Wall clock time and date at job start Tue Mar 31 2020 22:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46905 * 109.46862 * 108.73377 * 3 2 1 5 5 C 1.46893 * 111.00010 * 69.51884 * 4 3 2 6 6 C 1.50708 * 109.46791 * 199.22508 * 5 4 3 7 7 O 1.21279 * 119.99990 * 5.29389 * 6 5 4 8 8 N 1.34780 * 119.99662 * 185.29227 * 6 5 4 9 9 C 1.46503 * 119.99467 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.46616 * 90.00578 * 9 8 6 11 11 H 1.08000 * 120.00404 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99618 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00701 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00052 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47259 * 89.99849 * 14 12 10 16 16 H 1.48498 * 109.47344 * 210.00369 * 14 12 10 17 17 H 1.48507 * 109.46933 * 330.00342 * 14 12 10 18 18 C 1.46498 * 120.00127 * 0.02562 * 8 6 5 19 19 C 1.53003 * 109.47162 * 89.99651 * 18 8 6 20 20 C 1.47202 * 109.47180 * 179.97438 * 19 18 8 21 21 N 7.42850 * 109.39830 * 177.75206 * 2 1 3 22 22 C 1.46905 * 110.99601 * 193.47109 * 4 3 2 23 23 C 1.50699 * 109.47325 * 66.04438 * 22 4 3 24 24 C 1.38230 * 119.99691 * 90.00122 * 23 22 4 25 25 C 1.38233 * 119.99907 * 179.97438 * 24 23 22 26 26 C 1.38239 * 119.99801 * 359.95457 * 25 24 23 27 27 C 1.38238 * 120.00299 * 0.27618 * 26 25 24 28 28 C 1.38236 * 119.99528 * 359.51491 * 27 26 25 29 29 H 4.40885 * 5.52146 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47526 * 348.73002 * 3 2 1 31 31 H 1.09001 * 109.47106 * 228.72910 * 3 2 1 32 32 H 1.09003 * 109.46984 * 319.22019 * 5 4 3 33 33 H 1.08998 * 109.47631 * 79.22847 * 5 4 3 34 34 H 1.08997 * 109.46877 * 210.00269 * 9 8 6 35 35 H 1.08992 * 109.47434 * 330.00509 * 9 8 6 36 36 H 0.96998 * 120.00533 * 179.97438 * 13 12 10 37 37 H 1.09001 * 109.46943 * 209.99497 * 18 8 6 38 38 H 1.08991 * 109.47423 * 329.99514 * 18 8 6 39 39 H 1.09001 * 109.47066 * 299.99770 * 19 18 8 40 40 H 1.09006 * 109.47118 * 60.00119 * 19 18 8 41 41 H 1.09010 * 109.47078 * 306.04080 * 22 4 3 42 42 H 1.09006 * 109.47067 * 186.04887 * 22 4 3 43 43 H 1.07999 * 120.00706 * 359.97438 * 24 23 22 44 44 H 1.07997 * 120.00493 * 179.97438 * 25 24 23 45 45 H 1.08006 * 119.99978 * 180.02562 * 26 25 24 46 46 H 1.07994 * 120.00288 * 179.72513 * 27 26 25 47 47 H 1.07997 * 120.00259 * 180.25530 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1354 0.4457 -1.3117 5 6 2.8578 1.8730 -1.5206 6 6 2.9258 2.1877 -2.9928 7 8 3.0850 1.2941 -3.7972 8 7 2.8097 3.4622 -3.4155 9 6 2.8764 3.7681 -4.8467 10 6 1.4911 3.7117 -5.4374 11 1 0.6457 3.4715 -4.8097 12 6 1.3031 3.9667 -6.7792 13 7 2.3325 4.2586 -7.5438 14 14 -0.4139 3.8960 -7.5117 15 1 -1.0457 5.2370 -7.4226 16 1 -0.3282 3.4828 -8.9355 17 1 -1.2330 2.9121 -6.7591 18 6 2.6180 4.5416 -2.4438 19 6 3.9810 5.0809 -2.0050 20 6 3.7883 6.1659 -1.0291 21 7 3.6413 7.0014 -0.2748 22 6 4.5685 0.1604 -1.4633 23 6 4.7841 -1.3309 -1.4873 24 6 4.7572 -2.0138 -2.6888 25 6 4.9554 -3.3817 -2.7109 26 6 5.1815 -4.0664 -1.5315 27 6 5.2036 -3.3842 -0.3294 28 6 5.0096 -2.0157 -0.3078 29 1 -1.0501 0.0001 0.0002 30 1 3.0099 -1.0070 0.2008 31 1 3.0090 0.6787 0.7724 32 1 1.8622 2.1083 -1.1443 33 1 3.5982 2.4691 -0.9871 34 1 3.2903 4.7668 -4.9858 35 1 3.5139 3.0380 -5.3451 36 1 2.2002 4.4377 -8.4879 37 1 2.0400 5.3443 -2.9018 38 1 2.0825 4.1580 -1.5755 39 1 4.5590 4.2782 -1.5471 40 1 4.5166 5.4647 -2.8734 41 1 5.1158 0.5933 -0.6258 42 1 4.9288 0.5947 -2.3959 43 1 4.5813 -1.4788 -3.6103 44 1 4.9340 -3.9154 -3.6495 45 1 5.3368 -5.1351 -1.5488 46 1 5.3758 -3.9198 0.5924 47 1 5.0310 -1.4820 0.6308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285810620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:27 Heat of formation + Delta-G solvation = 68.981469 kcal Electronic energy + Delta-G solvation = -28741.046412 eV Core-core repulsion = 24890.269902 eV Total energy + Delta-G solvation = -3850.776510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.02606 -40.11133 -38.22478 -37.81472 -36.56262 -34.85221 -34.02911 -32.51047 -32.11547 -31.72369 -30.10657 -28.50339 -27.78026 -25.30372 -25.02413 -23.53730 -23.35676 -21.82557 -19.94334 -19.08775 -18.80559 -18.32231 -17.87795 -17.68678 -17.22496 -16.70107 -16.48208 -16.17654 -15.78846 -15.71497 -15.57094 -15.20702 -15.17230 -14.67424 -14.32750 -14.22152 -14.06815 -13.86200 -13.70688 -13.57853 -13.50396 -13.38452 -13.18741 -13.14076 -12.95482 -12.72307 -12.55342 -12.49169 -12.16990 -11.89859 -11.79455 -11.76161 -11.64694 -11.34542 -11.06754 -10.57122 -10.48139 -9.72317 -9.62177 -9.42309 -9.18399 -8.16721 -6.28428 0.47729 0.58457 1.38475 1.41293 1.50447 1.69137 1.78683 1.85219 1.94842 1.99577 2.31741 2.45384 2.85577 3.10772 3.15693 3.36742 3.57027 3.77677 3.95113 4.01549 4.08027 4.12178 4.23365 4.24110 4.34485 4.37670 4.43565 4.53331 4.58383 4.62342 4.69453 4.79039 4.85215 4.87869 5.06437 5.13887 5.15581 5.20275 5.24801 5.36651 5.61489 5.63973 5.70136 5.80589 5.87660 5.97698 6.08188 6.16063 6.21370 6.61298 6.76966 6.79551 6.86870 7.37542 7.62705 8.89588 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008288 B = 0.003508 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3377.751666 B = 7979.723620 C = 9526.423896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.208 4.208 3 C 0.160 3.840 4 N -0.538 5.538 5 C 0.046 3.954 6 C 0.502 3.498 7 O -0.566 6.566 8 N -0.601 5.601 9 C 0.264 3.736 10 C -0.538 4.538 11 H 0.050 0.950 12 C 0.013 3.987 13 N -0.925 5.925 14 Si 0.954 3.046 15 H -0.266 1.266 16 H -0.284 1.284 17 H -0.277 1.277 18 C 0.114 3.886 19 C -0.037 4.037 20 C 0.246 3.754 21 N -0.488 5.488 22 C 0.101 3.899 23 C -0.085 4.085 24 C -0.117 4.117 25 C -0.136 4.136 26 C -0.126 4.126 27 C -0.125 4.125 28 C -0.117 4.117 29 H 0.237 0.763 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.034 0.966 35 H 0.003 0.997 36 H 0.265 0.735 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.137 0.863 40 H 0.121 0.879 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.125 0.875 45 H 0.141 0.859 46 H 0.149 0.851 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 -10.461 19.433 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.208 4.208 3 C 0.034 3.966 4 N -0.263 5.263 5 C -0.084 4.084 6 C 0.290 3.710 7 O -0.444 6.444 8 N -0.333 5.333 9 C 0.142 3.858 10 C -0.577 4.577 11 H 0.068 0.932 12 C -0.187 4.187 13 N -0.565 5.565 14 Si 0.780 3.220 15 H -0.191 1.191 16 H -0.210 1.210 17 H -0.202 1.202 18 C -0.011 4.011 19 C -0.078 4.078 20 C -0.071 4.071 21 N -0.166 5.166 22 C -0.025 4.025 23 C -0.086 4.086 24 C -0.136 4.136 25 C -0.154 4.154 26 C -0.144 4.144 27 C -0.142 4.142 28 C -0.136 4.136 29 H 0.254 0.746 30 H 0.127 0.873 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.052 0.948 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.155 0.845 40 H 0.139 0.861 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.115 0.885 44 H 0.143 0.857 45 H 0.159 0.841 46 H 0.167 0.833 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.584 -9.882 19.579 22.631 hybrid contribution -0.780 0.251 -1.231 1.479 sum 4.804 -9.630 18.349 21.272 Atomic orbital electron populations 1.25627 0.96915 1.00497 0.99110 1.23407 0.95204 1.00965 1.01252 1.19253 0.84530 1.03188 0.89590 1.61273 1.17196 1.16693 1.31130 1.22079 1.04524 0.89662 0.92149 1.21098 0.76240 0.81965 0.91677 1.90667 1.49607 1.46499 1.57609 1.48101 1.71166 1.06192 1.07888 1.18738 0.95334 0.95345 0.76343 1.21754 0.94527 1.46991 0.94433 0.93210 1.25679 1.00542 0.94949 0.97487 1.70014 1.31538 1.48522 1.06432 0.85615 0.80294 0.78636 0.77466 1.19137 1.20970 1.20161 1.21482 0.95608 0.91008 0.93002 1.19839 1.00189 0.92526 0.95288 1.29105 0.91822 0.93410 0.92811 1.81218 1.09976 1.12528 1.12920 1.21052 0.86750 0.92451 1.02256 1.19803 0.99839 0.95359 0.93574 1.21158 0.99269 0.95100 0.98072 1.21357 1.00483 0.94075 0.99479 1.21447 0.99688 1.00903 0.92383 1.21465 0.99640 0.94385 0.98745 1.21331 0.99756 0.94949 0.97536 0.74637 0.87298 0.89365 0.87494 0.87918 0.94841 0.97856 0.92628 0.89955 0.88041 0.84550 0.86138 0.90541 0.91494 0.88483 0.85723 0.84105 0.83336 0.83496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.57 19.25 74.32 1.43 -3.13 16 2 C -0.21 -4.94 12.43 31.12 0.39 -4.56 16 3 C 0.16 3.12 5.28 84.49 0.45 3.57 16 4 N -0.54 -13.65 3.98 -916.46 -3.65 -17.30 16 5 C 0.05 1.13 3.79 85.56 0.32 1.45 16 6 C 0.50 18.25 7.22 87.66 0.63 18.89 16 7 O -0.57 -27.02 15.04 -3.03 -0.05 -27.06 16 8 N -0.60 -21.53 2.46 -826.16 -2.03 -23.56 16 9 C 0.26 12.76 5.16 85.63 0.44 13.20 16 10 C -0.54 -29.46 9.39 25.60 0.24 -29.22 16 11 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 12 C 0.01 0.70 5.46 84.65 0.46 1.16 16 13 N -0.92 -54.02 13.29 21.45 0.28 -53.74 16 14 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 C 0.11 2.77 5.09 86.38 0.44 3.21 16 19 C -0.04 -0.65 5.98 28.79 0.17 -0.48 16 20 C 0.25 5.16 15.43 89.45 1.38 6.54 16 21 N -0.49 -13.19 18.53 20.00 0.37 -12.82 16 22 C 0.10 2.32 4.76 85.56 0.41 2.73 16 23 C -0.09 -2.01 4.92 -19.87 -0.10 -2.10 16 24 C -0.12 -3.30 9.70 22.27 0.22 -3.08 16 25 C -0.14 -3.19 10.05 22.27 0.22 -2.97 16 26 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 27 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 28 C -0.12 -2.03 7.85 22.27 0.17 -1.86 16 29 H 0.24 3.75 7.80 -4.41 -0.03 3.72 16 30 H 0.11 1.99 5.27 -2.39 -0.01 1.97 16 31 H 0.09 1.15 8.08 -2.39 -0.02 1.14 16 32 H 0.11 2.51 6.54 -2.39 -0.02 2.49 16 33 H 0.10 1.59 6.76 -2.39 -0.02 1.58 16 34 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 35 H 0.00 0.19 7.42 -2.39 -0.02 0.17 16 36 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 37 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 38 H 0.10 1.92 6.59 -2.39 -0.02 1.90 16 39 H 0.14 1.58 7.13 -2.39 -0.02 1.56 16 40 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.08 1.18 8.07 -2.38 -0.02 1.16 16 42 H 0.07 1.94 6.78 -2.38 -0.02 1.93 16 43 H 0.10 3.29 8.06 -2.91 -0.02 3.26 16 44 H 0.12 2.63 8.06 -2.91 -0.02 2.61 16 45 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 46 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 47 H 0.15 1.63 7.79 -2.91 -0.02 1.61 16 Total: -1.00 -78.83 406.89 5.65 -73.18 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.97 Total: 15.44 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 7.73 Total: -0.52 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -5.03 Total: -107.42 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.06 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -78.83 5.65 -73.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285810620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.160 kcal (2) G-P(sol) polarization free energy of solvation -78.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds