Wall clock time and date at job start Tue Mar 31 2020 22:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47065 * 204.87091 * 3 2 1 5 5 H 1.09003 * 109.47090 * 304.99636 * 4 3 2 6 6 N 1.46901 * 109.47518 * 64.99799 * 4 3 2 7 7 C 1.46895 * 110.99816 * 275.00138 * 6 4 3 8 8 C 1.50706 * 109.47182 * 179.97438 * 7 6 4 9 9 O 1.21283 * 119.99503 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00081 * 179.72734 * 8 7 6 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47352 * 89.99400 * 11 10 8 13 13 H 1.08000 * 119.99828 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00146 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00224 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99948 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47358 * 89.99683 * 16 14 12 18 18 H 1.48498 * 109.46924 * 210.00000 * 16 14 12 19 19 H 1.48500 * 109.47029 * 329.99851 * 16 14 12 20 20 C 1.46492 * 120.00231 * 359.97438 * 10 8 7 21 21 C 1.53002 * 109.47540 * 90.00038 * 20 10 8 22 22 C 1.47191 * 109.47506 * 180.02562 * 21 20 10 23 23 N 5.54177 * 28.31390 * 196.88634 * 2 1 3 24 24 C 1.50705 * 109.47379 * 184.99921 * 4 3 2 25 25 C 1.38236 * 120.00018 * 279.72763 * 24 4 3 26 26 C 1.38230 * 119.99873 * 179.78777 * 25 24 4 27 27 C 1.38232 * 120.00092 * 0.43502 * 26 25 24 28 28 C 1.38234 * 120.00204 * 359.81392 * 27 26 25 29 29 C 1.38235 * 119.99808 * 99.99256 * 24 4 3 30 30 H 4.44640 * 5.63344 * 179.97438 * 4 1 2 31 31 H 1.08994 * 109.47658 * 84.86778 * 3 2 1 32 32 H 1.09005 * 109.46869 * 324.86878 * 3 2 1 33 33 H 1.00899 * 111.00258 * 151.04369 * 6 4 3 34 34 H 1.09001 * 109.47613 * 60.00104 * 7 6 4 35 35 H 1.08998 * 109.47678 * 300.00000 * 7 6 4 36 36 H 1.08995 * 109.47161 * 210.00105 * 11 10 8 37 37 H 1.09002 * 109.46900 * 329.99415 * 11 10 8 38 38 H 0.96997 * 120.00127 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.47479 * 210.00762 * 20 10 8 40 40 H 1.09006 * 109.47080 * 330.00171 * 20 10 8 41 41 H 1.08994 * 109.46887 * 300.00656 * 21 20 10 42 42 H 1.09001 * 109.46388 * 60.00135 * 21 20 10 43 43 H 1.07998 * 119.99647 * 359.97438 * 25 24 4 44 44 H 1.08001 * 119.99730 * 180.27546 * 26 25 24 45 45 H 1.08007 * 120.00021 * 179.83788 * 27 26 25 46 46 H 1.07998 * 120.00324 * 179.97438 * 28 27 26 47 47 H 1.07996 * 120.00400 * 359.97438 * 29 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3096 0.6067 5 1 2.7204 2.1525 0.0696 6 7 2.7667 1.3774 2.0217 7 6 1.4064 1.9120 2.1689 8 6 1.0434 1.9661 3.6306 9 8 1.8397 1.5962 4.4672 10 7 -0.1639 2.4311 4.0083 11 6 -0.5166 2.4842 5.4293 12 6 -0.1051 3.8170 5.9996 13 1 0.3712 4.5513 5.3668 14 6 -0.3375 4.0994 7.3289 15 7 0.0212 5.2627 7.8265 16 14 -1.1619 2.8296 8.4232 17 1 -0.1269 1.9648 9.0446 18 1 -1.9342 3.5199 9.4873 19 1 -2.0801 1.9947 7.6077 20 6 -1.1230 2.8845 2.9981 21 6 -1.9978 1.7078 2.5608 22 6 -2.9612 2.1633 1.5454 23 7 -3.7048 2.5151 0.7635 24 6 4.6573 1.3640 0.4951 25 6 5.4432 0.6826 1.4056 26 6 6.8207 0.7290 1.3007 27 6 7.4126 1.4641 0.2906 28 6 6.6269 2.1497 -0.6168 29 6 5.2492 2.0999 -0.5144 30 1 -1.0501 -0.0002 -0.0003 31 1 3.0095 -0.0911 -1.0234 32 1 3.0097 -0.8397 0.5914 33 1 3.4290 1.9227 2.5529 34 1 0.7031 1.2655 1.6440 35 1 1.3626 2.9156 1.7459 36 1 -1.5934 2.3578 5.5413 37 1 0.0002 1.6858 5.9619 38 1 -0.1427 5.4616 8.7616 39 1 -1.7524 3.6679 3.4203 40 1 -0.5842 3.2768 2.1356 41 1 -1.3685 0.9245 2.1387 42 1 -2.5367 1.3156 3.4234 43 1 4.9808 0.1116 2.1971 44 1 7.4346 0.1930 2.0094 45 1 8.4890 1.5025 0.2102 46 1 7.0893 2.7244 -1.4057 47 1 4.6353 2.6354 -1.2234 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271703518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:01 Heat of formation + Delta-G solvation = 62.079952 kcal Electronic energy + Delta-G solvation = -28635.015531 eV Core-core repulsion = 24783.939748 eV Total energy + Delta-G solvation = -3851.075783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02003 -40.30138 -38.07705 -37.73543 -36.68665 -34.82336 -34.08386 -32.93973 -32.28024 -31.72059 -30.23117 -29.67282 -27.21720 -25.26558 -24.68977 -23.80316 -23.14515 -21.52282 -20.04032 -19.19653 -18.99763 -18.42743 -18.20426 -17.67855 -17.14631 -16.93447 -16.36474 -16.21857 -15.89460 -15.72997 -15.23588 -15.10150 -15.04365 -14.67303 -14.63989 -14.40481 -14.18630 -13.90225 -13.77623 -13.64145 -13.56620 -13.50488 -13.31600 -13.26875 -13.01901 -12.75852 -12.67840 -12.38237 -11.98383 -11.92822 -11.87557 -11.83714 -11.68482 -11.16708 -10.92224 -10.76846 -10.48373 -9.75767 -9.62978 -9.47573 -9.39630 -8.27718 -6.32349 0.44069 0.56505 1.38882 1.43308 1.50398 1.67136 1.83732 1.85461 1.93569 2.01114 2.20967 2.36861 2.90202 3.02719 3.09409 3.25248 3.45224 3.73609 3.92180 3.99270 4.04747 4.06926 4.22411 4.28206 4.31624 4.36835 4.40250 4.45790 4.59101 4.67866 4.74607 4.78119 4.80734 4.87427 4.99708 5.05350 5.08230 5.12152 5.23056 5.25567 5.52753 5.58765 5.60831 5.66347 5.69334 5.98048 6.16795 6.26214 6.29987 6.59474 6.69296 6.71175 6.75916 7.28137 7.46745 8.89160 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009367 B = 0.003368 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.371365 B = 8311.420469 C =10499.250679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.189 4.189 3 C 0.001 3.999 4 C 0.140 3.860 5 H 0.064 0.936 6 N -0.672 5.672 7 C 0.037 3.963 8 C 0.504 3.496 9 O -0.571 6.571 10 N -0.596 5.596 11 C 0.223 3.777 12 C -0.533 4.533 13 H 0.028 0.972 14 C 0.009 3.991 15 N -0.949 5.949 16 Si 0.944 3.056 17 H -0.279 1.279 18 H -0.283 1.283 19 H -0.227 1.227 20 C 0.111 3.889 21 C -0.040 4.040 22 C 0.244 3.756 23 N -0.481 5.481 24 C -0.101 4.101 25 C -0.110 4.110 26 C -0.133 4.133 27 C -0.125 4.125 28 C -0.128 4.128 29 C -0.117 4.117 30 H 0.234 0.766 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.345 0.655 34 H 0.133 0.867 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.024 0.976 38 H 0.266 0.734 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.122 0.878 44 H 0.132 0.868 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.742 -11.843 -20.056 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.189 4.189 3 C -0.036 4.036 4 C 0.031 3.969 5 H 0.082 0.918 6 N -0.305 5.305 7 C -0.095 4.095 8 C 0.292 3.708 9 O -0.450 6.450 10 N -0.327 5.327 11 C 0.101 3.899 12 C -0.571 4.571 13 H 0.047 0.953 14 C -0.188 4.188 15 N -0.590 5.590 16 Si 0.767 3.233 17 H -0.205 1.205 18 H -0.209 1.209 19 H -0.150 1.150 20 C -0.014 4.014 21 C -0.081 4.081 22 C -0.074 4.074 23 N -0.159 5.159 24 C -0.101 4.101 25 C -0.128 4.128 26 C -0.151 4.151 27 C -0.142 4.142 28 C -0.146 4.146 29 C -0.135 4.135 30 H 0.250 0.750 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.165 0.835 34 H 0.150 0.850 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.140 0.860 44 H 0.150 0.850 45 H 0.157 0.843 46 H 0.160 0.840 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.835 -12.059 -20.599 24.572 hybrid contribution 0.166 0.982 1.333 1.663 sum 6.000 -11.078 -19.267 23.020 Atomic orbital electron populations 1.25351 0.96501 1.00076 1.01390 1.23280 0.94969 1.00928 0.99744 1.18840 0.84627 0.97831 1.02280 1.20365 0.90816 0.97520 0.88199 0.91807 1.60268 1.02314 1.58308 1.09579 1.22312 0.94008 1.01061 0.92106 1.21092 0.81293 0.76635 0.91759 1.90661 1.49822 1.49381 1.55115 1.47824 1.14933 1.62478 1.07466 1.19401 0.96770 0.95013 0.78708 1.21605 1.39276 1.00693 0.95558 0.95329 1.25847 0.96099 0.97393 0.99500 1.70061 1.49392 1.24576 1.14935 0.85773 0.79398 0.79187 0.78963 1.20454 1.20888 1.14962 1.21525 0.91806 0.95948 0.92074 1.19860 0.93858 0.99559 0.94870 1.28981 0.93056 0.92299 0.93051 1.81230 1.12039 1.09815 1.12792 1.19829 0.94139 0.99190 0.96975 1.21190 0.94029 0.98958 0.98655 1.21427 0.94836 0.99816 0.99015 1.21490 1.01021 0.96839 0.94896 1.21422 0.93614 0.99699 0.99827 1.21273 0.95603 0.98644 0.98015 0.74951 0.87500 0.89074 0.83540 0.85013 0.91470 0.92175 0.95773 0.92528 0.89414 0.88541 0.85359 0.85045 0.85953 0.85007 0.84271 0.83979 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.46 16.81 74.32 1.25 -2.21 16 2 C -0.19 -3.46 11.25 31.13 0.35 -3.11 16 3 C 0.00 0.02 5.37 28.79 0.15 0.18 16 4 C 0.14 2.65 2.45 44.17 0.11 2.76 16 5 H 0.06 1.12 7.66 -2.39 -0.02 1.11 16 6 N -0.67 -17.02 5.28 -499.46 -2.64 -19.66 16 7 C 0.04 0.94 4.29 85.56 0.37 1.30 16 8 C 0.50 18.17 7.71 87.66 0.68 18.85 16 9 O -0.57 -26.47 15.78 -3.04 -0.05 -26.52 16 10 N -0.60 -20.65 2.46 -826.15 -2.03 -22.68 16 11 C 0.22 9.69 4.23 85.63 0.36 10.05 16 12 C -0.53 -29.53 9.94 25.60 0.25 -29.27 16 13 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 14 C 0.01 0.52 5.47 84.65 0.46 0.98 16 15 N -0.95 -58.87 13.96 21.44 0.30 -58.57 16 16 Si 0.94 42.39 27.47 68.60 1.88 44.28 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.23 -8.73 6.54 99.48 0.65 -8.08 16 20 C 0.11 2.68 5.17 86.38 0.45 3.13 16 21 C -0.04 -0.67 6.03 28.79 0.17 -0.49 16 22 C 0.24 4.78 15.43 89.45 1.38 6.16 16 23 N -0.48 -12.24 18.53 19.99 0.37 -11.87 16 24 C -0.10 -1.90 4.72 -19.86 -0.09 -2.00 16 25 C -0.11 -2.26 9.00 22.27 0.20 -2.06 16 26 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 27 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 28 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 29 C -0.12 -1.89 9.67 22.27 0.22 -1.67 16 30 H 0.23 2.47 7.71 -4.41 -0.03 2.44 16 31 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.35 10.10 7.68 -89.69 -0.69 9.41 16 34 H 0.13 2.77 3.18 -2.39 -0.01 2.76 16 35 H 0.07 1.56 7.30 -2.39 -0.02 1.54 16 36 H 0.06 2.29 7.13 -2.39 -0.02 2.27 16 37 H 0.02 1.14 6.85 -2.39 -0.02 1.12 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.09 2.32 8.07 -2.39 -0.02 2.30 16 40 H 0.10 1.95 6.43 -2.38 -0.02 1.93 16 41 H 0.13 1.64 6.27 -2.39 -0.01 1.62 16 42 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.12 2.77 7.71 -2.91 -0.02 2.75 16 44 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 45 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 46 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 47 H 0.14 1.69 8.04 -2.91 -0.02 1.66 16 Total: -1.00 -77.81 400.90 5.07 -72.74 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.25 Total: 25.26 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 6.98 Total: -2.99 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -4.00 Total: -112.78 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.28 kcal Total: -77.81 5.07 -72.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271703518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.820 kcal (2) G-P(sol) polarization free energy of solvation -77.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds