Wall clock time and date at job start Tue Mar 31 2020 22:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38395 * 120.86016 * 2 1 4 4 C 1.38306 * 119.30936 * 179.97438 * 3 2 1 5 5 N 1.31960 * 121.07786 * 0.02562 * 4 3 2 6 6 C 1.31660 * 121.87957 * 359.97438 * 5 4 3 7 7 C 1.39556 * 120.56831 * 359.74330 * 6 5 4 8 8 C 1.47840 * 120.56284 * 180.27941 * 7 6 5 9 9 O 1.21551 * 119.99936 * 186.13619 * 8 7 6 10 10 N 1.34775 * 119.99903 * 6.13698 * 8 7 6 11 11 C 1.46506 * 119.99860 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46728 * 179.97438 * 11 10 8 13 13 C 1.38231 * 119.99621 * 269.71972 * 12 11 10 14 14 C 1.38243 * 119.99582 * 179.81575 * 13 12 11 15 15 C 1.38227 * 119.99843 * 0.41740 * 14 13 12 16 16 C 1.50702 * 119.99962 * 179.79296 * 15 14 13 17 17 H 1.08999 * 109.47577 * 160.02017 * 16 15 14 18 18 C 1.53003 * 109.47244 * 280.02568 * 16 15 14 19 19 N 1.46502 * 109.47048 * 40.02164 * 16 15 14 20 20 C 1.36943 * 119.99847 * 155.00192 * 19 16 15 21 21 H 1.07994 * 120.00155 * 359.97438 * 20 19 16 22 22 C 1.38813 * 119.99815 * 180.02562 * 20 19 16 23 23 N 1.31620 * 120.00116 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00091 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46964 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47016 * 119.99877 * 24 22 20 27 27 H 1.48497 * 109.46945 * 239.99895 * 24 22 20 28 28 C 1.38234 * 120.00547 * 359.81394 * 15 14 13 29 29 C 1.38230 * 120.00107 * 90.00367 * 12 11 10 30 30 H 1.08999 * 109.46892 * 96.30303 * 1 2 3 31 31 H 1.09000 * 109.46881 * 336.30745 * 1 2 3 32 32 H 1.08995 * 109.47050 * 216.30801 * 1 2 3 33 33 H 1.08003 * 120.34720 * 359.95710 * 3 2 1 34 34 H 1.08004 * 119.46588 * 179.97438 * 4 3 2 35 35 H 1.08008 * 119.71398 * 180.02562 * 6 5 4 36 36 H 0.96999 * 119.99807 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.46506 * 299.99514 * 11 10 8 38 38 H 1.08999 * 109.47319 * 59.99643 * 11 10 8 39 39 H 1.08003 * 120.00210 * 0.02562 * 13 12 11 40 40 H 1.08002 * 119.99532 * 180.21241 * 14 13 12 41 41 H 1.08998 * 109.46864 * 59.99600 * 18 16 15 42 42 H 1.08994 * 109.47324 * 179.97438 * 18 16 15 43 43 H 1.08999 * 109.47108 * 299.99985 * 18 16 15 44 44 H 0.96994 * 120.00218 * 335.00176 * 19 16 15 45 45 H 0.96997 * 120.00305 * 179.97438 * 23 22 20 46 46 H 1.08001 * 120.00594 * 179.97438 * 28 15 14 47 47 H 1.08001 * 119.99964 * 359.96738 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0024 0.0005 6 6 3.6196 -1.1536 0.0005 7 6 2.2249 -1.2017 0.0059 8 6 1.5175 -2.4999 0.0121 9 8 0.3073 -2.5330 -0.0958 10 7 2.2146 -3.6466 0.1374 11 6 1.5136 -4.9330 0.1430 12 6 2.5144 -6.0497 0.2937 13 6 3.0769 -6.6296 -0.8280 14 6 3.9978 -7.6513 -0.6896 15 6 4.3496 -8.0988 0.5700 16 6 5.3500 -9.2157 0.7207 17 1 5.7656 -9.1979 1.7282 18 6 4.6562 -10.5578 0.4789 19 7 6.4282 -9.0406 -0.2555 20 6 7.6654 -9.5749 -0.0124 21 1 7.8464 -10.1250 0.8991 22 6 8.6872 -9.4084 -0.9371 23 7 8.4668 -8.7375 -2.0478 24 14 10.3751 -10.1366 -0.6052 25 1 10.3629 -10.8380 0.7037 26 1 10.7184 -11.1010 -1.6810 27 1 11.3859 -9.0492 -0.5741 28 6 3.7835 -7.5221 1.6915 29 6 2.8655 -6.4979 1.5533 30 1 -0.3633 -0.1128 -1.0215 31 1 -0.3633 0.9411 0.4130 32 1 -0.3633 -0.8281 0.6085 33 1 1.6967 2.1345 -0.0007 34 1 4.1559 2.0762 0.0001 35 1 4.1871 -2.0727 0.0010 36 1 3.1804 -3.6201 0.2231 37 1 0.8105 -4.9600 0.9755 38 1 0.9715 -5.0555 -0.7946 39 1 2.7995 -6.2822 -1.8122 40 1 4.4398 -8.1021 -1.5659 41 1 4.2407 -10.5757 -0.5286 42 1 5.3799 -11.3657 0.5874 43 1 3.8540 -10.6882 1.2051 44 1 6.2658 -8.5462 -1.0741 45 1 9.1809 -8.6209 -2.6938 46 1 4.0581 -7.8720 2.6757 47 1 2.4229 -6.0475 2.4295 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754947565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:18 Heat of formation + Delta-G solvation = 13.236788 kcal Electronic energy + Delta-G solvation = -27625.460581 eV Core-core repulsion = 23772.266800 eV Total energy + Delta-G solvation = -3853.193781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.80417 -40.67024 -39.87481 -37.46632 -35.98700 -34.72002 -34.17511 -32.82820 -31.87885 -31.46112 -30.03894 -28.91606 -27.16781 -25.90102 -25.20480 -23.83553 -23.31957 -22.76418 -21.84241 -21.08966 -19.39912 -19.03019 -17.89190 -17.34035 -17.13940 -16.81404 -16.61661 -16.39444 -16.10820 -15.89606 -15.60289 -15.15231 -15.05327 -14.84142 -14.62540 -14.41948 -14.24552 -13.82794 -13.77966 -13.69374 -13.58069 -13.40743 -13.38310 -13.06061 -12.93022 -12.86682 -12.70475 -12.43143 -12.09061 -12.00731 -11.60390 -11.53395 -11.15031 -11.01368 -10.64668 -10.43160 -10.29160 -10.07339 -9.78604 -9.54543 -9.02118 -7.94074 -5.22269 -0.39510 0.16549 0.30574 0.53760 1.47670 1.47856 1.57802 1.77771 2.11556 2.56148 2.78858 2.92621 3.30699 3.40588 3.63338 3.65991 3.69655 3.81936 3.87764 3.99276 4.00762 4.05559 4.15906 4.36425 4.41536 4.54420 4.55972 4.59923 4.65034 4.72335 4.77311 4.77854 4.80452 4.83044 5.01106 5.07022 5.12387 5.13232 5.22614 5.27423 5.41018 5.42521 5.51270 5.56058 5.61175 5.63449 5.84574 6.10214 6.28449 6.39484 6.84863 7.06762 7.34667 8.09354 8.33331 9.29641 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013206 B = 0.002242 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.794942 B =12486.288588 C =14087.253386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.005 3.995 3 C -0.176 4.176 4 C 0.120 3.880 5 N -0.519 5.519 6 C 0.134 3.866 7 C -0.209 4.209 8 C 0.564 3.436 9 O -0.558 6.558 10 N -0.712 5.712 11 C 0.174 3.826 12 C -0.117 4.117 13 C -0.098 4.098 14 C -0.124 4.124 15 C -0.073 4.073 16 C 0.198 3.802 17 H 0.055 0.945 18 C -0.149 4.149 19 N -0.734 5.734 20 C -0.236 4.236 21 H 0.077 0.923 22 C -0.076 4.076 23 N -0.969 5.969 24 Si 0.970 3.030 25 H -0.265 1.265 26 H -0.295 1.295 27 H -0.295 1.295 28 C -0.122 4.122 29 C -0.092 4.092 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.175 0.825 34 H 0.190 0.810 35 H 0.167 0.833 36 H 0.409 0.591 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.103 0.897 41 H 0.039 0.961 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.374 0.626 45 H 0.250 0.750 46 H 0.138 0.862 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.987 18.442 7.331 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.003 4.003 3 C -0.196 4.196 4 C -0.035 4.035 5 N -0.228 5.228 6 C -0.025 4.025 7 C -0.214 4.214 8 C 0.352 3.648 9 O -0.439 6.439 10 N -0.364 5.364 11 C 0.051 3.949 12 C -0.118 4.118 13 C -0.116 4.116 14 C -0.142 4.142 15 C -0.074 4.074 16 C 0.091 3.909 17 H 0.073 0.927 18 C -0.209 4.209 19 N -0.376 5.376 20 C -0.368 4.368 21 H 0.095 0.905 22 C -0.269 4.269 23 N -0.620 5.620 24 Si 0.800 3.200 25 H -0.189 1.189 26 H -0.223 1.223 27 H -0.222 1.222 28 C -0.140 4.140 29 C -0.110 4.110 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.192 0.808 34 H 0.207 0.793 35 H 0.184 0.816 36 H 0.245 0.755 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.150 0.850 40 H 0.121 0.879 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.208 0.792 45 H 0.059 0.941 46 H 0.156 0.844 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.804 18.300 7.367 26.573 hybrid contribution 0.917 -0.661 -0.682 1.320 sum -16.887 17.639 6.685 25.318 Atomic orbital electron populations 1.21043 0.88571 1.04142 1.03663 1.20790 0.98128 0.91712 0.89680 1.22423 0.95351 0.99352 1.02445 1.23583 0.92530 0.96803 0.90593 1.67760 1.41766 0.99126 1.14173 1.23173 0.90421 0.97218 0.91641 1.20860 0.95395 0.94239 1.10949 1.18189 0.86621 0.83943 0.76076 1.90720 1.14476 1.87483 1.51195 1.46028 1.11506 1.05241 1.73609 1.20125 0.92437 0.79007 1.03311 1.19744 0.99915 0.98691 0.93407 1.21137 0.95882 0.95482 0.99143 1.20968 0.98064 0.98134 0.97082 1.20324 0.96269 0.96772 0.94056 1.19424 0.86606 0.91664 0.93254 0.92707 1.22262 0.99832 0.97922 1.00897 1.42729 1.07837 1.65136 1.21867 1.19665 0.88490 1.25905 1.02741 0.90488 1.25524 1.01893 1.02368 0.97070 1.69818 1.33197 1.47779 1.11249 0.85112 0.80129 0.77264 0.77513 1.18947 1.22258 1.22230 1.21196 0.97558 0.96996 0.98239 1.21226 0.96615 0.95926 0.97270 0.90388 0.89261 0.90212 0.80777 0.79280 0.81646 0.75464 0.89674 0.90577 0.85033 0.87890 0.94134 0.93867 0.91182 0.79218 0.94125 0.84447 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 8.86 71.24 0.63 -1.15 16 2 C 0.01 0.09 5.95 -19.40 -0.12 -0.03 16 3 C -0.18 -2.12 9.78 22.32 0.22 -1.91 16 4 C 0.12 1.67 11.17 84.69 0.95 2.62 16 5 N -0.52 -10.40 10.35 -194.75 -2.01 -12.42 16 6 C 0.13 2.59 10.70 85.04 0.91 3.50 16 7 C -0.21 -4.11 5.89 -19.99 -0.12 -4.23 16 8 C 0.56 12.27 7.72 86.79 0.67 12.94 16 9 O -0.56 -14.66 13.50 -3.87 -0.05 -14.71 16 10 N -0.71 -13.45 5.50 -469.70 -2.58 -16.04 16 11 C 0.17 3.31 5.80 85.63 0.50 3.80 16 12 C -0.12 -2.56 5.25 -19.87 -0.10 -2.67 16 13 C -0.10 -2.57 9.70 22.27 0.22 -2.35 16 14 C -0.12 -4.09 9.05 22.27 0.20 -3.89 16 15 C -0.07 -2.42 4.95 -19.87 -0.10 -2.52 16 16 C 0.20 7.73 3.09 44.25 0.14 7.87 16 17 H 0.05 2.12 7.94 -2.39 -0.02 2.10 16 18 C -0.15 -5.25 9.47 71.98 0.68 -4.57 16 19 N -0.73 -36.64 5.07 -326.49 -1.66 -38.29 16 20 C -0.24 -12.97 9.93 84.03 0.83 -12.14 16 21 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 22 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 23 N -0.97 -59.22 13.06 21.65 0.28 -58.94 16 24 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 27 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 28 C -0.12 -3.19 9.67 22.27 0.22 -2.98 16 29 C -0.09 -1.98 9.70 22.27 0.22 -1.77 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 0.84 8.07 -2.39 -0.02 0.82 16 32 H 0.08 1.56 5.93 -2.39 -0.01 1.54 16 33 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 34 H 0.19 1.35 8.06 -2.91 -0.02 1.32 16 35 H 0.17 2.72 6.47 -2.91 -0.02 2.70 16 36 H 0.41 6.90 6.57 -92.71 -0.61 6.29 16 37 H 0.09 1.52 8.09 -2.39 -0.02 1.50 16 38 H 0.08 1.50 8.08 -2.39 -0.02 1.48 16 39 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.10 3.87 6.92 -2.91 -0.02 3.85 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.37 20.03 6.07 -92.71 -0.56 19.46 16 45 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 46 H 0.14 3.11 8.04 -2.91 -0.02 3.08 16 47 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -71.02 393.65 2.24 -68.78 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: -0.17 Total: 36.89 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 6.41 Total: -13.38 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -5.97 Total: -125.68 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.05 Total: -14.71 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -71.02 2.24 -68.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754947565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.020 kcal (2) G-P(sol) polarization free energy of solvation -71.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds