Wall clock time and date at job start Tue Mar 31 2020 22:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47065 * 204.87091 * 3 2 1 5 5 H 1.09003 * 109.47090 * 304.99636 * 4 3 2 6 6 N 1.46901 * 109.47518 * 64.99799 * 4 3 2 7 7 C 1.46895 * 110.99816 * 275.00138 * 6 4 3 8 8 C 1.50706 * 109.47182 * 179.97438 * 7 6 4 9 9 O 1.21283 * 119.99503 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00081 * 179.72734 * 8 7 6 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47352 * 89.99400 * 11 10 8 13 13 H 1.08000 * 119.99828 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00146 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00224 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99948 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47358 * 89.99683 * 16 14 12 18 18 H 1.48498 * 109.46924 * 210.00000 * 16 14 12 19 19 H 1.48500 * 109.47029 * 329.99851 * 16 14 12 20 20 C 1.46492 * 120.00231 * 359.97438 * 10 8 7 21 21 C 1.53002 * 109.47540 * 90.00038 * 20 10 8 22 22 C 1.47191 * 109.47506 * 180.02562 * 21 20 10 23 23 N 5.54177 * 28.31390 * 196.88634 * 2 1 3 24 24 C 1.50705 * 109.47379 * 184.99921 * 4 3 2 25 25 C 1.38236 * 120.00018 * 279.72763 * 24 4 3 26 26 C 1.38230 * 119.99873 * 179.78777 * 25 24 4 27 27 C 1.38232 * 120.00092 * 0.43502 * 26 25 24 28 28 C 1.38234 * 120.00204 * 359.81392 * 27 26 25 29 29 C 1.38235 * 119.99808 * 99.99256 * 24 4 3 30 30 H 4.44640 * 5.63344 * 179.97438 * 4 1 2 31 31 H 1.08994 * 109.47658 * 84.86778 * 3 2 1 32 32 H 1.09005 * 109.46869 * 324.86878 * 3 2 1 33 33 H 1.00899 * 111.00258 * 151.04369 * 6 4 3 34 34 H 1.09001 * 109.47613 * 60.00104 * 7 6 4 35 35 H 1.08998 * 109.47678 * 300.00000 * 7 6 4 36 36 H 1.08995 * 109.47161 * 210.00105 * 11 10 8 37 37 H 1.09002 * 109.46900 * 329.99415 * 11 10 8 38 38 H 0.96997 * 120.00127 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.47479 * 210.00762 * 20 10 8 40 40 H 1.09006 * 109.47080 * 330.00171 * 20 10 8 41 41 H 1.08994 * 109.46887 * 300.00656 * 21 20 10 42 42 H 1.09001 * 109.46388 * 60.00135 * 21 20 10 43 43 H 1.07998 * 119.99647 * 359.97438 * 25 24 4 44 44 H 1.08001 * 119.99730 * 180.27546 * 26 25 24 45 45 H 1.08007 * 120.00021 * 179.83788 * 27 26 25 46 46 H 1.07998 * 120.00324 * 179.97438 * 28 27 26 47 47 H 1.07996 * 120.00400 * 359.97438 * 29 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3096 0.6067 5 1 2.7204 2.1525 0.0696 6 7 2.7667 1.3774 2.0217 7 6 1.4064 1.9120 2.1689 8 6 1.0434 1.9661 3.6306 9 8 1.8397 1.5962 4.4672 10 7 -0.1639 2.4311 4.0083 11 6 -0.5166 2.4842 5.4293 12 6 -0.1051 3.8170 5.9996 13 1 0.3712 4.5513 5.3668 14 6 -0.3375 4.0994 7.3289 15 7 0.0212 5.2627 7.8265 16 14 -1.1619 2.8296 8.4232 17 1 -0.1269 1.9648 9.0446 18 1 -1.9342 3.5199 9.4873 19 1 -2.0801 1.9947 7.6077 20 6 -1.1230 2.8845 2.9981 21 6 -1.9978 1.7078 2.5608 22 6 -2.9612 2.1633 1.5454 23 7 -3.7048 2.5151 0.7635 24 6 4.6573 1.3640 0.4951 25 6 5.4432 0.6826 1.4056 26 6 6.8207 0.7290 1.3007 27 6 7.4126 1.4641 0.2906 28 6 6.6269 2.1497 -0.6168 29 6 5.2492 2.0999 -0.5144 30 1 -1.0501 -0.0002 -0.0003 31 1 3.0095 -0.0911 -1.0234 32 1 3.0097 -0.8397 0.5914 33 1 3.4290 1.9227 2.5529 34 1 0.7031 1.2655 1.6440 35 1 1.3626 2.9156 1.7459 36 1 -1.5934 2.3578 5.5413 37 1 0.0002 1.6858 5.9619 38 1 -0.1427 5.4616 8.7616 39 1 -1.7524 3.6679 3.4203 40 1 -0.5842 3.2768 2.1356 41 1 -1.3685 0.9245 2.1387 42 1 -2.5367 1.3156 3.4234 43 1 4.9808 0.1116 2.1971 44 1 7.4346 0.1930 2.0094 45 1 8.4890 1.5025 0.2102 46 1 7.0893 2.7244 -1.4057 47 1 4.6353 2.6354 -1.2234 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271703518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:02 Heat of formation + Delta-G solvation = 82.753406 kcal Electronic energy + Delta-G solvation = -28634.119063 eV Core-core repulsion = 24783.939748 eV Total energy + Delta-G solvation = -3850.179314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.96287 -39.24729 -37.08298 -36.79425 -35.31294 -33.29026 -32.87124 -31.94632 -31.05018 -31.00704 -29.22556 -28.31321 -25.98552 -24.09909 -23.70984 -22.73867 -21.92131 -20.76716 -18.72753 -18.26256 -17.70075 -17.28138 -16.83377 -16.57487 -16.06137 -15.91279 -15.32272 -15.08994 -14.68274 -14.54367 -14.34158 -14.27572 -13.81736 -13.58107 -13.55394 -13.44001 -12.97416 -12.80619 -12.65664 -12.60109 -12.51880 -12.50559 -12.22272 -12.07494 -11.67853 -11.57674 -11.19831 -11.16811 -11.06742 -10.88652 -10.56534 -10.37155 -10.21792 -10.11687 -9.59435 -9.10420 -9.06428 -8.89876 -8.62582 -8.44979 -7.89472 -6.12247 -4.11822 1.12969 1.25361 2.64474 2.67903 2.72350 2.76244 3.25802 3.26605 3.31808 3.34358 3.44841 3.62749 3.95176 4.15448 4.29114 4.36162 4.60542 4.73985 4.84601 4.89373 4.98511 5.00177 5.04780 5.05859 5.17366 5.22576 5.30212 5.33372 5.41611 5.43744 5.50104 5.59171 5.72996 5.77514 5.78954 5.90306 5.93017 6.00863 6.27565 6.36573 6.37637 6.57211 6.80835 6.84473 6.93909 7.21799 7.32236 7.49000 7.49466 7.55843 8.10335 8.41818 8.86421 8.92336 9.47489 11.01019 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009367 B = 0.003368 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.371365 B = 8311.420469 C =10499.250679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.163 4.163 3 C -0.001 4.001 4 C 0.134 3.866 5 H 0.057 0.943 6 N -0.662 5.662 7 C 0.023 3.977 8 C 0.511 3.489 9 O -0.519 6.519 10 N -0.594 5.594 11 C 0.216 3.784 12 C -0.531 4.531 13 H 0.074 0.926 14 C 0.073 3.927 15 N -0.896 5.896 16 Si 0.875 3.125 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.265 1.265 20 C 0.118 3.882 21 C -0.054 4.054 22 C 0.215 3.785 23 N -0.440 5.440 24 C -0.093 4.093 25 C -0.094 4.094 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.124 4.124 29 C -0.111 4.111 30 H 0.213 0.787 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.357 0.643 34 H 0.111 0.889 35 H 0.055 0.945 36 H 0.032 0.968 37 H 0.040 0.960 38 H 0.265 0.735 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.136 0.864 44 H 0.123 0.877 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.738 -10.261 -18.189 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.163 4.163 3 C -0.038 4.038 4 C 0.024 3.976 5 H 0.075 0.925 6 N -0.296 5.296 7 C -0.109 4.109 8 C 0.297 3.703 9 O -0.393 6.393 10 N -0.326 5.326 11 C 0.095 3.905 12 C -0.569 4.569 13 H 0.092 0.908 14 C -0.129 4.129 15 N -0.535 5.535 16 Si 0.702 3.298 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.009 4.009 21 C -0.096 4.096 22 C -0.103 4.103 23 N -0.118 5.118 24 C -0.094 4.094 25 C -0.112 4.112 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.142 4.142 29 C -0.130 4.130 30 H 0.230 0.770 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.178 0.822 34 H 0.128 0.872 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.141 0.859 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.868 -10.469 -18.660 22.471 hybrid contribution -0.249 0.413 0.814 0.946 sum 6.618 -10.055 -17.846 21.526 Atomic orbital electron populations 1.24784 0.95863 1.01049 1.02160 1.22938 0.94354 1.00038 0.98996 1.18849 0.84790 0.98706 1.01503 1.20347 0.90468 0.96775 0.89964 0.92515 1.60242 1.02946 1.58557 1.07843 1.22358 0.93061 0.99776 0.95719 1.20239 0.82033 0.77969 0.90087 1.90689 1.48332 1.47025 1.53285 1.47857 1.13911 1.62675 1.08193 1.19707 0.95687 0.98711 0.76353 1.21302 1.40389 0.99450 0.95796 0.90758 1.24855 0.95167 0.95239 0.97685 1.69892 1.47168 1.21973 1.14417 0.86866 0.80083 0.81894 0.80924 1.19875 1.21147 1.18969 1.21312 0.92091 0.94780 0.92678 1.19952 0.94337 1.00719 0.94572 1.29005 0.93886 0.93509 0.93895 1.81180 1.10622 1.08658 1.11290 1.19813 0.94351 0.98696 0.96521 1.21199 0.93350 0.98232 0.98449 1.21223 0.95027 0.99371 0.98323 1.21192 0.99802 0.97405 0.95355 1.21092 0.93689 0.99949 0.99477 1.21037 0.94986 0.98889 0.98045 0.76966 0.89267 0.88365 0.82245 0.87158 0.92754 0.95054 0.94234 0.92525 0.88500 0.90525 0.87550 0.86558 0.84597 0.85937 0.86269 0.86176 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.12 16.81 29.55 0.50 -1.62 16 2 C -0.16 -1.68 11.25 -37.12 -0.42 -2.10 16 3 C 0.00 -0.01 5.37 -29.52 -0.16 -0.17 16 4 C 0.13 1.34 2.45 -68.86 -0.17 1.17 16 5 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 6 N -0.66 -8.47 5.28 -109.22 -0.58 -9.05 16 7 C 0.02 0.31 4.29 -4.98 -0.02 0.28 16 8 C 0.51 9.29 7.71 -10.98 -0.08 9.20 16 9 O -0.52 -11.72 15.78 5.56 0.09 -11.64 16 10 N -0.59 -10.60 2.46 -175.06 -0.43 -11.03 16 11 C 0.22 4.78 4.23 -5.19 -0.02 4.75 16 12 C -0.53 -14.39 9.94 -34.44 -0.34 -14.73 16 13 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 15 N -0.90 -26.90 13.96 55.43 0.77 -26.12 16 16 Si 0.88 20.69 27.47 -169.99 -4.67 16.02 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 20 C 0.12 1.55 5.17 -4.05 -0.02 1.53 16 21 C -0.05 -0.54 6.03 -29.52 -0.18 -0.72 16 22 C 0.22 2.44 15.43 -20.80 -0.32 2.12 16 23 N -0.44 -6.11 18.53 42.11 0.78 -5.33 16 24 C -0.09 -0.91 4.72 -104.62 -0.49 -1.40 16 25 C -0.09 -0.95 9.00 -39.59 -0.36 -1.31 16 26 C -0.12 -1.12 10.05 -39.59 -0.40 -1.51 16 27 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 28 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 29 C -0.11 -0.98 9.67 -39.58 -0.38 -1.37 16 30 H 0.21 1.55 7.71 -54.08 -0.42 1.14 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.36 5.06 7.68 -39.29 -0.30 4.76 16 34 H 0.11 1.30 3.18 -51.93 -0.17 1.13 16 35 H 0.05 0.68 7.30 -51.93 -0.38 0.30 16 36 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 37 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 40 H 0.08 0.87 6.43 -51.93 -0.33 0.54 16 41 H 0.11 0.91 6.27 -51.93 -0.33 0.59 16 42 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.14 1.44 7.71 -52.49 -0.40 1.04 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 47 H 0.12 0.88 8.04 -52.49 -0.42 0.46 16 LS Contribution 400.90 15.07 6.04 6.04 Total: -1.00 -34.09 400.90 -8.17 -42.26 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.42 Total: 5.62 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -3.76 Total: -6.76 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.55 Total: -51.54 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.09 -8.17 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271703518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.017 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds