Wall clock time and date at job start Tue Mar 31 2020 22:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47340 * 346.91654 * 3 2 1 5 5 C 1.36881 * 120.00297 * 261.40674 * 4 3 2 6 6 H 1.07994 * 120.00356 * 197.90352 * 5 4 3 7 7 C 1.39018 * 119.99649 * 17.91175 * 5 4 3 8 8 N 1.31395 * 120.00214 * 13.81302 * 7 5 4 9 9 Si 1.86801 * 119.99699 * 193.81665 * 7 5 4 10 10 H 1.48503 * 109.47058 * 90.00124 * 9 7 5 11 11 H 1.48503 * 109.47047 * 209.99332 * 9 7 5 12 12 H 1.48495 * 109.47003 * 329.99853 * 9 7 5 13 13 C 1.34777 * 119.99760 * 81.41426 * 4 3 2 14 14 O 1.21721 * 119.99926 * 181.64098 * 13 4 3 15 15 C 1.46823 * 120.00148 * 1.63477 * 13 4 3 16 16 C 1.43199 * 119.99703 * 352.27556 * 15 13 4 17 17 N 2.61795 * 102.28259 * 97.47464 * 2 1 3 18 18 C 1.38178 * 120.00061 * 172.54799 * 15 13 4 19 19 C 1.41813 * 119.99844 * 185.91068 * 18 15 13 20 20 C 1.46971 * 127.08709 * 16.40745 * 19 18 15 21 21 C 1.34324 * 106.38747 * 179.97438 * 20 19 18 22 22 C 1.50700 * 125.38096 * 180.02562 * 21 20 19 23 23 N 1.36541 * 109.24056 * 0.02562 * 21 20 19 24 24 C 1.46493 * 124.77364 * 179.97438 * 23 21 20 25 25 C 1.52998 * 109.47447 * 90.02321 * 24 23 21 26 26 C 1.52994 * 109.47330 * 180.02562 * 25 24 23 27 27 C 1.34588 * 110.44821 * 359.74180 * 23 21 20 28 28 C 1.50700 * 125.95632 * 180.25804 * 27 23 21 29 29 H 4.40638 * 5.51286 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.46891 * 226.91593 * 3 2 1 31 31 H 1.09005 * 109.47450 * 106.92014 * 3 2 1 32 32 H 0.96997 * 120.00094 * 180.02562 * 8 7 5 33 33 H 1.08004 * 119.99790 * 5.90452 * 18 15 13 34 34 H 1.07998 * 126.80306 * 359.94464 * 20 19 18 35 35 H 1.09004 * 109.46885 * 89.97656 * 22 21 20 36 36 H 1.09000 * 109.47440 * 209.97783 * 22 21 20 37 37 H 1.08996 * 109.47268 * 329.98364 * 22 21 20 38 38 H 1.09000 * 109.47143 * 210.02085 * 24 23 21 39 39 H 1.09001 * 109.47137 * 330.01948 * 24 23 21 40 40 H 1.09000 * 109.46756 * 300.00001 * 25 24 23 41 41 H 1.09001 * 109.47256 * 59.99700 * 25 24 23 42 42 H 1.09007 * 109.47215 * 180.02562 * 26 25 24 43 43 H 1.09000 * 109.47190 * 299.99721 * 26 25 24 44 44 H 1.09001 * 109.47208 * 59.99656 * 26 25 24 45 45 H 1.08999 * 109.47396 * 270.20900 * 28 27 23 46 46 H 1.09006 * 109.47162 * 30.20335 * 28 27 23 47 47 H 1.08998 * 109.47419 * 150.20352 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3445 0.3127 5 6 3.5303 -1.6500 1.5870 6 1 4.1488 -2.5167 1.7674 7 6 3.1354 -0.8447 2.6491 8 7 2.1763 0.0380 2.4832 9 14 3.9682 -1.0175 4.3122 10 1 5.1369 -0.1037 4.3779 11 1 3.0051 -0.6671 5.3869 12 1 4.4246 -2.4188 4.4940 13 6 3.1958 -2.2811 -0.6546 14 8 3.5737 -3.4071 -0.3885 15 6 2.8059 -1.9432 -2.0292 16 6 2.2064 -0.6739 -2.3119 17 7 1.7310 0.3328 -2.5363 18 6 3.0123 -2.8524 -3.0491 19 6 2.7531 -2.4812 -4.3930 20 6 2.5907 -1.1191 -4.9207 21 6 2.3617 -1.2478 -6.2380 22 6 2.1336 -0.1099 -7.1993 23 7 2.3683 -2.5726 -6.5685 24 6 2.1525 -3.0979 -7.9189 25 6 3.4956 -3.2110 -8.6429 26 6 3.2702 -3.7590 -10.0534 27 6 2.6060 -3.3276 -5.4800 28 6 2.6936 -4.8317 -5.4483 29 1 -1.0497 -0.0003 0.0003 30 1 3.0090 0.7028 0.7506 31 1 3.0093 0.2999 -0.9832 32 1 1.9011 0.6002 3.2242 33 1 3.3712 -3.8456 -2.8228 34 1 2.6443 -0.1975 -4.3603 35 1 3.0891 0.2148 -7.6113 36 1 1.4833 -0.4425 -8.0084 37 1 1.6635 0.7212 -6.6736 38 1 1.6898 -4.0828 -7.8560 39 1 1.4978 -2.4235 -8.4708 40 1 3.9584 -2.2261 -8.7058 41 1 4.1503 -3.8854 -8.0909 42 1 4.2272 -3.8399 -10.5690 43 1 2.8072 -4.7438 -9.9909 44 1 2.6157 -3.0842 -10.6051 45 1 1.7043 -5.2495 -5.2620 46 1 3.0665 -5.1942 -6.4063 47 1 3.3735 -5.1394 -4.6538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281593872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:21 Heat of formation + Delta-G solvation = 126.614591 kcal Electronic energy + Delta-G solvation = -28979.630996 eV Core-core repulsion = 25131.353645 eV Total energy + Delta-G solvation = -3848.277351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.47111 -40.87205 -38.09989 -37.24391 -36.12217 -34.63933 -33.89018 -33.45003 -33.03443 -31.43485 -30.03954 -28.54887 -27.61527 -26.44487 -25.82705 -23.85945 -22.70617 -21.97670 -21.24418 -19.82259 -19.70535 -18.60979 -18.28755 -17.33704 -16.88621 -16.42237 -16.24560 -16.02295 -16.00940 -15.74782 -15.34145 -15.00195 -14.68748 -14.51851 -14.37726 -14.24109 -14.12453 -14.08835 -13.85510 -13.58954 -13.35448 -13.33822 -13.07390 -13.02408 -12.88098 -12.79179 -12.68159 -12.53939 -12.22949 -12.14127 -12.12563 -12.00529 -11.68600 -11.24269 -11.17257 -11.02915 -10.61228 -10.44014 -9.84950 -9.29471 -8.55902 -8.29272 -5.93315 -0.39959 1.26590 1.41388 1.43288 1.56580 1.79087 1.84482 1.89134 1.92062 2.09731 2.28194 2.35706 2.81001 3.10323 3.19131 3.29264 3.68324 3.71647 3.78836 3.82311 3.92969 4.03806 4.12299 4.30883 4.35711 4.40832 4.47008 4.53369 4.56214 4.68954 4.71592 4.77394 4.82525 4.88475 4.93701 5.00888 5.02403 5.12494 5.16914 5.18884 5.31068 5.33468 5.40867 5.43453 5.45074 5.83503 6.04800 6.12694 6.35360 6.41895 6.66919 7.04761 7.10375 7.36913 7.94611 8.67601 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.002759 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.560034 B =10145.949000 C =10966.885459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.139 4.139 3 C 0.219 3.781 4 N -0.447 5.447 5 C -0.339 4.339 6 H 0.091 0.909 7 C -0.010 4.010 8 N -0.885 5.885 9 Si 0.998 3.002 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.269 1.269 13 C 0.498 3.502 14 O -0.616 6.616 15 C -0.187 4.187 16 C 0.295 3.705 17 N -0.465 5.465 18 C 0.122 3.878 19 C -0.234 4.234 20 C -0.199 4.199 21 C 0.011 3.989 22 C -0.080 4.080 23 N -0.425 5.425 24 C 0.089 3.911 25 C -0.135 4.135 26 C -0.146 4.146 27 C 0.112 3.888 28 C -0.098 4.098 29 H 0.232 0.768 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.272 0.728 33 H 0.159 0.841 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 -6.390 -26.494 27.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.140 4.140 3 C 0.096 3.904 4 N -0.163 5.163 5 C -0.466 4.466 6 H 0.108 0.892 7 C -0.211 4.211 8 N -0.522 5.522 9 Si 0.821 3.179 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.193 1.193 13 C 0.290 3.710 14 O -0.504 6.504 15 C -0.195 4.195 16 C -0.014 4.014 17 N -0.144 5.144 18 C 0.097 3.903 19 C -0.240 4.240 20 C -0.222 4.222 21 C -0.097 4.097 22 C -0.138 4.138 23 N -0.099 5.099 24 C -0.031 4.031 25 C -0.174 4.174 26 C -0.204 4.204 27 C -0.008 4.008 28 C -0.155 4.155 29 H 0.248 0.752 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.177 0.823 34 H 0.144 0.856 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.712 -5.280 -26.893 27.416 hybrid contribution 0.191 0.153 1.722 1.739 sum -0.520 -5.127 -25.172 25.694 Atomic orbital electron populations 1.25032 0.96297 1.00605 1.05290 1.23251 0.94745 0.99735 0.96304 1.18832 0.84950 0.86497 1.00162 1.43760 1.54781 1.09000 1.08742 1.19808 1.30513 1.13558 0.82768 0.89152 1.26234 0.95751 0.96035 1.03111 1.70164 1.25553 1.22844 1.33681 0.84856 0.77921 0.78931 0.76169 1.19050 1.20363 1.19323 1.17817 0.83673 0.84505 0.84988 1.90573 1.55190 1.21322 1.83347 1.18109 1.15298 0.91608 0.94520 1.25114 0.92935 0.92510 0.90854 1.81091 1.10915 1.11526 1.10899 1.21305 0.83584 0.96867 0.88586 1.18669 1.19262 0.93580 0.92483 1.22394 1.08433 0.96753 0.94632 1.20485 1.08787 0.85310 0.95070 1.20395 1.03128 0.93363 0.96888 1.43887 1.52576 1.04904 1.08494 1.22388 0.99639 1.02359 0.78703 1.21862 0.95870 1.02267 0.97364 1.21678 1.02652 1.01740 0.94303 1.21395 0.99254 0.95140 0.84990 1.20714 1.04802 0.84482 1.05454 0.75174 0.87971 0.90326 0.91821 0.82335 0.85601 0.89898 0.89438 0.90998 0.86906 0.87540 0.92092 0.91495 0.91941 0.91345 0.91708 0.88704 0.88380 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -12.13 19.21 74.32 1.43 -10.70 16 2 C -0.14 -7.26 8.57 31.12 0.27 -6.99 16 3 C 0.22 11.59 4.69 84.57 0.40 11.99 16 4 N -0.45 -25.26 2.61 -649.78 -1.70 -26.95 16 5 C -0.34 -19.93 9.36 84.09 0.79 -19.15 16 6 H 0.09 5.48 7.35 -2.91 -0.02 5.46 16 7 C -0.01 -0.52 5.06 84.95 0.43 -0.09 16 8 N -0.88 -49.51 9.21 21.68 0.20 -49.32 16 9 Si 1.00 43.67 29.58 68.60 2.03 45.70 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 13 C 0.50 26.64 7.47 86.49 0.65 27.29 16 14 O -0.62 -35.13 15.97 -4.41 -0.07 -35.20 16 15 C -0.19 -8.28 5.87 -19.80 -0.12 -8.39 16 16 C 0.30 13.03 6.87 88.34 0.61 13.64 16 17 N -0.47 -20.58 14.70 19.00 0.28 -20.30 16 18 C 0.12 4.29 9.30 23.14 0.22 4.50 16 19 C -0.23 -7.05 5.92 -20.03 -0.12 -7.17 16 20 C -0.20 -6.25 9.38 23.67 0.22 -6.03 16 21 C 0.01 0.26 6.84 40.93 0.28 0.54 16 22 C -0.08 -1.31 10.04 71.24 0.72 -0.59 16 23 N -0.42 -7.72 2.68 -494.02 -1.33 -9.05 16 24 C 0.09 0.79 5.36 86.38 0.46 1.26 16 25 C -0.14 -1.06 6.26 30.59 0.19 -0.87 16 26 C -0.15 -0.62 9.91 71.98 0.71 0.09 16 27 C 0.11 2.38 6.95 42.21 0.29 2.68 16 28 C -0.10 -1.26 9.62 71.24 0.69 -0.58 16 29 H 0.23 8.87 7.80 -4.43 -0.03 8.84 16 30 H 0.10 5.72 6.01 -2.38 -0.01 5.71 16 31 H 0.08 3.94 4.45 -2.38 -0.01 3.93 16 32 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 33 H 0.16 5.03 7.07 -2.91 -0.02 5.01 16 34 H 0.13 4.58 5.08 -2.91 -0.01 4.57 16 35 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.09 0.95 6.92 -2.39 -0.02 0.93 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.11 0.59 7.51 -2.39 -0.02 0.57 16 39 H 0.11 0.68 6.88 -2.39 -0.02 0.67 16 40 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.61 8.12 -2.39 -0.02 0.59 16 42 H 0.06 0.30 8.14 -2.38 -0.02 0.28 16 43 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 46 H 0.10 0.71 7.58 -2.38 -0.02 0.69 16 47 H 0.09 1.26 7.51 -2.39 -0.02 1.24 16 Total: -1.00 -78.13 390.32 8.51 -69.62 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.99 Total: 24.08 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 8.11 Total: 1.41 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -2.54 Total: -105.61 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.07 Total: -35.20 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -78.13 8.51 -69.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281593872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.234 kcal (2) G-P(sol) polarization free energy of solvation -78.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds