Wall clock time and date at job start Tue Mar 31 2020 22:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 110.27237 * 2 1 4 4 C 1.34767 * 120.00137 * 57.90769 * 3 2 1 5 5 O 1.21282 * 120.00051 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00188 * 180.02562 * 4 3 2 7 7 H 1.09000 * 110.48800 * 42.69710 * 6 4 3 8 8 C 1.54104 * 110.54835 * 279.99906 * 6 4 3 9 9 N 1.47049 * 103.86480 * 241.40646 * 8 6 4 10 10 C 1.33949 * 109.18066 * 359.97438 * 9 8 6 11 11 O 1.21578 * 123.04199 * 179.97438 * 10 9 8 12 12 N 1.33952 * 113.91275 * 0.02562 * 10 9 8 13 13 C 1.54781 * 110.39618 * 122.05373 * 2 1 3 14 14 C 1.54937 * 102.83798 * 140.73086 * 13 2 1 15 15 N 1.48531 * 103.37331 * 322.79651 * 14 13 2 16 16 C 1.46908 * 110.99857 * 159.63431 * 15 14 13 17 17 C 1.50705 * 109.46685 * 69.87722 * 16 15 14 18 18 O 1.21296 * 120.00050 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00071 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00210 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99877 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00103 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99871 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00165 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47121 * 89.99779 * 24 22 20 26 26 H 1.48492 * 109.47272 * 210.00224 * 24 22 20 27 27 H 1.48506 * 109.47025 * 330.00150 * 24 22 20 28 28 C 1.47901 * 105.82310 * 39.12709 * 15 14 13 29 29 H 1.09008 * 109.46912 * 182.09355 * 1 2 3 30 30 H 1.08995 * 109.47477 * 302.08809 * 1 2 3 31 31 H 1.08993 * 109.47119 * 62.09610 * 1 2 3 32 32 H 0.96996 * 119.99305 * 237.91269 * 3 2 1 33 33 H 1.08998 * 110.54638 * 0.02562 * 8 6 4 34 34 H 1.09002 * 110.54894 * 122.80482 * 8 6 4 35 35 H 0.97004 * 125.41199 * 180.02562 * 9 8 6 36 36 H 0.96994 * 125.40973 * 180.02562 * 12 10 9 37 37 H 1.08996 * 110.65506 * 22.44625 * 13 2 1 38 38 H 1.09005 * 110.87400 * 259.11173 * 13 2 1 39 39 H 1.09002 * 110.66811 * 204.28059 * 14 13 2 40 40 H 1.09001 * 110.66542 * 81.31698 * 14 13 2 41 41 H 1.08997 * 109.46891 * 189.87443 * 16 15 14 42 42 H 1.08998 * 109.47004 * 309.88012 * 16 15 14 43 43 H 0.96997 * 119.99624 * 359.97438 * 19 17 16 44 44 H 0.97000 * 120.00113 * 180.02562 * 23 22 20 45 45 H 1.09004 * 109.92027 * 94.01264 * 28 15 14 46 46 H 1.08997 * 109.92248 * 215.31402 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3743 0.0000 4 6 1.6894 2.2213 0.9888 5 8 0.9562 1.8457 1.8789 6 6 2.2111 3.6351 0.9885 7 1 2.1666 4.0580 -0.0152 8 6 3.6529 3.6798 1.5308 9 7 3.5535 4.5305 2.7261 10 6 2.2837 4.9284 2.8788 11 8 1.9183 5.6439 3.7913 12 7 1.4526 4.4657 1.9356 13 6 2.0694 -0.7699 1.2296 14 6 3.2856 -1.5353 0.6502 15 7 2.8314 -1.9229 -0.7098 16 6 3.9753 -2.2247 -1.5808 17 6 4.6249 -3.5077 -1.1302 18 8 4.1792 -4.1110 -0.1770 19 7 5.7018 -3.9842 -1.7857 20 6 6.2925 -5.1516 -1.3762 21 1 5.8951 -5.6892 -0.5280 22 6 7.4024 -5.6431 -2.0523 23 7 7.8862 -4.9887 -3.0840 24 14 8.2077 -7.2333 -1.4939 25 1 7.5804 -8.3800 -2.1987 26 1 9.6580 -7.1914 -1.8100 27 1 8.0249 -7.3929 -0.0288 28 6 2.0645 -0.7673 -1.2235 29 1 -0.3633 -1.0271 0.0375 30 1 -0.3634 0.5459 0.8706 31 1 -0.3633 0.4809 -0.9081 32 1 2.6242 1.6745 -0.7117 33 1 3.9916 2.6793 1.7998 34 1 4.3238 4.1271 0.7974 35 1 4.2907 4.7667 3.3108 36 1 0.5016 4.6499 1.8851 37 1 1.3199 -1.4656 1.6068 38 1 2.3851 -0.0799 2.0121 39 1 3.5048 -2.4193 1.2491 40 1 4.1582 -0.8845 0.5935 41 1 3.6302 -2.3337 -2.6089 42 1 4.6991 -1.4117 -1.5246 43 1 6.0584 -3.5015 -2.5477 44 1 8.6608 -5.3319 -3.5563 45 1 2.7162 -0.1209 -1.8114 46 1 1.2327 -1.1160 -1.8356 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754678419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:19 Heat of formation + Delta-G solvation = -101.402085 kcal Electronic energy + Delta-G solvation = -29839.309686 eV Core-core repulsion = 25570.295527 eV Total energy + Delta-G solvation = -4269.014159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.41567 -41.25224 -40.14995 -38.99823 -37.35445 -36.06041 -35.46939 -34.00676 -33.29973 -32.80946 -30.89698 -29.80553 -28.85949 -26.87941 -25.59326 -24.82638 -22.92775 -22.78578 -21.82718 -21.02727 -20.52806 -19.84489 -19.12504 -18.54697 -17.86969 -17.44353 -17.17845 -16.68165 -16.57272 -16.27472 -16.14124 -15.89198 -15.82232 -15.55751 -15.07367 -14.95897 -14.78021 -14.63845 -14.20641 -14.10029 -13.89604 -13.63475 -13.42222 -13.25403 -13.09084 -12.93935 -12.90197 -12.41337 -12.36525 -12.33559 -12.11479 -11.96791 -11.86228 -11.57630 -11.45732 -11.14797 -10.52870 -10.27220 -10.10500 -9.97078 -9.81561 -9.27103 -8.44549 -5.92082 1.38667 1.42769 1.43528 1.54483 1.67531 1.95983 2.10530 2.17880 2.30693 2.87182 3.06775 3.22898 3.29548 3.34680 3.51923 3.62552 3.73671 3.95209 4.01535 4.25716 4.32764 4.34454 4.36001 4.48665 4.55846 4.62526 4.65603 4.71057 4.81158 4.83297 4.90546 4.98161 5.11245 5.16073 5.34300 5.43500 5.52415 5.87237 5.90731 5.98976 6.13600 6.19637 6.28542 6.57128 6.64790 7.17013 7.22373 7.51064 7.61270 8.18231 8.72772 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019196 B = 0.002183 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.253546 B =12824.336183 C =13563.012111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.174 3.826 3 N -0.698 5.698 4 C 0.503 3.497 5 O -0.559 6.559 6 C 0.108 3.892 7 H 0.166 0.834 8 C 0.101 3.899 9 N -0.732 5.732 10 C 0.694 3.306 11 O -0.641 6.641 12 N -0.712 5.712 13 C -0.113 4.113 14 C 0.046 3.954 15 N -0.515 5.515 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.619 6.619 19 N -0.575 5.575 20 C -0.330 4.330 21 H 0.075 0.925 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.988 3.012 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.276 1.276 28 C 0.040 3.960 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.420 0.580 33 H 0.087 0.913 34 H 0.141 0.859 35 H 0.439 0.561 36 H 0.435 0.565 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.085 0.915 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.818 20.843 -2.499 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.088 3.912 3 N -0.353 5.353 4 C 0.287 3.713 5 O -0.436 6.436 6 C -0.002 4.002 7 H 0.183 0.817 8 C -0.024 4.024 9 N -0.395 5.395 10 C 0.392 3.608 11 O -0.523 6.523 12 N -0.373 5.373 13 C -0.152 4.152 14 C -0.082 4.082 15 N -0.239 5.239 16 C -0.080 4.080 17 C 0.227 3.773 18 O -0.505 6.505 19 N -0.213 5.213 20 C -0.459 4.459 21 H 0.093 0.907 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.812 3.188 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.201 1.201 28 C -0.088 4.088 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.259 0.741 33 H 0.105 0.895 34 H 0.159 0.841 35 H 0.282 0.718 36 H 0.277 0.723 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.133 0.867 42 H 0.097 0.903 43 H 0.231 0.769 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.949 19.993 -0.939 21.925 hybrid contribution 1.287 -0.147 0.015 1.296 sum -7.662 19.847 -0.923 21.294 Atomic orbital electron populations 1.22096 0.92937 1.02675 1.03112 1.21004 0.94714 0.81057 0.94465 1.46037 1.50995 1.10735 1.27490 1.21200 0.80679 0.87976 0.81421 1.90753 1.37502 1.78004 1.37386 1.22180 0.91563 0.88109 0.98319 0.81732 1.22604 0.94433 0.97124 0.88208 1.45085 1.08652 1.54051 1.31673 1.16204 0.82903 0.79945 0.81741 1.90959 1.79672 1.44888 1.36753 1.44833 1.11757 1.52166 1.28568 1.22755 0.96974 0.98091 0.97362 1.23119 0.96453 0.98084 0.90566 1.64420 1.20852 1.36709 1.01965 1.21956 0.93008 0.94360 0.98724 1.20895 0.82146 0.89086 0.85159 1.90501 1.65771 1.62699 1.31511 1.41912 1.26729 1.22647 1.30023 1.19594 1.10889 1.01118 1.14349 0.90682 1.25943 0.97063 1.02280 0.95852 1.69651 1.25203 1.40766 1.20404 0.85002 0.77620 0.77840 0.78339 1.19801 1.19515 1.20055 1.23270 0.99158 0.90774 0.95560 0.91931 0.92122 0.90538 0.74136 0.89515 0.84117 0.71830 0.72280 0.91685 0.91196 0.92780 0.93278 0.86691 0.90311 0.76904 0.91361 0.89739 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.15 71.98 0.59 -2.05 16 2 C 0.17 2.93 0.95 4.55 0.00 2.94 16 3 N -0.70 -6.75 5.15 -418.66 -2.16 -8.90 16 4 C 0.50 6.68 6.14 87.66 0.54 7.21 16 5 O -0.56 -13.25 13.45 -3.04 -0.04 -13.29 16 6 C 0.11 0.74 4.17 44.51 0.19 0.93 16 7 H 0.17 -0.36 8.14 -2.39 -0.02 -0.38 16 8 C 0.10 0.52 7.70 86.65 0.67 1.19 16 9 N -0.73 -9.27 6.37 -477.35 -3.04 -12.31 16 10 C 0.69 14.59 8.92 179.57 1.60 16.19 16 11 O -0.64 -20.26 18.05 -3.96 -0.07 -20.33 16 12 N -0.71 -10.44 5.60 -460.35 -2.58 -13.02 16 13 C -0.11 -2.75 5.86 31.86 0.19 -2.57 16 14 C 0.05 1.33 5.86 86.65 0.51 1.83 16 15 N -0.51 -14.42 4.96 -887.54 -4.40 -18.82 16 16 C 0.05 1.51 5.18 85.56 0.44 1.95 16 17 C 0.44 19.78 7.59 87.66 0.66 20.44 16 18 O -0.62 -33.39 14.42 -3.08 -0.04 -33.43 16 19 N -0.58 -28.12 5.29 -306.98 -1.62 -29.75 16 20 C -0.33 -18.26 9.68 84.04 0.81 -17.44 16 21 H 0.08 4.49 7.16 -2.91 -0.02 4.47 16 22 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 23 N -0.92 -47.96 13.05 21.66 0.28 -47.67 16 24 Si 0.99 42.18 29.55 68.60 2.03 44.21 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 C 0.04 0.67 6.14 86.45 0.53 1.20 16 29 H 0.06 1.21 8.12 -2.38 -0.02 1.19 16 30 H 0.06 1.33 6.04 -2.39 -0.01 1.32 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.42 0.83 8.09 -92.71 -0.75 0.08 16 33 H 0.09 0.55 7.72 -2.39 -0.02 0.53 16 34 H 0.14 -0.38 8.14 -2.39 -0.02 -0.40 16 35 H 0.44 4.46 8.96 -92.71 -0.83 3.63 16 36 H 0.43 6.12 8.96 -92.71 -0.83 5.29 16 37 H 0.06 1.82 7.85 -2.39 -0.02 1.80 16 38 H 0.07 1.77 6.83 -2.38 -0.02 1.75 16 39 H 0.05 2.09 6.91 -2.39 -0.02 2.07 16 40 H 0.05 1.28 7.85 -2.39 -0.02 1.26 16 41 H 0.12 2.88 8.11 -2.39 -0.02 2.86 16 42 H 0.08 1.90 7.90 -2.39 -0.02 1.88 16 43 H 0.40 18.12 7.90 -92.71 -0.73 17.39 16 44 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 45 H 0.08 0.86 7.09 -2.38 -0.02 0.84 16 46 H 0.10 1.60 7.68 -2.39 -0.02 1.58 16 Total: -1.00 -86.25 374.94 -6.52 -92.77 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: -2.07 Total: 28.87 kcal Atomic # 6 Polarization: 24.49 SS G_CDS: 7.20 Total: 31.69 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -13.52 Total: -130.47 kcal Atomic # 8 Polarization: -66.90 SS G_CDS: -0.16 Total: -67.05 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -86.25 -6.52 -92.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754678419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.635 kcal (2) G-P(sol) polarization free energy of solvation -86.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds