Wall clock time and date at job start Tue Mar 31 2020 23:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39868 * 126.03767 * 2 1 4 4 N 1.30844 * 108.19764 * 179.97438 * 3 2 1 5 5 N 1.40078 * 108.20890 * 0.02562 * 4 3 2 6 6 C 1.46495 * 126.04021 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47220 * 305.02722 * 6 5 4 8 8 O 1.21282 * 119.99922 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00064 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00040 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47131 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47434 * 295.00282 * 11 10 9 13 13 C 1.52994 * 109.46821 * 174.99832 * 11 10 9 14 14 O 1.42904 * 109.47774 * 305.00274 * 13 11 10 15 15 N 1.46903 * 109.46900 * 55.00438 * 11 10 9 16 16 C 1.46900 * 110.99559 * 204.99793 * 15 11 10 17 17 C 1.50707 * 109.46682 * 179.97438 * 16 15 11 18 18 O 1.21287 * 120.00378 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99400 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99607 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99982 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00230 * 179.97438 * 20 19 17 23 23 N 1.31416 * 120.00300 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99851 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.46953 * 89.99470 * 24 22 20 26 26 H 1.48495 * 109.47549 * 209.99536 * 24 22 20 27 27 H 1.48501 * 109.47043 * 329.99919 * 24 22 20 28 28 C 1.34957 * 107.92650 * 0.02562 * 5 4 3 29 29 H 1.09000 * 109.47551 * 90.02427 * 1 2 3 30 30 H 1.09002 * 109.46861 * 210.02340 * 1 2 3 31 31 H 1.09005 * 109.47196 * 330.02268 * 1 2 3 32 32 H 1.07995 * 125.89923 * 0.21784 * 3 2 1 33 33 H 1.09000 * 109.47058 * 65.02749 * 6 5 4 34 34 H 1.09005 * 109.47365 * 185.02206 * 6 5 4 35 35 H 0.96999 * 120.00378 * 0.02562 * 9 7 6 36 36 H 1.09002 * 109.47120 * 299.99901 * 10 9 7 37 37 H 1.08995 * 109.47093 * 59.99883 * 10 9 7 38 38 H 1.09008 * 109.47269 * 65.00325 * 13 11 10 39 39 H 1.08999 * 109.47363 * 185.00135 * 13 11 10 40 40 H 0.96700 * 114.00468 * 179.97438 * 14 13 11 41 41 H 1.00900 * 110.99769 * 328.94941 * 15 11 10 42 42 H 1.09003 * 109.47012 * 299.99677 * 16 15 11 43 43 H 1.08998 * 109.47416 * 59.99898 * 16 15 11 44 44 H 0.96998 * 120.00781 * 359.97438 * 19 17 16 45 45 H 0.97001 * 119.99436 * 180.02562 * 23 22 20 46 46 H 1.07995 * 126.12756 * 180.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7745 -1.5248 0.0003 7 6 5.6582 -1.1551 -1.1631 8 8 5.3263 -0.2659 -1.9181 9 7 6.8173 -1.8126 -1.3645 10 6 7.6761 -1.4535 -2.4958 11 6 8.9198 -2.3448 -2.4951 12 1 9.5141 -2.1386 -1.6050 13 6 9.7548 -2.0561 -3.7441 14 8 8.9411 -2.2142 -4.9082 15 7 8.5109 -3.7558 -2.4948 16 6 9.5581 -4.6071 -1.9146 17 6 9.1036 -6.0439 -1.9307 18 8 8.0144 -6.3304 -2.3808 19 7 9.9076 -7.0104 -1.4450 20 6 9.4944 -8.3175 -1.4601 21 1 8.5248 -8.5727 -1.8617 22 6 10.3233 -9.3141 -0.9599 23 7 9.9270 -10.5670 -0.9739 24 14 12.0006 -8.8728 -0.2660 25 1 11.8768 -8.5914 1.1868 26 1 12.9360 -10.0075 -0.4725 27 1 12.5224 -7.6685 -0.9608 28 6 2.3031 -1.0942 -0.0009 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5135 32 1 1.9950 2.1577 0.0033 33 1 5.3226 -1.3844 0.9319 34 1 4.4727 -2.5684 -0.0899 35 1 7.0826 -2.5240 -0.7609 36 1 7.1280 -1.5948 -3.4273 37 1 7.9775 -0.4099 -2.4063 38 1 10.1322 -1.0344 -3.7007 39 1 10.5930 -2.7514 -3.7896 40 1 9.4063 -2.0459 -5.7391 41 1 7.6350 -3.8783 -2.0092 42 1 10.4724 -4.5082 -2.4998 43 1 9.7494 -4.2984 -0.8868 44 1 10.7788 -6.7814 -1.0854 45 1 10.5057 -11.2626 -0.6243 46 1 1.9724 -2.1223 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755624751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:12 Heat of formation + Delta-G solvation = -59.664451 kcal Electronic energy + Delta-G solvation = -28712.886904 eV Core-core repulsion = 24445.682625 eV Total energy + Delta-G solvation = -4267.204279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.20707 -40.86614 -40.26007 -38.77292 -36.61819 -35.99578 -34.97981 -34.63862 -33.72680 -32.50598 -31.51513 -29.55984 -28.04836 -27.09200 -26.00341 -25.39014 -22.67036 -21.67353 -21.42753 -21.29586 -21.06084 -20.30508 -18.65049 -18.42542 -18.09912 -17.66949 -17.06610 -16.82334 -16.63361 -16.54431 -16.05811 -15.72729 -15.54490 -15.16184 -15.00262 -14.77370 -14.68881 -14.50611 -14.35738 -14.15028 -14.05953 -13.91144 -13.65248 -13.44002 -13.17695 -12.97377 -12.93959 -12.70105 -12.67925 -12.40139 -12.01636 -11.97040 -11.49684 -11.48479 -11.23291 -10.78020 -10.42315 -10.35473 -10.23811 -10.22597 -9.32865 -9.23670 -8.39886 -6.00902 0.90804 1.31370 1.36756 1.44356 1.46028 1.46097 1.90685 1.97366 2.08056 2.24317 2.66467 3.16840 3.31497 3.43841 3.49912 3.70233 3.79583 3.99084 4.07337 4.10392 4.17970 4.21556 4.35586 4.42554 4.49518 4.51186 4.57942 4.61847 4.69059 4.76958 4.92052 4.98361 5.00899 5.24808 5.26171 5.32579 5.53783 5.74937 5.90396 6.03011 6.05938 6.31001 6.34304 6.61009 6.76445 6.89982 7.04557 7.07074 7.41534 7.98527 8.77678 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.002225 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.127775 B =12578.932131 C =14172.649910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.254 4.254 3 C 0.031 3.969 4 N -0.316 5.316 5 N -0.373 5.373 6 C 0.112 3.888 7 C 0.499 3.501 8 O -0.562 6.562 9 N -0.718 5.718 10 C 0.132 3.868 11 C 0.082 3.918 12 H 0.096 0.904 13 C 0.085 3.915 14 O -0.584 6.584 15 N -0.678 5.678 16 C 0.060 3.940 17 C 0.448 3.552 18 O -0.614 6.614 19 N -0.590 5.590 20 C -0.327 4.327 21 H 0.054 0.946 22 C -0.018 4.018 23 N -0.936 5.936 24 Si 0.966 3.034 25 H -0.255 1.255 26 H -0.279 1.279 27 H -0.229 1.229 28 C 0.047 3.953 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.199 0.801 33 H 0.141 0.859 34 H 0.161 0.839 35 H 0.412 0.588 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.390 0.610 41 H 0.344 0.656 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.390 0.610 45 H 0.278 0.722 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.557 23.280 5.537 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.265 4.265 3 C -0.155 4.155 4 N -0.137 5.137 5 N -0.155 5.155 6 C -0.012 4.012 7 C 0.285 3.715 8 O -0.440 6.440 9 N -0.372 5.372 10 C 0.008 3.992 11 C -0.028 4.028 12 H 0.114 0.886 13 C 0.006 3.994 14 O -0.391 6.391 15 N -0.313 5.313 16 C -0.072 4.072 17 C 0.236 3.764 18 O -0.498 6.498 19 N -0.232 5.232 20 C -0.456 4.456 21 H 0.072 0.928 22 C -0.216 4.216 23 N -0.576 5.576 24 Si 0.786 3.214 25 H -0.179 1.179 26 H -0.205 1.205 27 H -0.153 1.153 28 C -0.097 4.097 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.215 0.785 33 H 0.158 0.842 34 H 0.178 0.822 35 H 0.249 0.751 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.238 0.762 41 H 0.165 0.835 42 H 0.130 0.870 43 H 0.107 0.893 44 H 0.226 0.774 45 H 0.088 0.912 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.380 23.529 4.538 24.200 hybrid contribution 0.429 -0.827 0.744 1.192 sum -2.951 22.702 5.282 23.495 Atomic orbital electron populations 1.20077 0.87366 1.03171 1.01910 1.20555 0.98527 0.91516 1.15892 1.24287 0.89889 1.01216 1.00114 1.77361 1.22398 0.89843 1.24061 1.48136 1.05511 1.04389 1.57512 1.21794 0.84833 0.95817 0.98794 1.21051 0.82091 0.81749 0.86647 1.90775 1.73198 1.31937 1.48050 1.45869 1.21346 1.38963 1.31069 1.21310 0.90584 0.98520 0.88820 1.22015 0.95495 0.86556 0.98715 0.88606 1.22255 0.92217 1.00260 0.84671 1.86572 1.41601 1.93832 1.17140 1.59967 1.05207 1.05099 1.61047 1.21763 0.96472 0.88151 1.00861 1.20987 0.85540 0.88509 0.81345 1.90565 1.24582 1.84177 1.50507 1.42018 1.18045 1.05997 1.57118 1.18984 1.03499 0.82852 1.40263 0.92779 1.26145 1.03755 0.94263 0.97433 1.69815 1.39832 1.01251 1.46725 0.85354 0.76598 0.79742 0.79734 1.17948 1.20462 1.15266 1.22962 0.83241 1.01716 1.01801 0.92087 0.90917 0.90966 0.78473 0.84155 0.82195 0.75127 0.92547 0.90436 0.90839 0.92516 0.76181 0.83493 0.86976 0.89268 0.77428 0.91224 0.77915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.37 71.24 0.74 -0.11 16 2 C -0.25 -4.86 6.10 -20.14 -0.12 -4.99 16 3 C 0.03 0.71 11.96 85.23 1.02 1.73 16 4 N -0.32 -8.75 11.64 -57.02 -0.66 -9.42 16 5 N -0.37 -8.36 3.40 -351.80 -1.20 -9.56 16 6 C 0.11 1.80 6.99 85.63 0.60 2.40 16 7 C 0.50 11.64 7.86 87.66 0.69 12.33 16 8 O -0.56 -19.12 15.71 -3.04 -0.05 -19.17 16 9 N -0.72 -13.41 4.99 -463.05 -2.31 -15.72 16 10 C 0.13 2.79 5.20 86.38 0.45 3.23 16 11 C 0.08 1.47 2.60 44.91 0.12 1.59 16 12 H 0.10 1.12 7.80 -2.39 -0.02 1.10 16 13 C 0.08 1.42 6.80 71.98 0.49 1.91 16 14 O -0.58 -13.05 12.64 -148.98 -1.88 -14.93 16 15 N -0.68 -17.63 5.87 -495.57 -2.91 -20.54 16 16 C 0.06 1.54 5.96 85.56 0.51 2.05 16 17 C 0.45 18.72 7.82 87.66 0.69 19.41 16 18 O -0.61 -32.53 15.78 -3.05 -0.05 -32.57 16 19 N -0.59 -26.02 5.09 -306.98 -1.56 -27.59 16 20 C -0.33 -18.45 10.16 84.04 0.85 -17.60 16 21 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 22 C -0.02 -0.94 5.50 84.93 0.47 -0.48 16 23 N -0.94 -55.24 13.96 21.66 0.30 -54.94 16 24 Si 0.97 36.95 27.74 68.60 1.90 38.85 16 25 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 26 H -0.28 -10.81 7.11 99.48 0.71 -10.11 16 27 H -0.23 -7.22 6.52 99.48 0.65 -6.57 16 28 C 0.05 0.88 11.36 83.54 0.95 1.83 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.20 3.26 8.06 -2.91 -0.02 3.23 16 33 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.16 1.47 8.07 -2.38 -0.02 1.45 16 35 H 0.41 5.56 7.37 -92.71 -0.68 4.87 16 36 H 0.06 1.62 7.40 -2.39 -0.02 1.61 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.06 0.89 7.35 -2.39 -0.02 0.87 16 40 H 0.39 5.28 9.12 -74.06 -0.68 4.61 16 41 H 0.34 9.42 6.41 -89.69 -0.57 8.84 16 42 H 0.11 2.45 7.36 -2.39 -0.02 2.43 16 43 H 0.09 1.60 8.05 -2.39 -0.02 1.58 16 44 H 0.39 13.93 5.76 -92.71 -0.53 13.39 16 45 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 46 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -94.81 391.58 -2.44 -97.26 By element: Atomic # 1 Polarization: 46.51 SS G_CDS: -1.47 Total: 45.04 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 7.44 Total: 23.29 kcal Atomic # 7 Polarization: -129.42 SS G_CDS: -8.34 Total: -137.76 kcal Atomic # 8 Polarization: -64.70 SS G_CDS: -1.98 Total: -66.68 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 1.90 Total: 38.85 kcal Total: -94.81 -2.44 -97.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755624751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.593 kcal (2) G-P(sol) polarization free energy of solvation -94.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds