Wall clock time and date at job start Tue Mar 31 2020 22:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 110.28789 * 2 1 4 4 C 1.34772 * 120.00103 * 60.40070 * 3 2 1 5 5 O 1.21282 * 120.00027 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00134 * 180.02562 * 4 3 2 7 7 H 1.09000 * 110.48881 * 321.24279 * 6 4 3 8 8 C 1.54096 * 110.55313 * 84.09808 * 6 4 3 9 9 N 1.47054 * 103.86146 * 118.59456 * 8 6 4 10 10 C 1.33951 * 109.18219 * 0.02562 * 9 8 6 11 11 O 1.21582 * 123.04303 * 179.97438 * 10 9 8 12 12 N 1.33952 * 113.91073 * 359.97438 * 10 9 8 13 13 C 1.54258 * 110.32460 * 122.12527 * 2 1 3 14 14 C 1.54385 * 105.05894 * 118.99663 * 13 2 1 15 15 N 1.48558 * 104.59360 * 23.85294 * 14 13 2 16 16 C 1.46904 * 111.00006 * 200.95842 * 15 14 13 17 17 C 1.50698 * 109.47003 * 176.49712 * 16 15 14 18 18 O 1.21285 * 120.00129 * 6.05525 * 17 16 15 19 19 N 1.34777 * 119.99622 * 186.06550 * 17 16 15 20 20 C 1.37101 * 119.99927 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99917 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00270 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99953 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00199 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46994 * 60.00161 * 24 22 20 26 26 H 1.48504 * 109.47360 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47491 * 300.00233 * 24 22 20 28 28 C 1.48553 * 104.22530 * 320.51625 * 15 14 13 29 29 H 1.09000 * 109.46996 * 60.70381 * 1 2 3 30 30 H 1.09000 * 109.47006 * 180.70269 * 1 2 3 31 31 H 1.09003 * 109.46696 * 300.70055 * 1 2 3 32 32 H 0.97002 * 119.99948 * 240.67637 * 3 2 1 33 33 H 1.08998 * 110.55423 * 237.19153 * 8 6 4 34 34 H 1.09002 * 110.54821 * 0.02562 * 8 6 4 35 35 H 0.97002 * 125.41037 * 180.02562 * 9 8 6 36 36 H 0.96993 * 125.40509 * 179.97438 * 12 10 9 37 37 H 1.08993 * 110.32566 * 237.88974 * 13 2 1 38 38 H 1.08995 * 110.32439 * 0.10445 * 13 2 1 39 39 H 1.08997 * 110.41174 * 142.63470 * 14 13 2 40 40 H 1.09003 * 110.41362 * 264.95892 * 14 13 2 41 41 H 1.09004 * 109.46835 * 296.49470 * 16 15 14 42 42 H 1.08996 * 109.47097 * 56.48956 * 16 15 14 43 43 H 0.96993 * 120.00564 * 359.97438 * 19 17 16 44 44 H 0.97002 * 120.00304 * 179.97438 * 23 22 20 45 45 H 1.09002 * 110.41465 * 280.70631 * 28 15 14 46 46 H 1.09006 * 110.41481 * 158.25867 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3741 0.0000 4 6 1.7309 2.2061 1.0148 5 8 1.0336 1.8173 1.9279 6 6 2.2530 3.6198 1.0146 7 1 3.2753 3.6489 0.6377 8 6 1.3382 4.5341 0.1768 9 7 0.8514 5.5280 1.1451 10 6 1.3763 5.2636 2.3488 11 8 1.1402 5.9323 3.3364 12 7 2.1848 4.1957 2.3659 13 6 2.0658 -0.7692 1.2251 14 6 2.8828 -1.9401 0.6376 15 7 3.2720 -1.4806 -0.7205 16 6 3.6119 -2.6193 -1.5842 17 6 3.9173 -2.1223 -2.9736 18 8 3.9656 -0.9307 -3.1945 19 7 4.1366 -3.0020 -3.9709 20 6 4.4140 -2.5498 -5.2351 21 1 4.4563 -1.4888 -5.4320 22 6 4.6407 -3.4567 -6.2632 23 7 4.5897 -4.7478 -6.0236 24 14 5.0178 -2.8407 -7.9858 25 1 6.2520 -2.0151 -7.9571 26 1 5.2189 -3.9992 -8.8929 27 1 3.8833 -2.0179 -8.4769 28 6 2.0684 -0.7707 -1.2246 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8837 32 1 2.5920 1.6864 -0.7324 33 1 1.9058 5.0195 -0.6171 34 1 0.5061 3.9657 -0.2387 35 1 0.2462 6.2590 0.9442 36 1 2.6515 3.8567 3.1456 37 1 2.7068 -0.1245 1.8263 38 1 1.2388 -1.1484 1.8254 39 1 3.7689 -2.1273 1.2441 40 1 2.2689 -2.8386 0.5754 41 1 4.4852 -3.1326 -1.1817 42 1 2.7699 -3.3104 -1.6223 43 1 4.0983 -3.9549 -3.7943 44 1 4.7475 -5.3809 -6.7414 45 1 1.3263 -1.4857 -1.5801 46 1 2.3413 -0.0774 -2.0202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754678417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:14 Heat of formation + Delta-G solvation = -68.800544 kcal Electronic energy + Delta-G solvation = -29974.516923 eV Core-core repulsion = 25706.916473 eV Total energy + Delta-G solvation = -4267.600450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.63371 -40.25686 -38.80160 -37.63362 -36.41772 -34.71275 -33.93072 -33.31952 -31.92207 -31.27667 -29.82720 -29.05309 -27.50082 -25.56630 -24.46153 -23.91444 -22.07625 -21.49871 -21.18505 -19.59267 -19.24571 -18.29438 -17.93262 -17.78373 -16.74997 -16.48478 -15.93890 -15.73167 -15.35824 -15.19925 -15.08125 -14.79815 -14.51686 -14.23444 -14.05516 -13.83325 -13.68365 -13.35628 -13.25949 -13.12613 -12.79574 -12.45766 -12.30640 -12.08654 -12.00168 -11.63738 -11.49812 -11.26285 -11.00911 -10.91494 -10.88138 -10.58022 -10.50770 -10.29195 -10.24465 -9.69282 -9.55794 -9.22498 -9.14477 -8.56381 -8.15783 -8.02962 -6.49313 -3.90607 2.17339 2.48871 2.72293 3.04380 3.13479 3.20517 3.23809 3.67848 3.81114 3.89475 3.96375 4.18526 4.25502 4.46403 4.51049 4.64318 4.86441 4.92198 5.06886 5.10541 5.17096 5.19802 5.25741 5.35743 5.57163 5.62637 5.63570 5.71237 5.75385 5.87028 5.91325 6.03111 6.12073 6.16972 6.26236 6.47598 6.66202 6.82067 6.98018 7.03957 7.09773 7.35713 7.47132 7.97255 7.98503 8.32810 8.52540 9.09455 9.45584 9.96263 10.68134 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.002331 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.273662 B =12011.654408 C =13031.831716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.171 3.829 3 N -0.703 5.703 4 C 0.502 3.498 5 O -0.523 6.523 6 C 0.101 3.899 7 H 0.118 0.882 8 C 0.105 3.895 9 N -0.739 5.739 10 C 0.706 3.294 11 O -0.586 6.586 12 N -0.713 5.713 13 C -0.117 4.117 14 C 0.026 3.974 15 N -0.484 5.484 16 C 0.033 3.967 17 C 0.442 3.558 18 O -0.582 6.582 19 N -0.562 5.562 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.900 5.900 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.036 3.964 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.408 0.592 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.432 0.568 36 H 0.434 0.566 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.392 0.608 44 H 0.273 0.727 45 H 0.053 0.947 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.947 10.115 10.932 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.084 3.916 3 N -0.355 5.355 4 C 0.285 3.715 5 O -0.398 6.398 6 C -0.009 4.009 7 H 0.136 0.864 8 C -0.021 4.021 9 N -0.402 5.402 10 C 0.405 3.595 11 O -0.464 6.464 12 N -0.375 5.375 13 C -0.156 4.156 14 C -0.102 4.102 15 N -0.208 5.208 16 C -0.098 4.098 17 C 0.228 3.772 18 O -0.467 6.467 19 N -0.198 5.198 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.541 5.541 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.092 4.092 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.244 0.756 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.274 0.726 36 H 0.276 0.724 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.225 0.775 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.014 11.117 11.798 17.290 hybrid contribution -0.169 -1.009 -1.161 1.547 sum -6.183 10.108 10.637 15.923 Atomic orbital electron populations 1.22193 0.93663 1.02641 1.03162 1.21100 0.93558 0.80924 0.95974 1.46163 1.52847 1.11990 1.24514 1.20641 0.81116 0.86942 0.82764 1.90721 1.36949 1.76634 1.35498 1.21891 1.01954 0.91868 0.85201 0.86431 1.22254 0.97869 0.89723 0.92251 1.45049 1.52658 1.33693 1.08841 1.15852 0.78786 0.81137 0.83710 1.91001 1.66132 1.54082 1.35201 1.44801 1.51550 1.30366 1.10825 1.22622 0.99535 0.96653 0.96746 1.23231 0.98992 0.96462 0.91498 1.65206 1.32666 1.21994 1.00896 1.22095 1.01321 0.92506 0.93918 1.19665 0.84865 0.87164 0.85545 1.90456 1.57005 1.15820 1.83422 1.41870 1.61385 1.08468 1.08053 1.19630 1.44877 0.94535 0.83968 0.87928 1.25275 0.97339 0.94944 1.00337 1.69600 1.49428 1.00838 1.34266 0.85918 0.79178 0.77964 0.81159 1.19858 1.20963 1.19904 1.23475 0.91156 0.98394 0.96205 0.92344 0.91711 0.90467 0.75603 0.88425 0.89442 0.72599 0.72371 0.90712 0.90658 0.90059 0.93813 0.88992 0.93298 0.77461 0.91739 0.92848 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 8.18 37.16 0.30 -1.39 16 2 C 0.17 1.92 1.01 -130.44 -0.13 1.79 16 3 N -0.70 -6.72 5.09 -46.33 -0.24 -6.96 16 4 C 0.50 4.90 6.10 -10.99 -0.07 4.83 16 5 O -0.52 -6.91 13.88 5.56 0.08 -6.83 16 6 C 0.10 0.73 4.17 -68.21 -0.28 0.44 16 7 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 8 C 0.10 0.59 7.70 -3.17 -0.02 0.57 16 9 N -0.74 -5.86 6.37 -64.70 -0.41 -6.27 16 10 C 0.71 8.26 8.92 -88.39 -0.79 7.47 16 11 O -0.59 -9.40 18.05 5.29 0.10 -9.30 16 12 N -0.71 -6.73 5.63 -59.33 -0.33 -7.06 16 13 C -0.12 -1.33 5.49 -25.35 -0.14 -1.47 16 14 C 0.03 0.31 6.49 -2.18 -0.01 0.30 16 15 N -0.48 -7.13 5.18 -231.40 -1.20 -8.33 16 16 C 0.03 0.54 5.39 -4.97 -0.03 0.52 16 17 C 0.44 9.57 7.43 -10.99 -0.08 9.49 16 18 O -0.58 -14.06 14.01 5.55 0.08 -13.98 16 19 N -0.56 -13.39 5.29 -10.97 -0.06 -13.44 16 20 C -0.30 -7.93 9.68 -14.93 -0.14 -8.07 16 21 H 0.10 2.82 7.16 -52.49 -0.38 2.44 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -23.60 13.05 55.50 0.72 -22.88 16 24 Si 0.93 20.14 29.55 -169.99 -5.02 15.12 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 28 C 0.04 0.49 4.78 -2.18 -0.01 0.48 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.92 6.25 -51.93 -0.32 0.60 16 32 H 0.41 3.46 8.27 -40.82 -0.34 3.12 16 33 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.48 7.72 -51.93 -0.40 0.08 16 35 H 0.43 2.64 8.96 -40.82 -0.37 2.28 16 36 H 0.43 3.83 8.96 -40.82 -0.37 3.47 16 37 H 0.07 0.91 7.33 -51.93 -0.38 0.53 16 38 H 0.07 0.83 7.71 -51.93 -0.40 0.43 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.04 0.48 7.92 -51.93 -0.41 0.07 16 41 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.05 0.73 7.98 -51.93 -0.41 0.32 16 43 H 0.39 9.03 7.90 -40.82 -0.32 8.70 16 44 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 45 H 0.05 0.75 7.68 -51.93 -0.40 0.35 16 46 H 0.11 1.76 6.14 -51.93 -0.32 1.44 16 LS Contribution 375.40 15.07 5.66 5.66 Total: -1.00 -34.64 375.40 -8.62 -43.27 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -6.49 Total: 15.56 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: -1.50 Total: 15.46 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: -1.52 Total: -64.95 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: 0.25 Total: -30.12 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.64 -8.62 -43.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754678417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.535 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds