Wall clock time and date at job start Tue Mar 31 2020 22:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 H 1.08998 * 109.47192 * 54.99687 * 4 3 2 6 6 N 1.46905 * 109.47325 * 294.99733 * 4 3 2 7 7 C 1.46898 * 110.99935 * 84.99713 * 6 4 3 8 8 C 1.50699 * 109.47289 * 180.02562 * 7 6 4 9 9 O 1.21281 * 119.99851 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00026 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00080 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47580 * 89.99520 * 11 10 8 13 13 H 1.08005 * 119.99649 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00196 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00053 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00054 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46952 * 60.00362 * 16 14 12 18 18 H 1.48504 * 109.47103 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47399 * 300.00049 * 16 14 12 20 20 C 1.46501 * 120.00181 * 359.97438 * 10 8 7 21 21 C 1.53001 * 109.46749 * 90.00287 * 20 10 8 22 22 C 1.47205 * 109.46705 * 179.97438 * 21 20 10 23 23 N 6.48511 * 53.99710 * 24.92808 * 2 1 3 24 24 C 1.50695 * 109.47139 * 175.00136 * 4 3 2 25 25 C 1.38226 * 120.00445 * 79.72433 * 24 4 3 26 26 C 1.38240 * 120.00304 * 179.81360 * 25 24 4 27 27 C 1.38232 * 119.99787 * 0.39308 * 26 25 24 28 28 C 1.38236 * 120.00187 * 359.86088 * 27 26 25 29 29 C 1.38231 * 119.99780 * 359.95273 * 28 27 26 30 30 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 31 31 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 32 32 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 33 33 H 1.00896 * 111.00177 * 208.95602 * 6 4 3 34 34 H 1.09003 * 109.47720 * 300.00913 * 7 6 4 35 35 H 1.09009 * 109.46992 * 60.00204 * 7 6 4 36 36 H 1.09005 * 109.47086 * 209.99866 * 11 10 8 37 37 H 1.09003 * 109.47074 * 329.99438 * 11 10 8 38 38 H 0.96996 * 120.00114 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.47058 * 210.00206 * 20 10 8 40 40 H 1.08994 * 109.47042 * 330.00413 * 20 10 8 41 41 H 1.08998 * 109.47275 * 299.99786 * 21 20 10 42 42 H 1.08994 * 109.47246 * 60.00251 * 21 20 10 43 43 H 1.08002 * 120.00335 * 0.02562 * 25 24 4 44 44 H 1.08001 * 120.00437 * 180.23258 * 26 25 24 45 45 H 1.07998 * 120.00125 * 179.83663 * 27 26 25 46 46 H 1.07997 * 119.99927 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.00152 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 1 2.7221 -1.7992 -1.1813 6 7 2.7685 -2.2886 0.8612 7 6 1.4086 -2.8116 0.6738 8 6 1.0460 -3.6972 1.8380 9 8 1.8420 -3.8748 2.7357 10 7 -0.1626 -4.2919 1.8815 11 6 -0.5153 -5.1523 3.0135 12 6 -1.1643 -4.3233 4.0917 13 1 -1.3001 -3.2615 3.9482 14 6 -1.5838 -4.9201 5.2617 15 7 -1.4170 -6.2128 5.4370 16 14 -2.3876 -3.8923 6.5984 17 1 -3.6161 -3.2542 6.0608 18 1 -2.7441 -4.7644 7.7463 19 1 -1.4414 -2.8412 7.0511 20 6 -1.1243 -4.0769 0.7974 21 6 -0.9231 -5.1429 -0.2815 22 6 -1.8897 -4.9273 -1.3705 23 7 -2.6382 -4.7576 -2.2112 24 6 4.6585 -1.3975 -0.3791 25 6 5.4438 -1.3521 0.7575 26 6 6.8216 -1.3368 0.6455 27 6 7.4138 -1.3587 -0.6034 28 6 6.6284 -1.3988 -1.7402 29 6 5.2507 -1.4180 -1.6281 30 1 -1.0498 -0.0004 0.0001 31 1 3.0090 0.6649 -0.7843 32 1 3.0092 0.3479 0.9672 33 1 3.4313 -3.0397 0.9820 34 1 0.7046 -1.9814 0.6162 35 1 1.3655 -3.3891 -0.2498 36 1 -1.2097 -5.9239 2.6809 37 1 0.3862 -5.6207 3.4085 38 1 -1.7125 -6.6327 6.2599 39 1 -2.1380 -4.1460 1.1919 40 1 -0.9693 -3.0885 0.3649 41 1 0.0907 -5.0738 -0.6760 42 1 -1.0780 -6.1313 0.1509 43 1 4.9812 -1.3321 1.7332 44 1 7.4353 -1.3051 1.5336 45 1 8.4901 -1.3440 -0.6910 46 1 7.0911 -1.4155 -2.7159 47 1 4.6370 -1.4498 -2.5162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271703515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:58 Heat of formation + Delta-G solvation = 58.735001 kcal Electronic energy + Delta-G solvation = -28527.500642 eV Core-core repulsion = 24676.279812 eV Total energy + Delta-G solvation = -3851.220831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.96098 -40.26673 -38.03097 -37.68865 -36.62002 -34.86827 -34.07878 -32.85074 -32.13425 -31.70118 -30.04019 -29.35277 -27.16123 -25.31941 -24.76837 -23.94513 -23.17674 -21.50315 -20.04076 -19.01341 -18.78614 -18.36098 -18.08271 -17.63641 -17.10473 -16.93927 -16.47609 -15.97336 -15.91706 -15.64746 -15.37973 -15.16129 -14.98198 -14.76958 -14.39302 -14.23683 -14.14190 -13.89853 -13.66256 -13.55061 -13.51065 -13.49569 -13.27775 -13.15288 -12.93359 -12.75384 -12.71088 -12.50453 -12.15686 -11.89805 -11.85939 -11.80689 -11.67746 -11.16275 -10.91063 -10.57237 -10.41657 -9.73992 -9.61449 -9.49134 -9.31915 -8.16779 -6.28747 0.45722 0.58224 1.40003 1.43407 1.49823 1.66702 1.81361 1.90524 1.92607 2.00425 2.25650 2.44668 2.92273 3.05330 3.14842 3.27852 3.47089 3.78617 3.94114 4.03223 4.06901 4.10144 4.24236 4.27513 4.33280 4.38797 4.46390 4.51427 4.60563 4.69137 4.75406 4.81880 4.82381 5.03365 5.04526 5.11286 5.14174 5.24857 5.27100 5.34876 5.61562 5.62583 5.66593 5.71246 5.88722 6.04127 6.14992 6.18686 6.35417 6.58869 6.75579 6.77356 6.83592 7.36217 7.55877 8.89651 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009531 B = 0.003142 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.226057 B = 8909.324823 C =10260.843276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.193 4.193 3 C 0.000 4.000 4 C 0.143 3.857 5 H 0.071 0.929 6 N -0.678 5.678 7 C 0.038 3.962 8 C 0.502 3.498 9 O -0.576 6.576 10 N -0.598 5.598 11 C 0.262 3.738 12 C -0.540 4.540 13 H 0.051 0.949 14 C 0.012 3.988 15 N -0.926 5.926 16 Si 0.956 3.044 17 H -0.263 1.263 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.114 3.886 21 C -0.038 4.038 22 C 0.244 3.756 23 N -0.485 5.485 24 C -0.099 4.099 25 C -0.111 4.111 26 C -0.133 4.133 27 C -0.124 4.124 28 C -0.126 4.126 29 C -0.114 4.114 30 H 0.234 0.766 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.348 0.652 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.035 0.965 37 H 0.003 0.997 38 H 0.265 0.735 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.133 0.867 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.130 0.870 45 H 0.139 0.861 46 H 0.144 0.856 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.654 10.428 -17.793 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.193 4.193 3 C -0.037 4.037 4 C 0.034 3.966 5 H 0.088 0.912 6 N -0.311 5.311 7 C -0.094 4.094 8 C 0.290 3.710 9 O -0.455 6.455 10 N -0.330 5.330 11 C 0.141 3.859 12 C -0.578 4.578 13 H 0.070 0.930 14 C -0.187 4.187 15 N -0.566 5.566 16 Si 0.781 3.219 17 H -0.187 1.187 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.011 4.011 21 C -0.079 4.079 22 C -0.073 4.073 23 N -0.163 5.163 24 C -0.099 4.099 25 C -0.129 4.129 26 C -0.151 4.151 27 C -0.142 4.142 28 C -0.144 4.144 29 C -0.132 4.132 30 H 0.251 0.749 31 H 0.127 0.873 32 H 0.103 0.897 33 H 0.169 0.831 34 H 0.136 0.864 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.021 0.979 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.151 0.849 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.148 0.852 45 H 0.157 0.843 46 H 0.161 0.839 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.710 10.942 -18.043 24.133 hybrid contribution -0.333 -0.593 1.100 1.294 sum 11.377 10.349 -16.942 22.882 Atomic orbital electron populations 1.25484 0.96780 1.00341 1.01007 1.23355 0.95101 1.00249 1.00592 1.18878 0.84310 0.96642 1.03888 1.20335 0.90849 0.92869 0.92566 0.91154 1.60156 1.02405 1.25186 1.43357 1.22293 0.93548 0.98809 0.94737 1.21129 0.81414 0.80291 0.88130 1.90661 1.50956 1.62904 1.40947 1.48061 1.14478 1.48219 1.22222 1.18777 0.94522 0.89271 0.83365 1.21720 1.38888 0.94997 1.02231 0.93049 1.25700 0.96651 0.96023 1.00325 1.70011 1.48153 1.10918 1.27472 0.85648 0.79021 0.78527 0.78701 1.18730 1.20671 1.20662 1.21490 0.94428 0.98761 0.86406 1.19823 0.96196 1.03104 0.88756 1.29200 0.93041 0.91743 0.93301 1.81348 1.11705 1.10354 1.12942 1.19800 0.93967 1.02241 0.93934 1.21172 0.94086 0.98936 0.98755 1.21408 0.94746 1.00342 0.98629 1.21481 1.01018 0.99260 0.92404 1.21424 0.93605 0.99851 0.99546 1.21271 0.95562 0.99614 0.96771 0.74933 0.87340 0.89712 0.83139 0.86376 0.89755 0.94723 0.97862 0.92581 0.89630 0.88195 0.84934 0.86014 0.86430 0.85222 0.84287 0.83851 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.50 17.65 74.32 1.31 -3.19 16 2 C -0.19 -4.20 11.24 31.13 0.35 -3.85 16 3 C 0.00 0.00 5.37 28.79 0.15 0.15 16 4 C 0.14 2.68 2.45 44.17 0.11 2.79 16 5 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 6 N -0.68 -17.25 5.29 -499.46 -2.64 -19.90 16 7 C 0.04 0.96 4.29 85.56 0.37 1.33 16 8 C 0.50 18.66 7.71 87.66 0.68 19.33 16 9 O -0.58 -27.75 15.78 -3.03 -0.05 -27.80 16 10 N -0.60 -21.82 2.46 -826.16 -2.03 -23.85 16 11 C 0.26 12.76 5.16 85.63 0.44 13.20 16 12 C -0.54 -29.52 9.39 25.60 0.24 -29.28 16 13 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 14 C 0.01 0.68 5.46 84.65 0.46 1.14 16 15 N -0.93 -54.06 13.29 21.45 0.28 -53.78 16 16 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 17 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 C 0.11 2.86 5.17 86.38 0.45 3.30 16 21 C -0.04 -0.70 6.03 28.79 0.17 -0.52 16 22 C 0.24 5.30 15.44 89.42 1.38 6.68 16 23 N -0.49 -13.28 18.55 20.04 0.37 -12.91 16 24 C -0.10 -1.79 4.71 -19.87 -0.09 -1.88 16 25 C -0.11 -2.27 9.01 22.27 0.20 -2.06 16 26 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 27 C -0.12 -1.79 10.05 22.27 0.22 -1.57 16 28 C -0.13 -1.69 10.05 22.27 0.22 -1.46 16 29 C -0.11 -1.66 9.67 22.27 0.22 -1.44 16 30 H 0.23 3.55 7.80 -4.43 -0.03 3.52 16 31 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.35 9.52 7.70 -89.70 -0.69 8.83 16 34 H 0.12 2.94 3.39 -2.39 -0.01 2.93 16 35 H 0.08 1.58 7.10 -2.38 -0.02 1.56 16 36 H 0.03 1.67 8.07 -2.38 -0.02 1.65 16 37 H 0.00 0.19 7.42 -2.39 -0.02 0.17 16 38 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 39 H 0.09 2.34 8.07 -2.39 -0.02 2.32 16 40 H 0.10 2.01 6.44 -2.39 -0.02 1.99 16 41 H 0.13 1.78 7.22 -2.39 -0.02 1.77 16 42 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.12 2.77 7.73 -2.91 -0.02 2.75 16 44 H 0.13 1.96 8.06 -2.91 -0.02 1.93 16 45 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 46 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 47 H 0.14 1.44 8.04 -2.91 -0.02 1.42 16 Total: -1.00 -75.16 406.45 5.36 -69.80 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.30 Total: 21.70 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 7.11 Total: 0.54 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -4.02 Total: -110.42 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.05 Total: -27.80 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -75.16 5.36 -69.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271703515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.530 kcal (2) G-P(sol) polarization free energy of solvation -75.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds