Wall clock time and date at job start Tue Mar 31 2020 22:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38395 * 120.86016 * 2 1 4 4 C 1.38306 * 119.30936 * 179.97438 * 3 2 1 5 5 N 1.31960 * 121.07786 * 0.02562 * 4 3 2 6 6 C 1.31660 * 121.87957 * 359.97438 * 5 4 3 7 7 C 1.39556 * 120.56831 * 359.74330 * 6 5 4 8 8 C 1.47840 * 120.56284 * 180.27941 * 7 6 5 9 9 O 1.21551 * 119.99936 * 186.13619 * 8 7 6 10 10 N 1.34775 * 119.99903 * 6.13698 * 8 7 6 11 11 C 1.46506 * 119.99860 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46728 * 179.97438 * 11 10 8 13 13 C 1.38231 * 119.99621 * 269.71972 * 12 11 10 14 14 C 1.38243 * 119.99582 * 179.81575 * 13 12 11 15 15 C 1.38227 * 119.99843 * 0.41740 * 14 13 12 16 16 C 1.50702 * 119.99962 * 179.79296 * 15 14 13 17 17 H 1.08999 * 109.47577 * 160.02017 * 16 15 14 18 18 C 1.53003 * 109.47244 * 280.02568 * 16 15 14 19 19 N 1.46502 * 109.47048 * 40.02164 * 16 15 14 20 20 C 1.36943 * 119.99847 * 155.00192 * 19 16 15 21 21 H 1.07994 * 120.00155 * 359.97438 * 20 19 16 22 22 C 1.38813 * 119.99815 * 180.02562 * 20 19 16 23 23 N 1.31620 * 120.00116 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00091 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46964 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47016 * 119.99877 * 24 22 20 27 27 H 1.48497 * 109.46945 * 239.99895 * 24 22 20 28 28 C 1.38234 * 120.00547 * 359.81394 * 15 14 13 29 29 C 1.38230 * 120.00107 * 90.00367 * 12 11 10 30 30 H 1.08999 * 109.46892 * 96.30303 * 1 2 3 31 31 H 1.09000 * 109.46881 * 336.30745 * 1 2 3 32 32 H 1.08995 * 109.47050 * 216.30801 * 1 2 3 33 33 H 1.08003 * 120.34720 * 359.95710 * 3 2 1 34 34 H 1.08004 * 119.46588 * 179.97438 * 4 3 2 35 35 H 1.08008 * 119.71398 * 180.02562 * 6 5 4 36 36 H 0.96999 * 119.99807 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.46506 * 299.99514 * 11 10 8 38 38 H 1.08999 * 109.47319 * 59.99643 * 11 10 8 39 39 H 1.08003 * 120.00210 * 0.02562 * 13 12 11 40 40 H 1.08002 * 119.99532 * 180.21241 * 14 13 12 41 41 H 1.08998 * 109.46864 * 59.99600 * 18 16 15 42 42 H 1.08994 * 109.47324 * 179.97438 * 18 16 15 43 43 H 1.08999 * 109.47108 * 299.99985 * 18 16 15 44 44 H 0.96994 * 120.00218 * 335.00176 * 19 16 15 45 45 H 0.96997 * 120.00305 * 179.97438 * 23 22 20 46 46 H 1.08001 * 120.00594 * 179.97438 * 28 15 14 47 47 H 1.08001 * 119.99964 * 359.96738 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0024 0.0005 6 6 3.6196 -1.1536 0.0005 7 6 2.2249 -1.2017 0.0059 8 6 1.5175 -2.4999 0.0121 9 8 0.3073 -2.5330 -0.0958 10 7 2.2146 -3.6466 0.1374 11 6 1.5136 -4.9330 0.1430 12 6 2.5144 -6.0497 0.2937 13 6 3.0769 -6.6296 -0.8280 14 6 3.9978 -7.6513 -0.6896 15 6 4.3496 -8.0988 0.5700 16 6 5.3500 -9.2157 0.7207 17 1 5.7656 -9.1979 1.7282 18 6 4.6562 -10.5578 0.4789 19 7 6.4282 -9.0406 -0.2555 20 6 7.6654 -9.5749 -0.0124 21 1 7.8464 -10.1250 0.8991 22 6 8.6872 -9.4084 -0.9371 23 7 8.4668 -8.7375 -2.0478 24 14 10.3751 -10.1366 -0.6052 25 1 10.3629 -10.8380 0.7037 26 1 10.7184 -11.1010 -1.6810 27 1 11.3859 -9.0492 -0.5741 28 6 3.7835 -7.5221 1.6915 29 6 2.8655 -6.4979 1.5533 30 1 -0.3633 -0.1128 -1.0215 31 1 -0.3633 0.9411 0.4130 32 1 -0.3633 -0.8281 0.6085 33 1 1.6967 2.1345 -0.0007 34 1 4.1559 2.0762 0.0001 35 1 4.1871 -2.0727 0.0010 36 1 3.1804 -3.6201 0.2231 37 1 0.8105 -4.9600 0.9755 38 1 0.9715 -5.0555 -0.7946 39 1 2.7995 -6.2822 -1.8122 40 1 4.4398 -8.1021 -1.5659 41 1 4.2407 -10.5757 -0.5286 42 1 5.3799 -11.3657 0.5874 43 1 3.8540 -10.6882 1.2051 44 1 6.2658 -8.5462 -1.0741 45 1 9.1809 -8.6209 -2.6938 46 1 4.0581 -7.8720 2.6757 47 1 2.4229 -6.0475 2.4295 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754947565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:19 Heat of formation + Delta-G solvation = 32.464754 kcal Electronic energy + Delta-G solvation = -27624.626794 eV Core-core repulsion = 23772.266800 eV Total energy + Delta-G solvation = -3852.359994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.06187 -39.64110 -38.94421 -36.10132 -34.83942 -33.96712 -32.58436 -31.85212 -30.74992 -30.21622 -28.50774 -28.10687 -26.14498 -24.57192 -23.87904 -22.72853 -22.45573 -21.61740 -21.02654 -19.75604 -18.25125 -17.46554 -17.09868 -16.64291 -15.96147 -15.75081 -15.67576 -15.18243 -15.06694 -14.71287 -14.42573 -14.12524 -13.90047 -13.50218 -13.38766 -13.18838 -13.11298 -13.03357 -12.94730 -12.87249 -12.50859 -12.31088 -12.27213 -11.95926 -11.67871 -11.18749 -10.94392 -10.87430 -10.64887 -10.38424 -10.29381 -10.00346 -9.92439 -9.72401 -9.66898 -9.61937 -9.26056 -9.00989 -8.68130 -8.36598 -7.02581 -5.81401 -3.10244 0.29606 0.82293 1.41641 1.64831 2.57737 2.97662 3.40791 3.46519 3.48168 3.48679 3.93841 4.03871 4.29471 4.31722 4.46154 4.55774 4.60206 4.70851 4.94278 5.00957 5.15793 5.17411 5.24217 5.26733 5.35826 5.40700 5.46305 5.53039 5.54493 5.68802 5.74465 5.76574 5.92635 5.97970 5.99201 6.16387 6.21537 6.23031 6.28164 6.32157 6.47298 6.58856 6.68085 6.73468 6.92320 7.12810 7.20855 7.24876 7.50938 7.66702 7.90335 8.36864 9.48436 10.03637 10.38834 11.41258 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013206 B = 0.002242 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.794942 B =12486.288588 C =14087.253386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.019 3.981 3 C -0.187 4.187 4 C 0.124 3.876 5 N -0.491 5.491 6 C 0.142 3.858 7 C -0.195 4.195 8 C 0.563 3.437 9 O -0.533 6.533 10 N -0.718 5.718 11 C 0.169 3.831 12 C -0.133 4.133 13 C -0.098 4.098 14 C -0.105 4.105 15 C -0.052 4.052 16 C 0.203 3.797 17 H 0.056 0.944 18 C -0.160 4.160 19 N -0.721 5.721 20 C -0.239 4.239 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.121 4.121 29 C -0.102 4.102 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.141 0.859 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.403 0.597 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.129 0.871 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.038 0.962 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.121 0.879 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.813 16.757 5.617 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.206 4.206 4 C -0.032 4.032 5 N -0.199 5.199 6 C -0.017 4.017 7 C -0.200 4.200 8 C 0.350 3.650 9 O -0.412 6.412 10 N -0.369 5.369 11 C 0.046 3.954 12 C -0.134 4.134 13 C -0.117 4.117 14 C -0.124 4.124 15 C -0.053 4.053 16 C 0.093 3.907 17 H 0.074 0.926 18 C -0.220 4.220 19 N -0.364 5.364 20 C -0.370 4.370 21 H 0.090 0.910 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.218 1.218 28 C -0.140 4.140 29 C -0.120 4.120 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.159 0.841 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.239 0.761 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.147 0.853 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.220 0.780 45 H 0.065 0.935 46 H 0.139 0.861 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.609 16.640 5.606 24.170 hybrid contribution 0.680 -0.231 -0.200 0.745 sum -15.930 16.409 5.406 23.500 Atomic orbital electron populations 1.21104 0.89065 1.03601 1.04175 1.20506 0.97564 0.91323 0.89582 1.22093 0.95589 0.98703 1.04259 1.23025 0.91779 0.96526 0.91825 1.67739 1.40813 0.98282 1.13098 1.23063 0.90394 0.96802 0.91404 1.20871 0.95231 0.94306 1.09615 1.18019 0.86904 0.83434 0.76631 1.90728 1.13480 1.87107 1.49880 1.46104 1.11248 1.05570 1.74008 1.20171 0.92887 0.79492 1.02817 1.19629 1.00759 0.99118 0.93896 1.21026 0.96605 0.96278 0.97771 1.21094 0.96653 0.96692 0.97941 1.20542 0.95409 0.96437 0.92905 1.19259 0.86955 0.89690 0.94746 0.92600 1.22422 0.99549 0.99596 1.00423 1.42527 1.07319 1.65402 1.21120 1.19283 0.87446 1.27185 1.03123 0.91014 1.24743 0.98292 1.00969 0.96863 1.69663 1.32486 1.45649 1.10185 0.86120 0.84467 0.78294 0.77324 1.20531 1.21856 1.21843 1.21022 0.97587 0.96899 0.98479 1.20925 0.97804 0.97061 0.96226 0.89954 0.91805 0.88230 0.84078 0.82168 0.82261 0.76101 0.90648 0.90573 0.86288 0.85340 0.93310 0.92365 0.94306 0.78003 0.93495 0.86090 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 8.86 36.00 0.32 -0.70 16 2 C 0.02 0.17 5.95 -103.91 -0.62 -0.45 16 3 C -0.19 -1.37 9.78 -39.50 -0.39 -1.76 16 4 C 0.12 1.00 11.17 -17.47 -0.20 0.81 16 5 N -0.49 -5.21 10.35 -12.91 -0.13 -5.34 16 6 C 0.14 1.42 10.70 -17.13 -0.18 1.24 16 7 C -0.20 -2.00 5.89 -104.82 -0.62 -2.62 16 8 C 0.56 6.36 7.72 -12.33 -0.10 6.26 16 9 O -0.53 -7.17 13.50 5.32 0.07 -7.10 16 10 N -0.72 -7.26 5.50 -62.43 -0.34 -7.60 16 11 C 0.17 1.77 5.80 -5.19 -0.03 1.74 16 12 C -0.13 -1.59 5.25 -104.63 -0.55 -2.14 16 13 C -0.10 -1.32 9.70 -39.58 -0.38 -1.70 16 14 C -0.11 -1.70 9.05 -39.58 -0.36 -2.06 16 15 C -0.05 -0.86 4.95 -104.63 -0.52 -1.38 16 16 C 0.20 3.93 3.09 -69.08 -0.21 3.72 16 17 H 0.06 1.09 7.94 -51.93 -0.41 0.68 16 18 C -0.16 -2.82 9.47 37.16 0.35 -2.47 16 19 N -0.72 -17.51 5.07 -54.55 -0.28 -17.79 16 20 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 24 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 28 C -0.12 -1.71 9.67 -39.58 -0.38 -2.09 16 29 C -0.10 -1.23 9.70 -39.58 -0.38 -1.62 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 32 H 0.10 1.00 5.93 -51.93 -0.31 0.70 16 33 H 0.14 0.64 8.06 -52.48 -0.42 0.21 16 34 H 0.16 0.82 8.06 -52.48 -0.42 0.39 16 35 H 0.16 1.33 6.47 -52.48 -0.34 1.00 16 36 H 0.40 3.65 6.57 -40.82 -0.27 3.38 16 37 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.13 2.25 6.92 -52.49 -0.36 1.89 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.38 9.84 6.07 -40.82 -0.25 9.59 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.12 1.52 8.04 -52.49 -0.42 1.10 16 47 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 393.65 15.07 5.93 5.93 Total: -1.00 -32.23 393.65 -10.09 -42.32 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.55 Total: 11.69 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -4.49 Total: -12.29 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.03 Total: -57.61 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: 0.07 Total: -7.10 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.23 -10.09 -42.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754947565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.786 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds