Wall clock time and date at job start Tue Mar 31 2020 22:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38395 * 120.86016 * 2 1 4 4 C 1.38306 * 119.30936 * 179.97438 * 3 2 1 5 5 N 1.31960 * 121.07786 * 0.02562 * 4 3 2 6 6 C 1.31660 * 121.87957 * 359.97438 * 5 4 3 7 7 C 1.39556 * 120.56831 * 359.74330 * 6 5 4 8 8 C 1.47840 * 120.56284 * 180.27941 * 7 6 5 9 9 O 1.21551 * 119.99936 * 186.13619 * 8 7 6 10 10 N 1.34775 * 119.99903 * 6.13698 * 8 7 6 11 11 C 1.46506 * 119.99860 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46728 * 179.97438 * 11 10 8 13 13 C 1.38231 * 119.99621 * 269.71972 * 12 11 10 14 14 C 1.38236 * 119.99466 * 179.76951 * 13 12 11 15 15 C 1.38228 * 120.00233 * 0.50990 * 14 13 12 16 16 C 1.50709 * 120.00241 * 179.72290 * 15 14 13 17 17 H 1.08991 * 109.47404 * 200.01959 * 16 15 14 18 18 C 1.53006 * 109.46698 * 80.01932 * 16 15 14 19 19 N 1.46497 * 109.47005 * 320.02500 * 16 15 14 20 20 C 1.36937 * 119.99949 * 205.00070 * 19 16 15 21 21 H 1.08003 * 119.99923 * 359.97438 * 20 19 16 22 22 C 1.38810 * 120.00075 * 179.97438 * 20 19 16 23 23 N 1.31615 * 120.00165 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99894 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46781 * 90.00000 * 24 22 20 26 26 H 1.48498 * 109.46941 * 209.99729 * 24 22 20 27 27 H 1.48497 * 109.47073 * 330.00095 * 24 22 20 28 28 C 1.38236 * 120.00208 * 359.74628 * 15 14 13 29 29 C 1.38230 * 120.00107 * 90.00367 * 12 11 10 30 30 H 1.08999 * 109.46892 * 96.30303 * 1 2 3 31 31 H 1.09000 * 109.46881 * 336.30745 * 1 2 3 32 32 H 1.08995 * 109.47050 * 216.30801 * 1 2 3 33 33 H 1.08003 * 120.34720 * 359.95710 * 3 2 1 34 34 H 1.08004 * 119.46588 * 179.97438 * 4 3 2 35 35 H 1.08008 * 119.71398 * 180.02562 * 6 5 4 36 36 H 0.96999 * 119.99807 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.46506 * 299.99514 * 11 10 8 38 38 H 1.08999 * 109.47319 * 59.99643 * 11 10 8 39 39 H 1.08003 * 120.00210 * 0.02562 * 13 12 11 40 40 H 1.08005 * 119.99819 * 180.23115 * 14 13 12 41 41 H 1.08998 * 109.46559 * 179.97438 * 18 16 15 42 42 H 1.08991 * 109.47215 * 300.00143 * 18 16 15 43 43 H 1.08998 * 109.46718 * 60.00327 * 18 16 15 44 44 H 0.97002 * 120.00373 * 24.99329 * 19 16 15 45 45 H 0.97005 * 120.00339 * 180.02562 * 23 22 20 46 46 H 1.07996 * 120.00248 * 179.97438 * 28 15 14 47 47 H 1.08007 * 120.00340 * 359.97438 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0024 0.0005 6 6 3.6196 -1.1536 0.0005 7 6 2.2249 -1.2017 0.0059 8 6 1.5175 -2.4999 0.0121 9 8 0.3073 -2.5330 -0.0958 10 7 2.2146 -3.6466 0.1374 11 6 1.5136 -4.9330 0.1430 12 6 2.5144 -6.0497 0.2937 13 6 3.0769 -6.6296 -0.8280 14 6 3.9985 -7.6506 -0.6896 15 6 4.3496 -8.0988 0.5700 16 6 5.3496 -9.2162 0.7207 17 1 5.2427 -9.6690 1.7063 18 6 6.7657 -8.6573 0.5670 19 7 5.1097 -10.2286 -0.3106 20 6 5.5020 -11.5240 -0.1028 21 1 5.9887 -11.7992 0.8212 22 6 5.2741 -12.4834 -1.0797 23 7 4.6806 -12.1482 -2.2056 24 14 5.8100 -14.2504 -0.7965 25 1 4.7063 -15.0047 -0.1499 26 1 6.1442 -14.8810 -2.0987 27 1 7.0055 -14.2699 0.0843 28 6 3.7831 -7.5224 1.6915 29 6 2.8655 -6.4979 1.5533 30 1 -0.3633 -0.1128 -1.0215 31 1 -0.3633 0.9411 0.4130 32 1 -0.3633 -0.8281 0.6085 33 1 1.6967 2.1345 -0.0007 34 1 4.1559 2.0762 0.0001 35 1 4.1871 -2.0727 0.0010 36 1 3.1804 -3.6201 0.2231 37 1 0.8105 -4.9600 0.9755 38 1 0.9715 -5.0555 -0.7946 39 1 2.7995 -6.2822 -1.8122 40 1 4.4408 -8.1012 -1.5658 41 1 7.4889 -9.4654 0.6764 42 1 6.8725 -8.2045 -0.4186 43 1 6.9442 -7.9040 1.3343 44 1 4.6727 -9.9814 -1.1406 45 1 4.5210 -12.8187 -2.8882 46 1 4.0571 -7.8728 2.6756 47 1 2.4228 -6.0476 2.4296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754947564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:14 Heat of formation + Delta-G solvation = 13.111754 kcal Electronic energy + Delta-G solvation = -27510.040041 eV Core-core repulsion = 23656.840837 eV Total energy + Delta-G solvation = -3853.199203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.79576 -40.66907 -39.86805 -37.46752 -35.98887 -34.71261 -34.17754 -32.82261 -31.87910 -31.45867 -30.03662 -28.91333 -27.16752 -25.90112 -25.19638 -23.83380 -23.31311 -22.76008 -21.84727 -21.08940 -19.40122 -19.02796 -17.87320 -17.33244 -17.13593 -16.81444 -16.61354 -16.38655 -16.11219 -15.89658 -15.59931 -15.15477 -15.03852 -14.83992 -14.57536 -14.44134 -14.24325 -13.85168 -13.81901 -13.68210 -13.54996 -13.48881 -13.33959 -13.02670 -12.92841 -12.77374 -12.70350 -12.46542 -12.14761 -12.01607 -11.60126 -11.52915 -11.15548 -11.00114 -10.63812 -10.42810 -10.28292 -10.06779 -9.78571 -9.54431 -9.02410 -7.94275 -5.22580 -0.38332 0.17457 0.30568 0.53719 1.47160 1.48562 1.56842 1.78855 2.11361 2.55978 2.80036 2.91824 3.32002 3.40202 3.63975 3.66635 3.70368 3.82725 3.87794 3.99390 4.01637 4.05453 4.16480 4.36042 4.42171 4.54636 4.56744 4.60273 4.65838 4.72682 4.77452 4.77940 4.80557 4.84079 5.01646 5.07375 5.12678 5.13722 5.22864 5.27677 5.41625 5.43077 5.50528 5.56472 5.61737 5.63392 5.84649 6.10209 6.28072 6.41952 6.85236 7.08866 7.34165 8.09268 8.32935 9.29258 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023961 B = 0.001873 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.291884 B =14944.360200 C =15423.119987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.005 3.995 3 C -0.178 4.178 4 C 0.121 3.879 5 N -0.517 5.517 6 C 0.137 3.863 7 C -0.209 4.209 8 C 0.562 3.438 9 O -0.561 6.561 10 N -0.709 5.709 11 C 0.174 3.826 12 C -0.117 4.117 13 C -0.098 4.098 14 C -0.124 4.124 15 C -0.073 4.073 16 C 0.198 3.802 17 H 0.054 0.946 18 C -0.148 4.148 19 N -0.735 5.735 20 C -0.238 4.238 21 H 0.077 0.923 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.972 3.028 25 H -0.289 1.289 26 H -0.297 1.297 27 H -0.268 1.268 28 C -0.121 4.121 29 C -0.092 4.092 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.173 0.827 34 H 0.191 0.809 35 H 0.172 0.828 36 H 0.410 0.590 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.103 0.897 41 H 0.041 0.959 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.374 0.626 45 H 0.250 0.750 46 H 0.138 0.862 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 29.574 7.808 31.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.004 4.004 3 C -0.197 4.197 4 C -0.034 4.034 5 N -0.226 5.226 6 C -0.022 4.022 7 C -0.214 4.214 8 C 0.350 3.650 9 O -0.441 6.441 10 N -0.361 5.361 11 C 0.051 3.949 12 C -0.117 4.117 13 C -0.116 4.116 14 C -0.142 4.142 15 C -0.074 4.074 16 C 0.090 3.910 17 H 0.072 0.928 18 C -0.208 4.208 19 N -0.376 5.376 20 C -0.369 4.369 21 H 0.095 0.905 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.801 3.199 25 H -0.216 1.216 26 H -0.224 1.224 27 H -0.193 1.193 28 C -0.140 4.140 29 C -0.110 4.110 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.190 0.810 34 H 0.208 0.792 35 H 0.189 0.811 36 H 0.248 0.752 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.150 0.850 40 H 0.121 0.879 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.208 0.792 45 H 0.059 0.941 46 H 0.156 0.844 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.179 29.381 7.830 30.844 hybrid contribution -0.200 -1.545 -0.699 1.708 sum -5.379 27.836 7.131 29.234 Atomic orbital electron populations 1.21041 0.88846 1.04061 1.03590 1.20775 0.97999 0.91867 0.89737 1.22413 0.95483 0.99249 1.02552 1.23573 0.92389 0.96909 0.90516 1.67768 1.41593 0.99047 1.14184 1.23209 0.90203 0.97339 0.91445 1.20847 0.95590 0.93976 1.11020 1.18246 0.86629 0.84037 0.76078 1.90733 1.14717 1.87500 1.51166 1.45959 1.11512 1.04972 1.73633 1.20084 0.92472 0.79226 1.03102 1.19732 0.99744 0.98820 0.93421 1.21132 0.95781 0.95610 0.99116 1.20968 0.98852 0.97366 0.97045 1.20330 0.96976 0.96043 0.94069 1.19432 0.92158 0.86864 0.92528 0.92772 1.22251 0.97409 1.00153 1.01002 1.42732 1.71496 1.05225 1.18175 1.19636 1.30168 0.86349 1.00781 0.90463 1.25546 1.02619 1.02159 0.96650 1.69816 1.49834 1.34159 1.08279 0.85158 0.78026 0.80275 0.76421 1.21591 1.22400 1.19320 1.21194 0.97431 0.97081 0.98272 1.21224 0.96525 0.96023 0.97267 0.90494 0.89344 0.90328 0.80980 0.79224 0.81116 0.75229 0.89974 0.90886 0.85040 0.87881 0.93953 0.94048 0.91069 0.79246 0.94127 0.84443 0.83462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 8.86 71.24 0.63 -1.11 16 2 C 0.00 0.07 5.95 -19.40 -0.12 -0.04 16 3 C -0.18 -1.85 9.78 22.32 0.22 -1.63 16 4 C 0.12 1.39 11.17 84.69 0.95 2.34 16 5 N -0.52 -8.67 10.35 -194.75 -2.01 -10.68 16 6 C 0.14 2.19 10.70 85.04 0.91 3.10 16 7 C -0.21 -3.70 5.89 -19.99 -0.12 -3.81 16 8 C 0.56 11.53 7.72 86.79 0.67 12.20 16 9 O -0.56 -14.59 13.50 -3.87 -0.05 -14.64 16 10 N -0.71 -12.20 5.50 -469.70 -2.58 -14.79 16 11 C 0.17 3.33 5.80 85.63 0.50 3.83 16 12 C -0.12 -2.56 5.25 -19.87 -0.10 -2.66 16 13 C -0.10 -2.57 9.70 22.27 0.22 -2.35 16 14 C -0.12 -4.08 9.06 22.27 0.20 -3.88 16 15 C -0.07 -2.42 4.95 -19.86 -0.10 -2.52 16 16 C 0.20 7.72 3.09 44.25 0.14 7.85 16 17 H 0.05 2.10 7.94 -2.39 -0.02 2.08 16 18 C -0.15 -5.16 9.47 71.98 0.68 -4.48 16 19 N -0.73 -36.86 5.07 -326.49 -1.66 -38.52 16 20 C -0.24 -13.11 9.93 84.03 0.83 -12.27 16 21 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 22 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 23 N -0.97 -59.57 13.06 21.65 0.28 -59.29 16 24 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 26 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 28 C -0.12 -3.19 9.67 22.27 0.22 -2.97 16 29 C -0.09 -1.98 9.70 22.27 0.22 -1.77 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 0.80 8.07 -2.39 -0.02 0.78 16 32 H 0.08 1.52 5.93 -2.39 -0.01 1.50 16 33 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 34 H 0.19 0.89 8.06 -2.91 -0.02 0.86 16 35 H 0.17 2.04 6.47 -2.91 -0.02 2.02 16 36 H 0.41 5.61 6.57 -92.71 -0.61 5.00 16 37 H 0.08 1.54 8.09 -2.39 -0.02 1.52 16 38 H 0.07 1.51 8.08 -2.39 -0.02 1.49 16 39 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 40 H 0.10 3.87 6.92 -2.91 -0.02 3.85 16 41 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.37 20.14 6.06 -92.71 -0.56 19.58 16 45 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 46 H 0.14 3.11 8.04 -2.91 -0.02 3.08 16 47 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -71.71 393.65 2.24 -69.47 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.17 Total: 34.37 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 6.41 Total: -14.18 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -5.97 Total: -123.27 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.05 Total: -14.64 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -71.71 2.24 -69.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754947564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.578 kcal (2) G-P(sol) polarization free energy of solvation -71.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds