Wall clock time and date at job start Tue Mar 31 2020 22:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47340 * 346.91654 * 3 2 1 5 5 C 1.36881 * 120.00297 * 261.40674 * 4 3 2 6 6 H 1.07994 * 120.00356 * 197.90352 * 5 4 3 7 7 C 1.39018 * 119.99649 * 17.91175 * 5 4 3 8 8 N 1.31395 * 120.00214 * 13.81302 * 7 5 4 9 9 Si 1.86801 * 119.99699 * 193.81665 * 7 5 4 10 10 H 1.48503 * 109.47058 * 90.00124 * 9 7 5 11 11 H 1.48503 * 109.47047 * 209.99332 * 9 7 5 12 12 H 1.48495 * 109.47003 * 329.99853 * 9 7 5 13 13 C 1.34777 * 119.99760 * 81.41426 * 4 3 2 14 14 O 1.21721 * 119.99926 * 181.64098 * 13 4 3 15 15 C 1.46823 * 120.00148 * 1.63477 * 13 4 3 16 16 C 1.43199 * 119.99703 * 352.27556 * 15 13 4 17 17 N 2.61795 * 102.28259 * 97.47464 * 2 1 3 18 18 C 1.38178 * 120.00061 * 172.54799 * 15 13 4 19 19 C 1.41813 * 119.99844 * 185.91068 * 18 15 13 20 20 C 1.46971 * 127.08709 * 16.40745 * 19 18 15 21 21 C 1.34324 * 106.38747 * 179.97438 * 20 19 18 22 22 C 1.50700 * 125.38096 * 180.02562 * 21 20 19 23 23 N 1.36541 * 109.24056 * 0.02562 * 21 20 19 24 24 C 1.46493 * 124.77364 * 179.97438 * 23 21 20 25 25 C 1.52998 * 109.47447 * 90.02321 * 24 23 21 26 26 C 1.52994 * 109.47330 * 180.02562 * 25 24 23 27 27 C 1.34588 * 110.44821 * 359.74180 * 23 21 20 28 28 C 1.50700 * 125.95632 * 180.25804 * 27 23 21 29 29 H 4.40638 * 5.51286 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.46891 * 226.91593 * 3 2 1 31 31 H 1.09005 * 109.47450 * 106.92014 * 3 2 1 32 32 H 0.96997 * 120.00094 * 180.02562 * 8 7 5 33 33 H 1.08004 * 119.99790 * 5.90452 * 18 15 13 34 34 H 1.07998 * 126.80306 * 359.94464 * 20 19 18 35 35 H 1.09004 * 109.46885 * 89.97656 * 22 21 20 36 36 H 1.09000 * 109.47440 * 209.97783 * 22 21 20 37 37 H 1.08996 * 109.47268 * 329.98364 * 22 21 20 38 38 H 1.09000 * 109.47143 * 210.02085 * 24 23 21 39 39 H 1.09001 * 109.47137 * 330.01948 * 24 23 21 40 40 H 1.09000 * 109.46756 * 300.00001 * 25 24 23 41 41 H 1.09001 * 109.47256 * 59.99700 * 25 24 23 42 42 H 1.09007 * 109.47215 * 180.02562 * 26 25 24 43 43 H 1.09000 * 109.47190 * 299.99721 * 26 25 24 44 44 H 1.09001 * 109.47208 * 59.99656 * 26 25 24 45 45 H 1.08999 * 109.47396 * 270.20900 * 28 27 23 46 46 H 1.09006 * 109.47162 * 30.20335 * 28 27 23 47 47 H 1.08998 * 109.47419 * 150.20352 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3445 0.3127 5 6 3.5303 -1.6500 1.5870 6 1 4.1488 -2.5167 1.7674 7 6 3.1354 -0.8447 2.6491 8 7 2.1763 0.0380 2.4832 9 14 3.9682 -1.0175 4.3122 10 1 5.1369 -0.1037 4.3779 11 1 3.0051 -0.6671 5.3869 12 1 4.4246 -2.4188 4.4940 13 6 3.1958 -2.2811 -0.6546 14 8 3.5737 -3.4071 -0.3885 15 6 2.8059 -1.9432 -2.0292 16 6 2.2064 -0.6739 -2.3119 17 7 1.7310 0.3328 -2.5363 18 6 3.0123 -2.8524 -3.0491 19 6 2.7531 -2.4812 -4.3930 20 6 2.5907 -1.1191 -4.9207 21 6 2.3617 -1.2478 -6.2380 22 6 2.1336 -0.1099 -7.1993 23 7 2.3683 -2.5726 -6.5685 24 6 2.1525 -3.0979 -7.9189 25 6 3.4956 -3.2110 -8.6429 26 6 3.2702 -3.7590 -10.0534 27 6 2.6060 -3.3276 -5.4800 28 6 2.6936 -4.8317 -5.4483 29 1 -1.0497 -0.0003 0.0003 30 1 3.0090 0.7028 0.7506 31 1 3.0093 0.2999 -0.9832 32 1 1.9011 0.6002 3.2242 33 1 3.3712 -3.8456 -2.8228 34 1 2.6443 -0.1975 -4.3603 35 1 3.0891 0.2148 -7.6113 36 1 1.4833 -0.4425 -8.0084 37 1 1.6635 0.7212 -6.6736 38 1 1.6898 -4.0828 -7.8560 39 1 1.4978 -2.4235 -8.4708 40 1 3.9584 -2.2261 -8.7058 41 1 4.1503 -3.8854 -8.0909 42 1 4.2272 -3.8399 -10.5690 43 1 2.8072 -4.7438 -9.9909 44 1 2.6157 -3.0842 -10.6051 45 1 1.7043 -5.2495 -5.2620 46 1 3.0665 -5.1942 -6.4063 47 1 3.3735 -5.1394 -4.6538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281593872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:22 Heat of formation + Delta-G solvation = 144.272826 kcal Electronic energy + Delta-G solvation = -28978.865277 eV Core-core repulsion = 25131.353645 eV Total energy + Delta-G solvation = -3847.511632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.43444 -39.04925 -36.45065 -35.71980 -35.00123 -33.45718 -32.42586 -31.95435 -31.14906 -30.37508 -29.24569 -26.86903 -26.18785 -25.32789 -24.29366 -22.74587 -22.06647 -20.36759 -19.97807 -18.56342 -17.82148 -17.04990 -16.56480 -16.24011 -15.60262 -15.43569 -14.96237 -14.59910 -14.21049 -14.14245 -13.99455 -13.83039 -13.65137 -13.37680 -13.22096 -13.03584 -12.77539 -12.69993 -12.54686 -12.51021 -12.41813 -12.29187 -12.14817 -12.01370 -11.75459 -11.54989 -11.44144 -11.26790 -11.11991 -11.05027 -10.62346 -10.37827 -10.23175 -9.70877 -9.30034 -9.25270 -8.72477 -8.47141 -8.18703 -7.86257 -7.30222 -6.32784 -3.84774 0.99138 2.30345 2.73015 3.15184 3.21297 3.25707 3.30767 3.41404 3.68597 3.92158 4.15191 4.21702 4.26533 4.37647 4.52082 4.53283 4.73146 4.76337 4.79952 4.82209 4.94046 5.00251 5.07375 5.15694 5.17192 5.19727 5.41467 5.44288 5.46056 5.50575 5.57377 5.63975 5.66008 5.67276 5.79278 5.82675 5.89961 6.11763 6.28837 6.40274 6.67944 6.71882 6.93370 7.03467 7.16449 7.20018 7.30420 7.52301 8.04269 8.22205 8.42314 8.93398 9.10848 9.32620 9.90660 10.64986 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.002759 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.560034 B =10145.949000 C =10966.885459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.106 4.106 3 C 0.207 3.793 4 N -0.425 5.425 5 C -0.300 4.300 6 H 0.110 0.890 7 C 0.026 3.974 8 N -0.861 5.861 9 Si 0.931 3.069 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.494 3.506 14 O -0.584 6.584 15 C -0.120 4.120 16 C 0.283 3.717 17 N -0.445 5.445 18 C 0.055 3.945 19 C -0.175 4.175 20 C -0.167 4.167 21 C 0.004 3.996 22 C -0.081 4.081 23 N -0.434 5.434 24 C 0.098 3.902 25 C -0.141 4.141 26 C -0.150 4.150 27 C 0.068 3.932 28 C -0.091 4.091 29 H 0.198 0.802 30 H 0.123 0.877 31 H 0.071 0.929 32 H 0.271 0.729 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 -4.663 -22.811 23.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.108 4.108 3 C 0.083 3.917 4 N -0.140 5.140 5 C -0.428 4.428 6 H 0.128 0.872 7 C -0.179 4.179 8 N -0.499 5.499 9 Si 0.757 3.243 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.192 1.192 13 C 0.284 3.716 14 O -0.471 6.471 15 C -0.128 4.128 16 C -0.027 4.027 17 N -0.123 5.123 18 C 0.029 3.971 19 C -0.182 4.182 20 C -0.191 4.191 21 C -0.103 4.103 22 C -0.139 4.139 23 N -0.109 5.109 24 C -0.024 4.024 25 C -0.179 4.179 26 C -0.208 4.208 27 C -0.048 4.048 28 C -0.148 4.148 29 H 0.215 0.785 30 H 0.140 0.860 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.061 -3.579 -23.154 23.429 hybrid contribution 0.008 -0.174 1.103 1.117 sum -0.053 -3.753 -22.051 22.368 Atomic orbital electron populations 1.24173 0.95295 1.01903 1.06510 1.22962 0.94141 0.98516 0.95158 1.19015 0.84624 0.87463 1.00575 1.43655 1.53441 1.08231 1.08701 1.19829 1.28773 1.12826 0.81352 0.87224 1.25443 0.95584 0.96730 1.00096 1.70049 1.24729 1.22313 1.32834 0.85842 0.78701 0.79083 0.80634 1.20214 1.20968 1.19167 1.17244 0.85531 0.85154 0.83698 1.90638 1.53966 1.20227 1.82233 1.18611 1.08754 0.89521 0.95880 1.25223 0.93573 0.92775 0.91171 1.81137 1.09365 1.11288 1.10542 1.21001 0.89979 0.97827 0.88270 1.18614 1.14651 0.92486 0.92447 1.22433 1.06383 0.97254 0.93011 1.20108 1.10941 0.83694 0.95557 1.20302 1.01803 0.94800 0.96986 1.43485 1.54831 1.05547 1.07076 1.21944 0.98500 1.00872 0.81086 1.21915 0.96774 1.02750 0.96439 1.21704 1.02287 1.01151 0.95621 1.20821 1.04491 0.93575 0.85865 1.20450 1.03489 0.87539 1.03346 0.78523 0.85960 0.91172 0.91866 0.83571 0.83262 0.91318 0.92154 0.90171 0.89229 0.89275 0.91108 0.91011 0.91981 0.92346 0.92420 0.90440 0.91633 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -6.11 19.21 29.55 0.57 -5.55 16 2 C -0.11 -2.67 8.57 -37.13 -0.32 -2.98 16 3 C 0.21 5.14 4.69 -6.83 -0.03 5.11 16 4 N -0.42 -11.29 2.61 -119.37 -0.31 -11.60 16 5 C -0.30 -8.32 9.36 -15.01 -0.14 -8.46 16 6 H 0.11 3.10 7.35 -52.49 -0.39 2.72 16 7 C 0.03 0.68 5.06 -17.45 -0.09 0.59 16 8 N -0.86 -23.19 9.21 55.50 0.51 -22.68 16 9 Si 0.93 20.57 29.58 -169.99 -5.03 15.55 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.49 12.47 7.47 -12.79 -0.10 12.38 16 14 O -0.58 -15.88 15.97 5.17 0.08 -15.80 16 15 C -0.12 -2.53 5.87 -104.52 -0.61 -3.14 16 16 C 0.28 5.94 6.87 -22.48 -0.15 5.79 16 17 N -0.44 -9.39 14.70 41.82 0.61 -8.77 16 18 C 0.06 0.97 9.30 -38.24 -0.36 0.61 16 19 C -0.18 -2.74 5.92 -104.88 -0.62 -3.36 16 20 C -0.17 -2.65 9.38 -37.43 -0.35 -3.00 16 21 C 0.00 0.05 6.84 -81.88 -0.56 -0.51 16 22 C -0.08 -0.77 10.04 36.01 0.36 -0.41 16 23 N -0.43 -4.76 2.68 -107.50 -0.29 -5.05 16 24 C 0.10 0.68 5.36 -4.05 -0.02 0.66 16 25 C -0.14 -0.85 6.26 -26.73 -0.17 -1.02 16 26 C -0.15 -0.64 9.91 37.15 0.37 -0.28 16 27 C 0.07 0.84 6.95 -81.27 -0.56 0.28 16 28 C -0.09 -0.80 9.62 36.01 0.35 -0.45 16 29 H 0.20 3.87 7.80 -54.11 -0.42 3.45 16 30 H 0.12 3.19 6.01 -51.93 -0.31 2.88 16 31 H 0.07 1.64 4.45 -51.93 -0.23 1.40 16 32 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.15 2.37 7.07 -52.48 -0.37 2.00 16 34 H 0.15 2.60 5.08 -52.49 -0.27 2.33 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.45 6.92 -51.93 -0.36 0.09 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.51 7.51 -51.93 -0.39 0.12 16 39 H 0.09 0.53 6.88 -51.93 -0.36 0.18 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 42 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 43 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.43 7.58 -51.93 -0.39 0.04 16 47 H 0.09 0.79 7.51 -51.93 -0.39 0.40 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -33.25 390.32 -7.37 -40.62 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.39 Total: 5.58 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.44 Total: -3.74 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.53 Total: -48.09 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.08 Total: -15.80 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.25 -7.37 -40.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281593872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.890 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds