.27278 -15.07802 -14.79009 -14.62617 -14.39324 -14.06956 -13.90305 -13.61371 -13.53173 -13.44703 -13.19133 -12.95804 -12.91767 -12.85044 -12.75529 -12.52497 -12.14876 -12.05667 -11.97468 -11.90042 -11.70332 -11.54678 -11.11053 -10.71886 -10.57405 -10.50174 -9.97849 -9.94253 -8.96036 -8.87175 -7.89686 -5.21750 -0.58099 -0.03886 0.94558 1.41140 1.42531 1.51197 1.75234 2.06794 2.39038 2.45548 3.12850 3.28936 3.43326 3.50844 3.58280 3.70211 3.75128 3.87148 3.93619 4.03150 4.04744 4.12532 4.19239 4.28342 4.35696 4.44243 4.52174 4.63368 4.69465 4.74684 4.83676 4.85519 4.86387 4.87899 4.92286 5.01908 5.08575 5.10454 5.15386 5.36496 5.40858 5.47455 5.55847 5.64605 5.67792 5.71457 5.78371 5.96269 6.18028 6.70674 6.97316 7.09845 7.39770 7.75428 8.40169 9.20508 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010934 B = 0.004059 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.305341 B = 6897.316958 C = 8881.381837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.169 3.831 3 N -0.700 5.700 4 C 0.515 3.485 5 O -0.568 6.568 6 C -0.100 4.100 7 C -0.075 4.075 8 C -0.085 4.085 9 C -0.117 4.117 10 C -0.087 4.087 11 C -0.131 4.131 12 C 0.142 3.858 13 N -0.516 5.516 14 C 0.056 3.944 15 C -0.162 4.162 16 C -0.028 4.028 17 C -0.128 4.128 18 C 0.185 3.815 19 N -0.619 5.619 20 C -0.241 4.241 21 H 0.063 0.937 22 C -0.052 4.052 23 N -0.941 5.941 24 Si 0.967 3.033 25 H -0.287 1.287 26 H -0.288 1.288 27 H -0.276 1.276 28 C 0.131 3.869 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.409 0.591 33 H 0.104 0.896 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.198 0.802 39 H 0.151 0.849 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.017 0.983 44 H 0.009 0.991 45 H 0.248 0.752 46 H 0.024 0.976 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.070 19.325 0.041 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.082 3.918 3 N -0.352 5.352 4 C 0.303 3.697 5 O -0.447 6.447 6 C -0.139 4.139 7 C -0.075 4.075 8 C -0.104 4.104 9 C -0.135 4.135 10 C -0.107 4.107 11 C -0.133 4.133 12 C -0.029 4.029 13 N -0.225 5.225 14 C -0.086 4.086 15 C -0.182 4.182 16 C -0.033 4.033 17 C -0.166 4.166 18 C 0.060 3.940 19 N -0.345 5.345 20 C -0.370 4.370 21 H 0.081 0.919 22 C -0.246 4.246 23 N -0.590 5.590 24 Si 0.795 3.205 25 H -0.214 1.214 26 H -0.214 1.214 27 H -0.201 1.201 28 C 0.005 3.995 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.245 0.755 33 H 0.122 0.878 34 H 0.160 0.840 35 H 0.169 0.831 36 H 0.180 0.820 37 H 0.184 0.816 38 H 0.214 0.786 39 H 0.168 0.832 40 H 0.142 0.858 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.035 0.965 44 H 0.028 0.972 45 H 0.058 0.942 46 H 0.043 0.957 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -12.792 18.776 1.376 22.762 hybrid contribution 1.326 -1.015 -0.443 1.728 sum -11.467 17.761 0.932 21.161 Atomic orbital electron populations 1.21909 0.92081 1.02806 1.02978 1.21284 0.94006 0.81293 0.95229 1.45792 1.51749 1.11417 1.26214 1.20841 0.80169 0.87707 0.81031 1.90664 1.39082 1.78340 1.36597 1.20721 1.02931 0.91498 0.98776 1.19205 0.96980 0.98490 0.92854 1.21227 0.93814 0.94694 1.00691 1.21306 1.00809 0.99391 0.92006 1.21360 0.92730 0.96756 0.99838 1.19323 0.99001 1.00534 0.94417 1.23811 0.89135 0.92871 0.97098 1.67427 1.14558 1.08488 1.32023 1.22243 1.00089 0.97543 0.88697 1.21940 0.96724 0.99980 0.99547 1.18234 0.94690 0.95823 0.94580 1.23111 0.96716 0.99998 0.96814 1.20969 0.92953 0.97457 0.82596 1.44660 1.08147 1.79095 1.02630 1.19236 0.93183 1.35067 0.89556 0.91865 1.25453 1.00021 1.01750 0.97393 1.70137 1.26621 1.51611 1.10599 0.85240 0.78734 0.78208 0.78278 1.21447 1.21449 1.20132 1.21946 0.86293 0.94843 0.96453 0.90246 0.91292 0.92400 0.75501 0.87828 0.83971 0.83148 0.82047 0.81570 0.78559 0.83189 0.85786 0.89391 0.88140 0.96520 0.97233 0.94242 0.95732 0.96498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 8.57 71.98 0.62 -3.29 16 2 C 0.17 5.65 0.82 4.99 0.00 5.66 16 3 N -0.70 -20.62 5.18 -416.64 -2.16 -22.78 16 4 C 0.52 15.58 7.20 87.66 0.63 16.21 16 5 O -0.57 -21.61 12.84 -3.06 -0.04 -21.65 16 6 C -0.10 -2.22 5.28 29.10 0.15 -2.06 16 7 C -0.07 -1.82 4.38 -19.85 -0.09 -1.91 16 8 C -0.09 -1.58 9.58 22.07 0.21 -1.36 16 9 C -0.12 -1.80 9.94 22.06 0.22 -1.58 16 10 C -0.09 -1.48 9.81 22.31 0.22 -1.26 16 11 C -0.13 -3.22 5.74 -21.31 -0.12 -3.34 16 12 C 0.14 3.46 11.05 85.32 0.94 4.40 16 13 N -0.52 -15.88 10.30 -195.52 -2.01 -17.90 16 14 C 0.06 1.82 11.07 84.09 0.93 2.76 16 15 C -0.16 -5.25 9.36 22.39 0.21 -5.05 16 16 C -0.03 -0.81 5.75 -21.28 -0.12 -0.94 16 17 C -0.13 -4.21 5.99 31.82 0.19 -4.02 16 18 C 0.18 8.72 5.37 86.77 0.47 9.19 16 19 N -0.62 -32.39 3.39 -691.81 -2.35 -34.74 16 20 C -0.24 -14.07 10.26 84.03 0.86 -13.21 16 21 H 0.06 3.73 7.84 -2.91 -0.02 3.71 16 22 C -0.05 -3.01 5.48 84.86 0.47 -2.55 16 23 N -0.94 -55.76 10.36 21.65 0.22 -55.54 16 24 Si 0.97 46.94 29.56 68.60 2.03 48.97 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 28 C 0.13 5.89 6.13 86.86 0.53 6.42 16 29 H 0.08 1.77 8.14 -2.38 -0.02 1.76 16 30 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 31 H 0.06 1.85 6.23 -2.39 -0.01 1.84 16 32 H 0.41 10.11 8.50 -92.71 -0.79 9.33 16 33 H 0.10 2.32 6.79 -2.39 -0.02 2.30 16 34 H 0.14 1.94 8.05 -2.39 -0.02 1.92 16 35 H 0.15 1.91 8.05 -2.91 -0.02 1.89 16 36 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.15 4.64 8.06 -2.91 -0.02 4.62 16 40 H 0.12 4.15 6.65 -2.91 -0.02 4.14 16 41 H 0.09 2.67 8.04 -2.39 -0.02 2.65 16 42 H 0.10 2.62 8.07 -2.38 -0.02 2.60 16 43 H 0.02 0.85 7.55 -2.39 -0.02 0.84 16 44 H 0.01 0.51 7.37 -2.39 -0.02 0.49 16 45 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 46 H 0.02 1.22 6.58 -2.39 -0.02 1.21 16 47 H 0.02 0.79 8.03 -2.39 -0.02 0.77 16 Total: -1.00 -79.21 379.28 2.22 -76.98 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.20 Total: 22.56 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 6.32 Total: 4.08 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -6.29 Total: -130.95 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.04 Total: -21.65 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -79.21 2.22 -76.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754676045.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.849 kcal (2) G-P(sol) polarization free energy of solvation -79.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds