Wall clock time and date at job start Tue Mar 31 2020 22:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38395 * 120.86016 * 2 1 4 4 C 1.38306 * 119.30936 * 179.97438 * 3 2 1 5 5 N 1.31960 * 121.07786 * 0.02562 * 4 3 2 6 6 C 1.31660 * 121.87957 * 359.97438 * 5 4 3 7 7 C 1.39556 * 120.56831 * 359.74330 * 6 5 4 8 8 C 1.47840 * 120.56284 * 180.27941 * 7 6 5 9 9 O 1.21551 * 119.99936 * 186.13619 * 8 7 6 10 10 N 1.34775 * 119.99903 * 6.13698 * 8 7 6 11 11 C 1.46506 * 119.99860 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46728 * 179.97438 * 11 10 8 13 13 C 1.38231 * 119.99621 * 269.71972 * 12 11 10 14 14 C 1.38236 * 119.99466 * 179.76951 * 13 12 11 15 15 C 1.38228 * 120.00233 * 0.50990 * 14 13 12 16 16 C 1.50709 * 120.00241 * 179.72290 * 15 14 13 17 17 H 1.08991 * 109.47404 * 200.01959 * 16 15 14 18 18 C 1.53006 * 109.46698 * 80.01932 * 16 15 14 19 19 N 1.46497 * 109.47005 * 320.02500 * 16 15 14 20 20 C 1.36937 * 119.99949 * 205.00070 * 19 16 15 21 21 H 1.08003 * 119.99923 * 359.97438 * 20 19 16 22 22 C 1.38810 * 120.00075 * 179.97438 * 20 19 16 23 23 N 1.31615 * 120.00165 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99894 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46781 * 90.00000 * 24 22 20 26 26 H 1.48498 * 109.46941 * 209.99729 * 24 22 20 27 27 H 1.48497 * 109.47073 * 330.00095 * 24 22 20 28 28 C 1.38236 * 120.00208 * 359.74628 * 15 14 13 29 29 C 1.38230 * 120.00107 * 90.00367 * 12 11 10 30 30 H 1.08999 * 109.46892 * 96.30303 * 1 2 3 31 31 H 1.09000 * 109.46881 * 336.30745 * 1 2 3 32 32 H 1.08995 * 109.47050 * 216.30801 * 1 2 3 33 33 H 1.08003 * 120.34720 * 359.95710 * 3 2 1 34 34 H 1.08004 * 119.46588 * 179.97438 * 4 3 2 35 35 H 1.08008 * 119.71398 * 180.02562 * 6 5 4 36 36 H 0.96999 * 119.99807 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.46506 * 299.99514 * 11 10 8 38 38 H 1.08999 * 109.47319 * 59.99643 * 11 10 8 39 39 H 1.08003 * 120.00210 * 0.02562 * 13 12 11 40 40 H 1.08005 * 119.99819 * 180.23115 * 14 13 12 41 41 H 1.08998 * 109.46559 * 179.97438 * 18 16 15 42 42 H 1.08991 * 109.47215 * 300.00143 * 18 16 15 43 43 H 1.08998 * 109.46718 * 60.00327 * 18 16 15 44 44 H 0.97002 * 120.00373 * 24.99329 * 19 16 15 45 45 H 0.97005 * 120.00339 * 180.02562 * 23 22 20 46 46 H 1.07996 * 120.00248 * 179.97438 * 28 15 14 47 47 H 1.08007 * 120.00340 * 359.97438 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0024 0.0005 6 6 3.6196 -1.1536 0.0005 7 6 2.2249 -1.2017 0.0059 8 6 1.5175 -2.4999 0.0121 9 8 0.3073 -2.5330 -0.0958 10 7 2.2146 -3.6466 0.1374 11 6 1.5136 -4.9330 0.1430 12 6 2.5144 -6.0497 0.2937 13 6 3.0769 -6.6296 -0.8280 14 6 3.9985 -7.6506 -0.6896 15 6 4.3496 -8.0988 0.5700 16 6 5.3496 -9.2162 0.7207 17 1 5.2427 -9.6690 1.7063 18 6 6.7657 -8.6573 0.5670 19 7 5.1097 -10.2286 -0.3106 20 6 5.5020 -11.5240 -0.1028 21 1 5.9887 -11.7992 0.8212 22 6 5.2741 -12.4834 -1.0797 23 7 4.6806 -12.1482 -2.2056 24 14 5.8100 -14.2504 -0.7965 25 1 4.7063 -15.0047 -0.1499 26 1 6.1442 -14.8810 -2.0987 27 1 7.0055 -14.2699 0.0843 28 6 3.7831 -7.5224 1.6915 29 6 2.8655 -6.4979 1.5533 30 1 -0.3633 -0.1128 -1.0215 31 1 -0.3633 0.9411 0.4130 32 1 -0.3633 -0.8281 0.6085 33 1 1.6967 2.1345 -0.0007 34 1 4.1559 2.0762 0.0001 35 1 4.1871 -2.0727 0.0010 36 1 3.1804 -3.6201 0.2231 37 1 0.8105 -4.9600 0.9755 38 1 0.9715 -5.0555 -0.7946 39 1 2.7995 -6.2822 -1.8122 40 1 4.4408 -8.1012 -1.5658 41 1 7.4889 -9.4654 0.6764 42 1 6.8725 -8.2045 -0.4186 43 1 6.9442 -7.9040 1.3343 44 1 4.6727 -9.9814 -1.1406 45 1 4.5210 -12.8187 -2.8882 46 1 4.0571 -7.8728 2.6756 47 1 2.4228 -6.0476 2.4296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754947564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:15 Heat of formation + Delta-G solvation = 32.592408 kcal Electronic energy + Delta-G solvation = -27509.195296 eV Core-core repulsion = 23656.840837 eV Total energy + Delta-G solvation = -3852.354459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11966 -39.66206 -38.97189 -36.11416 -34.86455 -34.02015 -32.60399 -31.89106 -30.75001 -30.23058 -28.52877 -28.13460 -26.16437 -24.62434 -23.88140 -22.75262 -22.48508 -21.62526 -21.07686 -19.75708 -18.30011 -17.46845 -17.14496 -16.71119 -15.97843 -15.77235 -15.70982 -15.21731 -15.09509 -14.72694 -14.43859 -14.16234 -13.95145 -13.42411 -13.39099 -13.21877 -13.12025 -13.09970 -13.07383 -12.86262 -12.52736 -12.37109 -12.30823 -11.94641 -11.56841 -11.25279 -10.94533 -10.85919 -10.65724 -10.42895 -10.31155 -10.02185 -9.98190 -9.74263 -9.70544 -9.68413 -9.29585 -9.00254 -8.67983 -8.36473 -7.02390 -5.80903 -3.09812 0.23191 0.75432 1.41451 1.64948 2.52997 2.93542 3.41313 3.41627 3.46465 3.48078 3.86141 4.02693 4.22975 4.26127 4.40317 4.55951 4.56067 4.68427 4.94428 4.94725 5.09245 5.17811 5.19118 5.26996 5.35949 5.36949 5.40848 5.53550 5.55171 5.68924 5.71505 5.75116 5.92812 5.93476 5.99233 6.11696 6.18086 6.21646 6.27984 6.32184 6.47169 6.58910 6.68068 6.73435 6.92370 7.12898 7.17505 7.24362 7.42605 7.66352 7.86767 8.37304 9.48737 10.04063 10.39170 11.41671 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023961 B = 0.001873 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.291884 B =14944.360200 C =15423.119987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.019 3.981 3 C -0.186 4.186 4 C 0.123 3.877 5 N -0.492 5.492 6 C 0.141 3.859 7 C -0.194 4.194 8 C 0.562 3.438 9 O -0.531 6.531 10 N -0.717 5.717 11 C 0.168 3.832 12 C -0.133 4.133 13 C -0.098 4.098 14 C -0.106 4.106 15 C -0.052 4.052 16 C 0.203 3.797 17 H 0.056 0.944 18 C -0.159 4.159 19 N -0.721 5.721 20 C -0.240 4.240 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.121 4.121 29 C -0.101 4.101 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.402 0.598 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.129 0.871 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.038 0.962 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.121 0.879 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 27.193 6.058 28.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.011 3.989 3 C -0.206 4.206 4 C -0.032 4.032 5 N -0.201 5.201 6 C -0.018 4.018 7 C -0.199 4.199 8 C 0.349 3.651 9 O -0.410 6.410 10 N -0.369 5.369 11 C 0.046 3.954 12 C -0.134 4.134 13 C -0.117 4.117 14 C -0.124 4.124 15 C -0.053 4.053 16 C 0.093 3.907 17 H 0.074 0.926 18 C -0.220 4.220 19 N -0.364 5.364 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.140 4.140 29 C -0.120 4.120 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.160 0.840 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.237 0.763 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.147 0.853 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.139 0.861 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.174 26.971 6.029 28.117 hybrid contribution -0.193 -1.000 -0.213 1.040 sum -5.367 25.972 5.815 27.151 Atomic orbital electron populations 1.21114 0.89014 1.03663 1.04237 1.20522 0.97618 0.91316 0.89452 1.22102 0.95585 0.98742 1.04125 1.23010 0.91794 0.96489 0.91921 1.67722 1.40833 0.98295 1.13248 1.23024 0.90398 0.96724 0.91669 1.20881 0.95223 0.94342 1.09449 1.18024 0.86946 0.83422 0.76745 1.90741 1.13474 1.87061 1.49679 1.46093 1.11105 1.05617 1.74074 1.20188 0.92917 0.79358 1.02977 1.19621 1.00641 0.99219 0.93897 1.21024 0.96496 0.96380 0.97757 1.21096 0.97389 0.96006 0.97908 1.20548 0.96153 0.95669 0.92917 1.19259 0.90317 0.86844 0.94232 0.92610 1.22420 0.99212 1.00049 1.00279 1.42522 1.71601 1.04946 1.17287 1.19238 1.31728 0.85096 1.01054 0.91061 1.24747 1.01399 0.98202 0.96531 1.69654 1.47678 1.33327 1.07335 0.86183 0.78145 0.84975 0.76833 1.21707 1.21763 1.20730 1.21021 0.97553 0.96928 0.98498 1.20926 0.97719 0.97126 0.96234 0.89896 0.91766 0.88183 0.84049 0.82168 0.82350 0.76288 0.90578 0.90477 0.86285 0.85338 0.92373 0.93308 0.94324 0.77991 0.93446 0.86093 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 8.86 36.00 0.32 -0.65 16 2 C 0.02 0.16 5.95 -103.91 -0.62 -0.45 16 3 C -0.19 -1.22 9.78 -39.50 -0.39 -1.61 16 4 C 0.12 0.87 11.17 -17.47 -0.20 0.68 16 5 N -0.49 -4.57 10.35 -12.91 -0.13 -4.71 16 6 C 0.14 1.22 10.70 -17.13 -0.18 1.04 16 7 C -0.19 -1.82 5.89 -104.82 -0.62 -2.44 16 8 C 0.56 6.00 7.72 -12.33 -0.10 5.91 16 9 O -0.53 -7.00 13.50 5.32 0.07 -6.93 16 10 N -0.72 -6.73 5.50 -62.43 -0.34 -7.07 16 11 C 0.17 1.76 5.80 -5.19 -0.03 1.73 16 12 C -0.13 -1.59 5.25 -104.63 -0.55 -2.14 16 13 C -0.10 -1.32 9.70 -39.58 -0.38 -1.70 16 14 C -0.11 -1.71 9.06 -39.59 -0.36 -2.07 16 15 C -0.05 -0.86 4.95 -104.62 -0.52 -1.38 16 16 C 0.20 3.94 3.09 -69.08 -0.21 3.72 16 17 H 0.06 1.09 7.94 -51.93 -0.41 0.68 16 18 C -0.16 -2.79 9.47 37.16 0.35 -2.44 16 19 N -0.72 -17.61 5.07 -54.55 -0.28 -17.88 16 20 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 21 H 0.07 1.88 7.83 -52.48 -0.41 1.46 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 24 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 C -0.12 -1.71 9.67 -39.58 -0.38 -2.10 16 29 C -0.10 -1.23 9.70 -39.59 -0.38 -1.62 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.36 8.07 -51.93 -0.42 -0.06 16 32 H 0.10 0.98 5.93 -51.93 -0.31 0.67 16 33 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 34 H 0.16 0.65 8.06 -52.48 -0.42 0.23 16 35 H 0.16 1.05 6.47 -52.48 -0.34 0.71 16 36 H 0.40 3.11 6.57 -40.82 -0.27 2.84 16 37 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.13 2.26 6.92 -52.48 -0.36 1.89 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.38 9.90 6.06 -40.82 -0.25 9.65 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.12 1.52 8.04 -52.49 -0.42 1.10 16 47 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 LS Contribution 393.65 15.07 5.93 5.93 Total: -1.00 -32.43 393.65 -10.09 -42.52 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -6.55 Total: 10.68 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -4.49 Total: -12.64 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.03 Total: -56.67 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: 0.07 Total: -6.93 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.43 -10.09 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754947564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.113 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds