Wall clock time and date at job start Tue Mar 31 2020 23:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39868 * 126.03767 * 2 1 4 4 N 1.30844 * 108.19764 * 179.97438 * 3 2 1 5 5 N 1.40078 * 108.20890 * 0.02562 * 4 3 2 6 6 C 1.46495 * 126.04021 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47220 * 305.02722 * 6 5 4 8 8 O 1.21282 * 119.99922 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00064 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00040 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47131 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47434 * 295.00282 * 11 10 9 13 13 C 1.52994 * 109.46821 * 174.99832 * 11 10 9 14 14 O 1.42904 * 109.47774 * 305.00274 * 13 11 10 15 15 N 1.46903 * 109.46900 * 55.00438 * 11 10 9 16 16 C 1.46900 * 110.99559 * 204.99793 * 15 11 10 17 17 C 1.50707 * 109.46682 * 179.97438 * 16 15 11 18 18 O 1.21287 * 120.00378 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99400 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99607 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99982 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00230 * 179.97438 * 20 19 17 23 23 N 1.31416 * 120.00300 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99851 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.46953 * 89.99470 * 24 22 20 26 26 H 1.48495 * 109.47549 * 209.99536 * 24 22 20 27 27 H 1.48501 * 109.47043 * 329.99919 * 24 22 20 28 28 C 1.34957 * 107.92650 * 0.02562 * 5 4 3 29 29 H 1.09000 * 109.47551 * 90.02427 * 1 2 3 30 30 H 1.09002 * 109.46861 * 210.02340 * 1 2 3 31 31 H 1.09005 * 109.47196 * 330.02268 * 1 2 3 32 32 H 1.07995 * 125.89923 * 0.21784 * 3 2 1 33 33 H 1.09000 * 109.47058 * 65.02749 * 6 5 4 34 34 H 1.09005 * 109.47365 * 185.02206 * 6 5 4 35 35 H 0.96999 * 120.00378 * 0.02562 * 9 7 6 36 36 H 1.09002 * 109.47120 * 299.99901 * 10 9 7 37 37 H 1.08995 * 109.47093 * 59.99883 * 10 9 7 38 38 H 1.09008 * 109.47269 * 65.00325 * 13 11 10 39 39 H 1.08999 * 109.47363 * 185.00135 * 13 11 10 40 40 H 0.96700 * 114.00468 * 179.97438 * 14 13 11 41 41 H 1.00900 * 110.99769 * 328.94941 * 15 11 10 42 42 H 1.09003 * 109.47012 * 299.99677 * 16 15 11 43 43 H 1.08998 * 109.47416 * 59.99898 * 16 15 11 44 44 H 0.96998 * 120.00781 * 359.97438 * 19 17 16 45 45 H 0.97001 * 119.99436 * 180.02562 * 23 22 20 46 46 H 1.07995 * 126.12756 * 180.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7745 -1.5248 0.0003 7 6 5.6582 -1.1551 -1.1631 8 8 5.3263 -0.2659 -1.9181 9 7 6.8173 -1.8126 -1.3645 10 6 7.6761 -1.4535 -2.4958 11 6 8.9198 -2.3448 -2.4951 12 1 9.5141 -2.1386 -1.6050 13 6 9.7548 -2.0561 -3.7441 14 8 8.9411 -2.2142 -4.9082 15 7 8.5109 -3.7558 -2.4948 16 6 9.5581 -4.6071 -1.9146 17 6 9.1036 -6.0439 -1.9307 18 8 8.0144 -6.3304 -2.3808 19 7 9.9076 -7.0104 -1.4450 20 6 9.4944 -8.3175 -1.4601 21 1 8.5248 -8.5727 -1.8617 22 6 10.3233 -9.3141 -0.9599 23 7 9.9270 -10.5670 -0.9739 24 14 12.0006 -8.8728 -0.2660 25 1 11.8768 -8.5914 1.1868 26 1 12.9360 -10.0075 -0.4725 27 1 12.5224 -7.6685 -0.9608 28 6 2.3031 -1.0942 -0.0009 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5135 32 1 1.9950 2.1577 0.0033 33 1 5.3226 -1.3844 0.9319 34 1 4.4727 -2.5684 -0.0899 35 1 7.0826 -2.5240 -0.7609 36 1 7.1280 -1.5948 -3.4273 37 1 7.9775 -0.4099 -2.4063 38 1 10.1322 -1.0344 -3.7007 39 1 10.5930 -2.7514 -3.7896 40 1 9.4063 -2.0459 -5.7391 41 1 7.6350 -3.8783 -2.0092 42 1 10.4724 -4.5082 -2.4998 43 1 9.7494 -4.2984 -0.8868 44 1 10.7788 -6.7814 -1.0854 45 1 10.5057 -11.2626 -0.6243 46 1 1.9724 -2.1223 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755624751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:13 Heat of formation + Delta-G solvation = -22.922394 kcal Electronic energy + Delta-G solvation = -28711.293649 eV Core-core repulsion = 24445.682625 eV Total energy + Delta-G solvation = -4265.611024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43717 -39.91331 -38.72096 -37.69051 -35.69011 -34.25655 -33.93246 -33.72350 -31.79538 -31.72818 -30.50843 -28.79831 -26.57450 -26.33966 -25.16587 -23.81678 -21.83793 -20.79109 -20.64767 -20.28442 -19.49633 -18.53389 -17.66615 -17.59470 -17.27963 -16.50049 -15.88675 -15.64686 -15.59155 -15.21403 -14.90155 -14.69058 -14.39270 -14.16806 -13.92414 -13.82484 -13.63423 -13.49196 -13.24567 -13.13240 -12.98141 -12.73311 -12.56906 -12.37004 -12.18466 -12.08509 -11.81094 -11.77014 -11.24527 -11.15894 -10.68947 -10.66244 -10.30252 -10.04452 -10.01953 -9.64464 -9.51167 -9.31877 -8.67357 -8.49850 -8.30073 -8.23743 -6.37454 -3.89293 1.67526 2.15252 2.33248 2.67328 2.88656 2.96163 2.99981 3.09469 3.64579 3.85109 4.03736 4.18237 4.20786 4.38545 4.55869 4.61115 4.66323 4.69359 4.84136 4.95729 5.09127 5.12523 5.16980 5.24170 5.25442 5.42308 5.48693 5.51127 5.51686 5.61459 5.67807 5.80706 5.81544 5.92651 5.96513 6.10358 6.48762 6.74434 6.92681 7.12665 7.38039 7.50994 7.55368 7.65128 7.91339 8.07276 8.52464 8.88162 9.35135 9.74622 10.75511 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.002225 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.127775 B =12578.932131 C =14172.649910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.241 4.241 3 C 0.043 3.957 4 N -0.267 5.267 5 N -0.362 5.362 6 C 0.115 3.885 7 C 0.503 3.497 8 O -0.508 6.508 9 N -0.731 5.731 10 C 0.125 3.875 11 C 0.076 3.924 12 H 0.061 0.939 13 C 0.091 3.909 14 O -0.553 6.553 15 N -0.653 5.653 16 C 0.045 3.955 17 C 0.448 3.552 18 O -0.562 6.562 19 N -0.589 5.589 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.270 1.270 28 C 0.054 3.946 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.181 0.819 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.399 0.601 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.374 0.626 41 H 0.349 0.651 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.370 0.630 45 H 0.274 0.726 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.989 21.645 3.787 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.252 4.252 3 C -0.144 4.144 4 N -0.087 5.087 5 N -0.145 5.145 6 C -0.011 4.011 7 C 0.286 3.714 8 O -0.381 6.381 9 N -0.385 5.385 10 C 0.001 3.999 11 C -0.034 4.034 12 H 0.079 0.921 13 C 0.012 3.988 14 O -0.358 6.358 15 N -0.288 5.288 16 C -0.088 4.088 17 C 0.234 3.766 18 O -0.444 6.444 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.519 5.519 24 Si 0.707 3.293 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.091 4.091 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.198 0.802 33 H 0.133 0.867 34 H 0.147 0.853 35 H 0.233 0.767 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.220 0.780 41 H 0.171 0.829 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.843 21.876 2.782 22.813 hybrid contribution 1.326 -0.310 1.384 1.941 sum -4.518 21.566 4.166 22.425 Atomic orbital electron populations 1.20041 0.89285 1.02019 1.01562 1.20128 0.97075 0.91884 1.16160 1.23820 0.90055 0.99779 1.00766 1.77451 1.20970 0.88196 1.22110 1.47907 1.04359 1.04798 1.57423 1.21488 0.85553 0.94741 0.99304 1.20451 0.81777 0.82649 0.86514 1.90799 1.71938 1.29460 1.45926 1.45961 1.21943 1.39185 1.31432 1.21477 0.90503 0.97946 0.89948 1.21893 0.95614 0.89148 0.96781 0.92090 1.22064 0.92626 0.98467 0.85678 1.86609 1.39979 1.93543 1.15626 1.59996 1.05381 1.03031 1.60436 1.21834 0.96002 0.93332 0.97632 1.19642 0.86772 0.86005 0.84193 1.90582 1.22125 1.82666 1.48993 1.42207 1.16869 1.07616 1.56188 1.19426 1.05164 0.79883 1.38975 0.86259 1.25052 0.98353 0.95042 0.97737 1.69623 1.37437 0.99518 1.45357 0.86667 0.84146 0.78674 0.79843 1.19656 1.20131 1.19534 1.22350 0.83707 1.00231 1.02809 0.92130 0.92180 0.91961 0.80230 0.86748 0.85305 0.76651 0.89012 0.90924 0.93605 0.93060 0.77992 0.82891 0.89420 0.93730 0.79727 0.91557 0.80896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.37 36.01 0.37 -0.12 16 2 C -0.24 -2.40 6.10 -105.05 -0.64 -3.04 16 3 C 0.04 0.48 11.96 -17.36 -0.21 0.28 16 4 N -0.27 -3.66 11.64 30.62 0.36 -3.30 16 5 N -0.36 -4.18 3.40 -62.55 -0.21 -4.39 16 6 C 0.11 1.00 6.99 -5.20 -0.04 0.97 16 7 C 0.50 5.98 7.86 -10.99 -0.09 5.90 16 8 O -0.51 -8.42 15.71 5.56 0.09 -8.33 16 9 N -0.73 -7.34 4.99 -60.29 -0.30 -7.64 16 10 C 0.12 1.40 5.20 -4.04 -0.02 1.38 16 11 C 0.08 0.81 2.60 -67.71 -0.18 0.63 16 12 H 0.06 0.52 7.80 -51.93 -0.40 0.12 16 13 C 0.09 0.90 6.80 37.15 0.25 1.15 16 14 O -0.55 -6.50 12.64 -35.23 -0.45 -6.95 16 15 N -0.65 -9.28 5.87 -107.99 -0.63 -9.92 16 16 C 0.04 0.67 5.96 -4.97 -0.03 0.64 16 17 C 0.45 9.62 7.82 -10.98 -0.09 9.53 16 18 O -0.56 -14.54 15.78 5.55 0.09 -14.45 16 19 N -0.59 -13.38 5.09 -10.96 -0.06 -13.43 16 20 C -0.31 -8.39 10.16 -14.93 -0.15 -8.54 16 21 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 22 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.14 13.96 55.50 0.77 -24.36 16 24 Si 0.88 18.69 27.74 -169.99 -4.71 13.98 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 27 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 28 C 0.05 0.53 11.36 -17.22 -0.20 0.33 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.13 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.40 3.17 7.37 -40.82 -0.30 2.87 16 36 H 0.09 1.30 7.40 -51.93 -0.38 0.92 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 39 H 0.05 0.50 7.35 -51.93 -0.38 0.12 16 40 H 0.37 2.74 9.12 45.56 0.42 3.15 16 41 H 0.35 5.06 6.41 -39.29 -0.25 4.81 16 42 H 0.09 1.19 7.36 -51.93 -0.38 0.80 16 43 H 0.04 0.54 8.05 -51.93 -0.42 0.12 16 44 H 0.37 7.31 5.76 -40.82 -0.24 7.07 16 45 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 391.58 15.07 5.90 5.90 Total: -1.00 -39.62 391.58 -5.96 -45.57 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -5.70 Total: 17.22 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -1.10 Total: 10.11 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -0.07 Total: -63.05 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.27 Total: -29.73 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.71 Total: 13.98 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -39.62 -5.96 -45.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755624751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.652 kcal (2) G-P(sol) polarization free energy of solvation -39.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds