Wall clock time and date at job start Tue Mar 31 2020 22:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.65529 * 2 1 4 4 N 1.46501 * 109.47029 * 56.80935 * 3 2 1 5 5 C 1.36935 * 119.99632 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00428 * 0.02562 * 5 4 3 7 7 C 1.38813 * 119.99888 * 179.97438 * 5 4 3 8 8 N 1.31618 * 119.99755 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00160 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47119 * 90.00153 * 9 7 5 11 11 H 1.48500 * 109.47159 * 210.00165 * 9 7 5 12 12 H 1.48502 * 109.47304 * 330.00117 * 9 7 5 13 13 C 1.54617 * 110.73911 * 236.80926 * 2 1 3 14 14 C 1.54004 * 105.04531 * 263.50760 * 13 2 1 15 15 N 1.47487 * 107.08065 * 1.30551 * 14 13 2 16 16 C 1.34779 * 127.03068 * 154.51033 * 15 14 13 17 17 O 1.21587 * 119.99961 * 185.23929 * 16 15 14 18 18 C 1.47551 * 119.99886 * 5.24680 * 16 15 14 19 19 C 1.38693 * 120.38885 * 38.89152 * 18 16 15 20 20 C 1.38970 * 120.54053 * 180.02562 * 19 18 16 21 21 C 1.36210 * 121.23799 * 359.92707 * 20 19 18 22 22 C 1.40713 * 120.19597 * 0.09467 * 21 20 19 23 23 N 1.33687 * 120.93457 * 179.66210 * 22 21 20 24 24 C 1.31067 * 121.34073 * 179.71571 * 23 22 21 25 25 C 1.39348 * 121.70306 * 0.56799 * 24 23 22 26 26 C 1.36674 * 119.86688 * 359.71289 * 25 24 23 27 27 C 1.40471 * 118.17240 * 0.02562 * 26 25 24 28 28 C 1.48112 * 105.93560 * 334.78013 * 15 14 13 29 29 H 1.09006 * 109.46741 * 183.19296 * 1 2 3 30 30 H 1.09004 * 109.47126 * 303.19084 * 1 2 3 31 31 H 1.08994 * 109.47665 * 63.18996 * 1 2 3 32 32 H 1.08999 * 109.46885 * 176.81181 * 3 2 1 33 33 H 1.09003 * 109.47169 * 296.81086 * 3 2 1 34 34 H 0.96998 * 120.00223 * 0.02562 * 4 3 2 35 35 H 0.97008 * 119.99986 * 179.97438 * 8 7 5 36 36 H 1.09002 * 110.32681 * 144.61515 * 13 2 1 37 37 H 1.09000 * 110.41519 * 22.44983 * 13 2 1 38 38 H 1.09000 * 109.91364 * 241.94599 * 14 13 2 39 39 H 1.08999 * 109.90752 * 120.66410 * 14 13 2 40 40 H 1.08001 * 119.73370 * 359.97002 * 19 18 16 41 41 H 1.08001 * 119.38287 * 179.97438 * 20 19 18 42 42 H 1.08000 * 119.90206 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.15332 * 180.30500 * 24 23 22 44 44 H 1.08000 * 120.06330 * 179.69828 * 25 24 23 45 45 H 1.07999 * 120.91246 * 180.02562 * 26 25 24 46 46 H 1.08998 * 110.66474 * 157.51015 * 28 15 14 47 47 H 1.09001 * 110.65852 * 280.62167 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4317 0.0000 4 7 1.5344 2.1553 1.1559 5 6 1.8816 3.4633 1.3655 6 1 2.5497 3.9615 0.6786 7 6 1.3740 4.1491 2.4604 8 7 0.5595 3.5421 3.2974 9 14 1.8470 5.9335 2.7461 10 1 0.8763 6.8197 2.0548 11 1 1.8312 6.2228 4.2026 12 1 3.2096 6.1768 2.2079 13 6 2.0775 -0.7916 -1.2101 14 6 2.3763 -2.2003 -0.6642 15 7 1.9872 -2.2051 0.7584 16 6 1.6222 -3.2721 1.4965 17 8 1.2335 -3.1174 2.6381 18 6 1.6943 -4.6280 0.9191 19 6 2.7514 -4.9843 0.0948 20 6 2.8222 -6.2603 -0.4511 21 6 1.8634 -7.1929 -0.1938 22 6 0.7725 -6.8759 0.6365 23 7 -0.1803 -7.7778 0.8936 24 6 -1.1970 -7.4928 1.6701 25 6 -1.3418 -6.2366 2.2555 26 6 -0.4050 -5.2678 2.0284 27 6 0.6852 -5.5807 1.1996 28 6 2.0734 -0.7966 1.2084 29 1 -0.3633 -1.0261 0.0572 30 1 -0.3633 0.5626 0.8600 31 1 -0.3634 0.4635 -0.9171 32 1 3.1580 1.4097 0.0572 33 1 1.7641 1.9352 -0.9172 34 1 0.9347 1.7078 1.7731 35 1 0.2051 4.0213 4.0627 36 1 2.9909 -0.3286 -1.5835 37 1 1.3292 -0.8428 -2.0010 38 1 3.4404 -2.4171 -0.7588 39 1 1.7936 -2.9415 -1.2110 40 1 3.5253 -4.2639 -0.1253 41 1 3.6535 -6.5175 -1.0909 42 1 1.9402 -8.1783 -0.6292 43 1 -1.9440 -8.2499 1.8578 44 1 -2.1928 -6.0290 2.8873 45 1 -0.5003 -4.2885 2.4738 46 1 1.4490 -0.6346 2.0870 47 1 3.1077 -0.5212 1.4142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754701645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:32 Heat of formation + Delta-G solvation = 40.888069 kcal Electronic energy + Delta-G solvation = -29090.014988 eV Core-core repulsion = 25238.020256 eV Total energy + Delta-G solvation = -3851.994732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.32551 -40.01884 -38.10251 -37.14373 -34.87755 -33.62762 -32.76661 -30.86992 -30.74614 -30.21688 -29.24567 -26.72862 -25.76195 -24.75284 -23.84483 -23.72180 -22.71451 -22.00740 -19.68631 -18.91051 -18.53937 -17.50489 -17.18249 -16.99763 -16.45150 -15.82304 -15.61363 -14.97430 -14.75551 -14.53169 -14.40294 -14.28199 -13.95368 -13.71995 -13.53000 -13.47755 -13.09754 -12.89954 -12.62084 -12.44648 -12.17612 -12.10759 -12.00359 -11.65210 -11.58353 -11.54372 -11.02117 -10.83697 -10.79817 -10.53488 -10.50940 -10.32857 -10.23928 -9.97432 -9.65181 -9.56998 -9.10891 -8.88996 -8.69077 -8.52722 -6.92898 -5.76385 -3.05477 -0.08010 0.51817 1.51922 2.41971 2.76645 2.97643 3.43483 3.48485 3.50499 3.83511 3.96890 4.15338 4.42197 4.49420 4.53374 4.59483 4.63026 4.75286 4.80313 4.82000 4.91365 5.02376 5.14501 5.25616 5.34789 5.46562 5.49420 5.52782 5.58482 5.67131 5.70899 5.82304 5.83132 5.94348 5.97112 5.97852 6.06440 6.08028 6.10682 6.21882 6.25976 6.36297 6.46859 6.49150 6.63502 6.73640 6.81916 7.49000 7.60076 7.69493 8.05061 8.42026 9.53415 10.10407 10.44726 11.46233 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019911 B = 0.002536 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.952787 B =11038.634885 C =11854.721860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C 0.169 3.831 4 N -0.731 5.731 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.125 4.125 14 C 0.099 3.901 15 N -0.611 5.611 16 C 0.574 3.426 17 O -0.529 6.529 18 C -0.098 4.098 19 C -0.082 4.082 20 C -0.108 4.108 21 C -0.074 4.074 22 C 0.121 3.879 23 N -0.478 5.478 24 C 0.134 3.866 25 C -0.176 4.176 26 C -0.048 4.048 27 C -0.068 4.068 28 C 0.119 3.881 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.024 0.976 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.161 0.839 44 H 0.140 0.860 45 H 0.155 0.845 46 H 0.091 0.909 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 -23.010 -10.369 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C 0.041 3.959 4 N -0.376 5.376 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.163 4.163 14 C -0.024 4.024 15 N -0.343 5.343 16 C 0.363 3.637 17 O -0.407 6.407 18 C -0.102 4.102 19 C -0.100 4.100 20 C -0.127 4.127 21 C -0.092 4.092 22 C 0.000 4.000 23 N -0.186 5.186 24 C -0.039 4.039 25 C -0.196 4.196 26 C -0.074 4.074 27 C -0.071 4.071 28 C -0.002 4.002 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.178 0.822 44 H 0.158 0.842 45 H 0.173 0.827 46 H 0.110 0.890 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.598 -23.652 -10.144 25.785 hybrid contribution -0.007 1.715 0.777 1.883 sum 1.590 -21.936 -9.367 23.906 Atomic orbital electron populations 1.21709 0.93453 1.00583 1.02942 1.21799 0.96652 0.96046 0.93498 1.20624 0.95637 0.87771 0.91841 1.42410 1.56974 1.10835 1.27382 1.19199 1.23068 0.87878 1.07064 0.91215 1.24741 1.00035 0.98299 0.97817 1.69658 1.36095 1.36231 1.15997 0.86202 0.77896 0.85098 0.77041 1.21765 1.21800 1.20802 1.22601 1.02138 0.93566 0.98011 1.22260 0.99769 0.98886 0.81474 1.48749 1.65916 1.08019 1.11647 1.17716 0.77621 0.83170 0.85230 1.90803 1.46393 1.85640 1.17824 1.19900 0.96658 0.93803 0.99792 1.21541 0.97208 0.97099 0.94187 1.20834 0.99191 0.92782 0.99937 1.20963 0.91992 1.00233 0.96044 1.18813 0.94811 0.89123 0.97235 1.68054 1.02176 1.33540 1.14820 1.23008 0.94489 0.95432 0.90954 1.22013 1.00857 0.94581 1.02119 1.21937 0.91201 1.01159 0.93095 1.18585 0.95701 0.93981 0.98827 1.22574 1.01940 0.77304 0.98387 0.93816 0.91058 0.92663 0.96083 0.95837 0.78019 0.93472 0.90059 0.90453 0.91341 0.90859 0.84563 0.84517 0.84351 0.82206 0.84175 0.82741 0.89023 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.30 37.16 0.31 -1.75 16 2 C -0.08 -1.19 0.64 -152.82 -0.10 -1.29 16 3 C 0.17 3.18 5.11 -4.04 -0.02 3.16 16 4 N -0.73 -17.83 5.15 -59.90 -0.31 -18.14 16 5 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 9 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C -0.12 -1.37 6.09 -25.36 -0.15 -1.52 16 14 C 0.10 1.00 5.32 -2.98 -0.02 0.98 16 15 N -0.61 -8.33 3.19 -171.20 -0.55 -8.87 16 16 C 0.57 8.62 7.16 -12.46 -0.09 8.53 16 17 O -0.53 -9.80 14.88 5.29 0.08 -9.72 16 18 C -0.10 -1.22 5.41 -104.66 -0.57 -1.79 16 19 C -0.08 -0.77 8.25 -39.14 -0.32 -1.09 16 20 C -0.11 -0.83 9.92 -40.04 -0.40 -1.23 16 21 C -0.07 -0.68 9.96 -39.38 -0.39 -1.07 16 22 C 0.12 1.44 6.60 -84.88 -0.56 0.88 16 23 N -0.48 -5.55 10.34 -10.99 -0.11 -5.66 16 24 C 0.13 1.27 11.15 -17.47 -0.19 1.08 16 25 C -0.18 -1.75 10.04 -39.73 -0.40 -2.14 16 26 C -0.05 -0.61 9.21 -39.31 -0.36 -0.97 16 27 C -0.07 -0.88 5.76 -106.54 -0.61 -1.49 16 28 C 0.12 1.91 5.68 -2.32 -0.01 1.90 16 29 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 30 H 0.07 1.35 6.69 -51.93 -0.35 1.00 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.02 0.40 8.11 -51.93 -0.42 -0.02 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.39 9.97 6.21 -40.82 -0.25 9.72 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16 37 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 38 H 0.07 0.55 7.14 -51.93 -0.37 0.18 16 39 H 0.07 0.66 7.33 -51.93 -0.38 0.28 16 40 H 0.14 1.04 6.11 -52.49 -0.32 0.71 16 41 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 43 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.16 2.17 5.92 -52.49 -0.31 1.86 16 46 H 0.09 1.75 7.71 -51.93 -0.40 1.35 16 47 H 0.08 1.26 8.02 -51.93 -0.42 0.84 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -33.75 379.28 -10.15 -43.90 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.54 Total: 7.91 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -4.14 Total: -5.04 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.24 Total: -60.05 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.75 -10.15 -43.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754701645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.784 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds