Wall clock time and date at job start Tue Mar 31 2020 22:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 110.65811 * 2 1 4 4 N 1.46497 * 109.46907 * 56.81016 * 3 2 1 5 5 C 1.36938 * 119.99953 * 179.97438 * 4 3 2 6 6 H 1.08009 * 119.99656 * 0.02562 * 5 4 3 7 7 C 1.38808 * 120.00260 * 180.02562 * 5 4 3 8 8 N 1.31621 * 119.99912 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00161 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46965 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.46908 * 120.00060 * 9 7 5 12 12 H 1.48494 * 109.46852 * 239.99997 * 9 7 5 13 13 C 1.54619 * 110.73554 * 236.81164 * 2 1 3 14 14 C 1.54008 * 105.04101 * 263.50985 * 13 2 1 15 15 N 1.47477 * 107.08711 * 1.31042 * 14 13 2 16 16 C 1.34779 * 127.03600 * 154.51422 * 15 14 13 17 17 O 1.21595 * 119.99873 * 185.24513 * 16 15 14 18 18 C 1.47558 * 119.99918 * 5.24549 * 16 15 14 19 19 C 1.38704 * 120.43624 * 38.60418 * 18 16 15 20 20 C 1.39004 * 120.75251 * 180.23482 * 19 18 16 21 21 C 1.36344 * 121.19123 * 359.48028 * 20 19 18 22 22 C 1.40355 * 119.92482 * 0.25665 * 21 20 19 23 23 C 1.40687 * 122.09765 * 180.02562 * 22 21 20 24 24 C 1.36262 * 118.66415 * 179.97438 * 23 22 21 25 25 N 1.32508 * 121.84474 * 359.97438 * 24 23 22 26 26 C 1.31317 * 122.71615 * 0.02562 * 25 24 23 27 27 C 1.40139 * 119.91871 * 359.97438 * 26 25 24 28 28 C 1.48121 * 105.93026 * 334.77828 * 15 14 13 29 29 H 1.08996 * 109.47092 * 183.18711 * 1 2 3 30 30 H 1.09000 * 109.46591 * 303.19275 * 1 2 3 31 31 H 1.09000 * 109.47055 * 63.18906 * 1 2 3 32 32 H 1.08997 * 109.46575 * 176.80818 * 3 2 1 33 33 H 1.09000 * 109.47201 * 296.80660 * 3 2 1 34 34 H 0.96999 * 120.00521 * 359.97438 * 4 3 2 35 35 H 0.97004 * 119.99837 * 179.97438 * 8 7 5 36 36 H 1.09003 * 110.32830 * 144.62274 * 13 2 1 37 37 H 1.08994 * 110.41824 * 22.44733 * 13 2 1 38 38 H 1.09001 * 109.91254 * 241.94615 * 14 13 2 39 39 H 1.09004 * 109.91120 * 120.67136 * 14 13 2 40 40 H 1.07998 * 119.62279 * 359.97438 * 19 18 16 41 41 H 1.07997 * 119.40644 * 179.76041 * 20 19 18 42 42 H 1.08000 * 120.03406 * 180.27518 * 21 20 19 43 43 H 1.07993 * 120.66671 * 0.02562 * 23 22 21 44 44 H 1.08003 * 119.07681 * 180.02562 * 24 23 22 45 45 H 1.08005 * 120.04188 * 180.02562 * 26 25 24 46 46 H 1.09004 * 110.66247 * 157.50908 * 28 15 14 47 47 H 1.09008 * 110.65982 * 280.62206 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0699 1.4316 0.0000 4 7 1.5346 2.1553 1.1559 5 6 1.8818 3.4632 1.3656 6 1 2.5499 3.9614 0.6786 7 6 1.3752 4.1487 2.4611 8 7 0.5614 3.5415 3.2986 9 14 1.8482 5.9332 2.7468 10 1 2.7689 6.3795 1.6705 11 1 0.6264 6.7770 2.7353 12 1 2.5259 6.0611 4.0619 13 6 2.0775 -0.7916 -1.2102 14 6 2.3762 -2.2003 -0.6642 15 7 1.9871 -2.2053 0.7583 16 6 1.6220 -3.2723 1.4963 17 8 1.2332 -3.1175 2.6380 18 6 1.6942 -4.6283 0.9189 19 6 2.7478 -4.9837 0.0897 20 6 2.8198 -6.2577 -0.4617 21 6 1.8669 -7.1964 -0.1974 22 6 0.7864 -6.8806 0.6409 23 6 -0.2217 -7.8137 0.9447 24 6 -1.2389 -7.4323 1.7673 25 7 -1.3006 -6.2138 2.2842 26 6 -0.3950 -5.2939 2.0432 27 6 0.6927 -5.5854 1.2090 28 6 2.0733 -0.7967 1.2083 29 1 -0.3633 -1.0260 0.0571 30 1 -0.3632 0.5626 0.8600 31 1 -0.3633 0.4635 -0.9172 32 1 3.1581 1.4095 0.0572 33 1 1.7644 1.9351 -0.9172 34 1 0.9343 1.7080 1.7727 35 1 0.2076 4.0204 4.0644 36 1 2.9910 -0.3286 -1.5835 37 1 1.3292 -0.8428 -2.0010 38 1 3.4403 -2.4172 -0.7588 39 1 1.7935 -2.9416 -1.2111 40 1 3.5188 -4.2611 -0.1334 41 1 3.6478 -6.5099 -1.1076 42 1 1.9437 -8.1819 -0.6323 43 1 -0.1895 -8.8123 0.5349 44 1 -2.0161 -8.1435 2.0053 45 1 -0.4879 -4.3141 2.4880 46 1 1.4489 -0.6347 2.0869 47 1 3.1078 -0.5214 1.4142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754709062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:48 Heat of formation + Delta-G solvation = 40.421268 kcal Electronic energy + Delta-G solvation = -29078.688984 eV Core-core repulsion = 25226.674011 eV Total energy + Delta-G solvation = -3852.014974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.35259 -40.01336 -38.10624 -37.41226 -34.88137 -33.33061 -32.62577 -31.52361 -30.58409 -29.98879 -29.23159 -26.73476 -25.77318 -24.71746 -23.91715 -23.69055 -22.80673 -22.00630 -19.76254 -18.88802 -18.36493 -17.63314 -17.10553 -16.96876 -16.46169 -15.81682 -15.77175 -15.00446 -14.68282 -14.50698 -14.42652 -14.29301 -14.13831 -13.67922 -13.62674 -13.48289 -13.04995 -12.87922 -12.66105 -12.39663 -12.29099 -12.20328 -12.08280 -11.80328 -11.58916 -11.56613 -11.00321 -10.83994 -10.56124 -10.50126 -10.46555 -10.29011 -9.98210 -9.90772 -9.65445 -9.62505 -9.47123 -8.87970 -8.67623 -8.38904 -6.91155 -5.74703 -3.03901 -0.14571 0.56587 1.37814 2.47641 2.76765 2.98141 3.44647 3.49809 3.52517 3.79651 4.08185 4.22526 4.32115 4.41599 4.47632 4.58045 4.61549 4.63364 4.74622 4.80462 4.90937 4.96110 5.23328 5.26544 5.33823 5.37220 5.40847 5.48851 5.59455 5.60043 5.70132 5.73589 5.83144 5.84579 5.96332 5.97464 6.02310 6.08351 6.12467 6.24679 6.30715 6.37941 6.44395 6.49542 6.64986 6.75032 6.83981 7.48189 7.71446 7.77442 8.04032 8.43627 9.55067 10.12102 10.46328 11.47903 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.002539 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.417065 B =11023.794365 C =11854.854941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C 0.169 3.831 4 N -0.731 5.731 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.930 5.930 9 Si 0.906 3.094 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.125 4.125 14 C 0.099 3.901 15 N -0.610 5.610 16 C 0.572 3.428 17 O -0.525 6.525 18 C -0.086 4.086 19 C -0.086 4.086 20 C -0.103 4.103 21 C -0.094 4.094 22 C -0.027 4.027 23 C -0.162 4.162 24 C 0.079 3.921 25 N -0.486 5.486 26 C 0.158 3.842 27 C -0.080 4.080 28 C 0.119 3.881 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.024 0.976 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.154 0.846 45 H 0.178 0.822 46 H 0.093 0.907 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.696 -24.892 -12.516 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C 0.041 3.959 4 N -0.376 5.376 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.163 4.163 14 C -0.024 4.024 15 N -0.343 5.343 16 C 0.361 3.639 17 O -0.403 6.403 18 C -0.091 4.091 19 C -0.104 4.104 20 C -0.122 4.122 21 C -0.112 4.112 22 C -0.032 4.032 23 C -0.182 4.182 24 C -0.064 4.064 25 N -0.194 5.194 26 C -0.013 4.013 27 C -0.083 4.083 28 C -0.002 4.002 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.171 0.829 45 H 0.195 0.805 46 H 0.111 0.889 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.769 -24.662 -11.328 27.281 hybrid contribution 0.883 0.574 -0.247 1.082 sum 3.652 -24.088 -11.576 26.973 Atomic orbital electron populations 1.21715 0.93392 1.00665 1.02964 1.21802 0.96697 0.96038 0.93459 1.20619 0.95618 0.87774 0.91848 1.42420 1.56925 1.10871 1.27401 1.19237 1.23026 0.87883 1.07021 0.91180 1.24744 1.00042 0.98290 0.97830 1.69669 1.36129 1.36157 1.15931 0.86137 0.77526 0.85063 0.77564 1.20617 1.21908 1.21902 1.22602 1.02132 0.93541 0.98041 1.22262 0.99720 0.98926 0.81482 1.48739 1.65841 1.08050 1.11628 1.17701 0.77787 0.83137 0.85295 1.90827 1.46197 1.85550 1.17715 1.19901 0.96365 0.93764 0.99073 1.21544 0.97312 0.97148 0.94440 1.20916 0.99066 0.92876 0.99386 1.21129 0.93207 0.99957 0.96908 1.18124 0.95627 0.92820 0.96672 1.21885 0.95354 1.00056 1.00907 1.22318 0.97232 0.93238 0.93620 1.67594 1.27607 1.01916 1.22304 1.23754 0.87207 0.99227 0.91076 1.18777 0.96701 0.93382 0.99470 1.22591 1.01981 0.77198 0.98451 0.93742 0.91010 0.92679 0.96103 0.95853 0.77991 0.93506 0.90074 0.90445 0.91366 0.90880 0.84560 0.84788 0.84729 0.84321 0.82895 0.80483 0.88903 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.30 37.16 0.31 -1.77 16 2 C -0.08 -1.19 0.64 -152.82 -0.10 -1.28 16 3 C 0.17 3.18 5.11 -4.04 -0.02 3.16 16 4 N -0.73 -17.86 5.16 -59.91 -0.31 -18.17 16 5 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 6 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 9 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 C -0.12 -1.35 6.09 -25.35 -0.15 -1.51 16 14 C 0.10 0.97 5.31 -2.98 -0.02 0.96 16 15 N -0.61 -8.19 3.19 -171.19 -0.55 -8.74 16 16 C 0.57 8.47 7.19 -12.46 -0.09 8.38 16 17 O -0.53 -9.71 14.90 5.28 0.08 -9.63 16 18 C -0.09 -1.04 5.42 -104.67 -0.57 -1.61 16 19 C -0.09 -0.75 8.24 -39.13 -0.32 -1.08 16 20 C -0.10 -0.70 9.93 -39.98 -0.40 -1.10 16 21 C -0.09 -0.69 9.79 -39.47 -0.39 -1.07 16 22 C -0.03 -0.27 5.74 -106.84 -0.61 -0.89 16 23 C -0.16 -1.41 9.88 -39.37 -0.39 -1.80 16 24 C 0.08 0.81 11.07 -17.97 -0.20 0.61 16 25 N -0.49 -6.59 10.30 -13.21 -0.14 -6.72 16 26 C 0.16 2.23 10.41 -17.06 -0.18 2.05 16 27 C -0.08 -1.01 5.76 -106.59 -0.61 -1.62 16 28 C 0.12 1.90 5.68 -2.32 -0.01 1.88 16 29 H 0.04 0.66 8.07 -51.93 -0.42 0.25 16 30 H 0.07 1.37 6.69 -51.93 -0.35 1.02 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.02 0.39 8.11 -51.93 -0.42 -0.03 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.39 10.01 6.21 -40.82 -0.25 9.75 16 35 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.08 0.79 7.85 -51.93 -0.41 0.39 16 37 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 38 H 0.07 0.53 7.13 -51.93 -0.37 0.16 16 39 H 0.07 0.63 7.33 -51.93 -0.38 0.25 16 40 H 0.14 0.98 6.08 -52.49 -0.32 0.66 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 43 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 45 H 0.18 2.75 5.91 -52.48 -0.31 2.44 16 46 H 0.09 1.77 7.71 -51.93 -0.40 1.37 16 47 H 0.08 1.25 8.02 -51.92 -0.42 0.84 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -33.85 379.16 -10.03 -43.88 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.54 Total: 7.68 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -4.00 Total: -3.90 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.27 Total: -61.11 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.85 -10.03 -43.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754709062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.300 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds